Wall clock time and date at job start Tue Mar 31 2020 05:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00075 * 2 1 4 4 H 1.48496 * 109.47125 * 270.00055 * 3 2 1 5 5 H 1.48501 * 109.46807 * 30.00514 * 3 2 1 6 6 H 1.48500 * 109.47198 * 149.99802 * 3 2 1 7 7 C 1.37882 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99910 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47119 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47194 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47462 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47386 * 180.02562 * 12 11 10 14 14 O 1.21289 * 119.99977 * 359.97438 * 13 12 11 15 15 N 1.34769 * 120.00196 * 179.97438 * 13 12 11 16 16 C 1.46926 * 120.63154 * 5.38236 * 15 13 12 17 17 C 1.53198 * 108.77492 * 233.58874 * 16 15 13 18 18 C 1.53041 * 109.30980 * 305.35854 * 17 16 15 19 19 C 1.53045 * 109.53630 * 61.37066 * 18 17 16 20 20 C 1.46929 * 120.63175 * 185.36089 * 15 13 12 21 21 H 1.09000 * 109.58526 * 246.34218 * 20 15 13 22 22 C 1.53000 * 109.58711 * 6.62425 * 20 15 13 23 23 C 1.52994 * 109.47093 * 178.28864 * 22 20 15 24 24 O 1.42903 * 109.47035 * 174.92443 * 23 22 20 25 25 H 0.97005 * 119.99846 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46856 * 59.99519 * 9 7 2 27 27 H 1.09001 * 109.46955 * 299.99712 * 9 7 2 28 28 H 1.08995 * 109.47125 * 59.99821 * 10 9 7 29 29 H 1.09001 * 109.47100 * 299.99780 * 10 9 7 30 30 H 1.09004 * 109.47311 * 59.99659 * 11 10 9 31 31 H 1.09001 * 109.46938 * 299.99904 * 11 10 9 32 32 H 1.08995 * 109.47142 * 59.99672 * 12 11 10 33 33 H 1.09001 * 109.46815 * 299.99794 * 12 11 10 34 34 H 1.09002 * 109.58661 * 353.37153 * 16 15 13 35 35 H 1.08997 * 109.58800 * 113.65924 * 16 15 13 36 36 H 1.08997 * 109.49549 * 65.31488 * 17 16 15 37 37 H 1.09004 * 109.49468 * 185.41293 * 17 16 15 38 38 H 1.08999 * 109.45502 * 181.38356 * 18 17 16 39 39 H 1.09003 * 109.46207 * 301.36248 * 18 17 16 40 40 H 1.08999 * 109.49370 * 178.67912 * 19 18 17 41 41 H 1.08999 * 109.49775 * 58.58045 * 19 18 17 42 42 H 1.09003 * 109.47028 * 58.28868 * 22 20 15 43 43 H 1.08997 * 109.47219 * 298.29211 * 22 20 15 44 44 H 1.09003 * 109.47328 * 54.92494 * 23 22 20 45 45 H 1.08997 * 109.47180 * 294.92446 * 23 22 20 46 46 H 0.96699 * 113.99665 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1500 0.0018 13 6 1.7210 -7.4552 0.0018 14 8 0.5081 -7.4552 0.0018 15 7 2.3948 -8.6223 0.0018 16 6 3.8592 -8.6413 0.1204 17 6 4.4376 -9.4529 -1.0431 18 6 3.7907 -10.8397 -1.0637 19 6 2.2819 -10.6975 -1.2770 20 6 1.6790 -9.9000 -0.1163 21 1 1.7833 -10.4642 0.8105 22 6 0.1976 -9.6344 -0.3912 23 6 -0.5372 -10.9662 -0.5561 24 8 -1.9386 -10.7230 -0.6950 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8719 -3.6043 -0.8895 30 1 0.8533 -5.0451 -0.8886 31 1 0.8540 -5.0446 0.8914 32 1 3.1011 -6.0918 0.8917 33 1 3.1011 -6.0927 -0.8882 34 1 4.2423 -7.6216 0.0806 35 1 4.1432 -9.1017 1.0666 36 1 4.2302 -8.9406 -1.9825 37 1 5.5151 -9.5560 -0.9145 38 1 4.2184 -11.4278 -1.8757 39 1 3.9773 -11.3416 -0.1143 40 1 1.8251 -11.6864 -1.3150 41 1 2.0948 -10.1735 -2.2143 42 1 0.0969 -9.0484 -1.3048 43 1 -0.2337 -9.0824 0.4438 44 1 -0.3618 -11.5891 0.3211 45 1 -0.1674 -11.4777 -1.4447 46 1 -2.4679 -11.5249 -0.8042 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589832558.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:01 Heat of formation + Delta-G solvation = -132.745930 kcal Electronic energy + Delta-G solvation = -22740.900875 eV Core-core repulsion = 19435.591802 eV Total energy + Delta-G solvation = -3305.309073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.64032 -38.68879 -37.79725 -36.67542 -34.89403 -34.10290 -33.74120 -31.33433 -29.62092 -27.73189 -25.84221 -24.98148 -23.95257 -22.28154 -21.85716 -21.46959 -19.89788 -18.45698 -18.38309 -17.61477 -17.19471 -16.78141 -16.49628 -16.19894 -15.75053 -15.26915 -15.04789 -14.90882 -14.69838 -14.49118 -14.23602 -14.04692 -13.57111 -13.55669 -13.39128 -13.13613 -12.82441 -12.62179 -12.43840 -12.32245 -12.15229 -12.13424 -12.04002 -11.87751 -11.57356 -11.46406 -11.39353 -11.31975 -11.06949 -10.87027 -10.55708 -9.99342 -9.55163 -8.18959 -6.31575 1.39897 1.42635 1.53710 1.64705 1.97857 2.41742 3.13589 3.22848 3.70375 3.80369 3.86728 4.02163 4.03440 4.08585 4.12184 4.19721 4.30220 4.37378 4.44788 4.49705 4.59184 4.64839 4.68032 4.74381 4.80624 4.85372 4.86624 4.95809 5.08709 5.11624 5.17049 5.20721 5.26644 5.32008 5.34800 5.37647 5.48468 5.55657 5.73077 5.76707 5.87066 6.24511 6.42707 6.86870 6.92476 7.25670 7.38128 8.93446 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.022620 B = 0.002991 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.571673 B = 9358.522869 C =10421.651064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.019 3.981 10 C -0.094 4.094 11 C -0.094 4.094 12 C -0.128 4.128 13 C 0.505 3.495 14 O -0.573 6.573 15 N -0.611 5.611 16 C 0.098 3.902 17 C -0.134 4.134 18 C -0.117 4.117 19 C -0.129 4.129 20 C 0.150 3.850 21 H 0.087 0.913 22 C -0.109 4.109 23 C 0.072 3.928 24 O -0.601 6.601 25 H 0.263 0.737 26 H -0.018 1.018 27 H -0.016 1.016 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.051 0.949 42 H 0.039 0.961 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.485 -28.999 -1.138 31.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.018 4.018 10 C -0.132 4.132 11 C -0.132 4.132 12 C -0.167 4.167 13 C 0.295 3.705 14 O -0.453 6.453 15 N -0.345 5.345 16 C -0.024 4.024 17 C -0.173 4.173 18 C -0.154 4.154 19 C -0.167 4.167 20 C 0.048 3.952 21 H 0.105 0.895 22 C -0.146 4.146 23 C -0.006 4.006 24 O -0.410 6.410 25 H 0.072 0.928 26 H 0.001 0.999 27 H 0.002 0.998 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 10.926 -28.291 -1.070 30.346 hybrid contribution -0.663 0.660 -0.154 0.948 sum 10.263 -27.630 -1.224 29.500 Atomic orbital electron populations 1.70142 1.08142 1.27774 1.51856 1.26123 0.95791 1.03835 0.94741 0.85359 0.78683 0.77916 0.78545 1.19680 1.20921 1.18190 1.21754 0.93766 0.92164 1.50301 0.91482 1.19051 0.94673 0.93884 0.94200 1.21435 0.97782 0.92655 1.01283 1.21233 0.97447 0.93757 1.00782 1.21715 0.98958 0.90025 1.06024 1.21208 0.87806 0.86527 0.74922 1.90773 1.15958 1.87521 1.51052 1.48285 1.08614 1.04968 1.72610 1.22093 0.77042 1.03193 1.00048 1.21941 1.01415 0.95959 0.97942 1.21531 0.93537 0.97016 1.03324 1.22056 0.97358 1.00440 0.96888 1.21234 0.90041 0.84294 0.99675 0.89528 1.21865 0.94324 0.95900 1.02558 1.22417 0.80781 0.96624 1.00745 1.86513 1.19528 1.38419 1.96542 0.92844 0.99914 0.99793 0.91984 0.92125 0.94237 0.93997 0.86621 0.86958 0.88364 0.89420 0.92499 0.88311 0.90356 0.90410 0.88917 0.92992 0.94178 0.91826 0.91920 0.91842 0.75413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.16 13.29 21.45 0.28 -59.88 16 2 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 3 Si 0.97 45.39 29.54 68.60 2.03 47.41 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.54 -32.02 9.11 25.60 0.23 -31.78 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.02 1.08 4.97 29.85 0.15 1.22 16 10 C -0.09 -3.98 5.15 30.59 0.16 -3.82 16 11 C -0.09 -3.59 4.50 30.59 0.14 -3.46 16 12 C -0.13 -3.42 4.05 29.85 0.12 -3.30 16 13 C 0.51 14.84 7.53 87.66 0.66 15.50 16 14 O -0.57 -22.32 11.53 -3.06 -0.04 -22.36 16 15 N -0.61 -12.72 2.97 -795.01 -2.36 -15.08 16 16 C 0.10 1.22 6.35 86.36 0.55 1.77 16 17 C -0.13 -1.29 6.08 30.67 0.19 -1.10 16 18 C -0.12 -1.01 5.88 30.62 0.18 -0.83 16 19 C -0.13 -1.68 4.82 30.67 0.15 -1.53 16 20 C 0.15 2.82 3.03 44.97 0.14 2.95 16 21 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 22 C -0.11 -2.87 3.54 30.59 0.11 -2.76 16 23 C 0.07 1.38 6.52 71.98 0.47 1.85 16 24 O -0.60 -14.11 13.66 -148.98 -2.04 -16.15 16 25 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 26 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 27 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 28 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.04 1.67 8.10 -2.38 -0.02 1.65 16 31 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 32 H 0.12 2.48 7.72 -2.39 -0.02 2.46 16 33 H 0.11 2.49 7.91 -2.39 -0.02 2.47 16 34 H 0.10 1.10 5.93 -2.39 -0.01 1.09 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.09 0.85 6.87 -2.39 -0.02 0.84 16 41 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.04 1.32 7.24 -2.39 -0.02 1.30 16 43 H 0.06 2.20 6.23 -2.39 -0.01 2.18 16 44 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.06 0.91 6.84 -2.39 -0.02 0.90 16 46 H 0.40 4.71 9.12 -74.06 -0.68 4.03 16 Total: -1.00 -81.53 357.13 1.84 -79.69 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.26 Total: 11.65 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 3.70 Total: -25.30 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -2.08 Total: -74.96 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -2.07 Total: -38.50 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -81.53 1.84 -79.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589832558.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.056 kcal (2) G-P(sol) polarization free energy of solvation -81.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds