Wall clock time and date at job start Tue Mar 31 2020 05:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 C 1.53004 * 110.00119 * 175.31531 * 3 2 1 5 5 O 1.42905 * 109.47120 * 54.81403 * 4 3 2 6 6 C 1.54324 * 109.88261 * 296.40703 * 3 2 1 7 7 C 1.55156 * 102.94435 * 141.60796 * 6 3 2 8 8 C 1.55133 * 101.48584 * 324.33904 * 7 6 3 9 9 N 1.47022 * 109.88643 * 54.21997 * 3 2 1 10 10 C 1.34775 * 125.65207 * 61.60420 * 9 3 2 11 11 O 1.21282 * 119.99633 * 0.02562 * 10 9 3 12 12 C 1.50694 * 120.00455 * 180.02562 * 10 9 3 13 13 C 1.52998 * 109.47567 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47380 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47092 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47063 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99932 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00221 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99791 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00590 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46569 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47423 * 119.99770 * 20 18 16 23 23 H 1.48496 * 109.47510 * 240.00142 * 20 18 16 24 24 H 1.09001 * 109.47512 * 306.34014 * 1 2 3 25 25 H 1.09004 * 109.46819 * 66.33970 * 1 2 3 26 26 H 1.09003 * 109.47149 * 186.33614 * 1 2 3 27 27 H 1.09002 * 109.47575 * 239.99438 * 2 1 3 28 28 H 1.08999 * 109.46942 * 119.99283 * 2 1 3 29 29 H 1.08996 * 109.47622 * 174.81848 * 4 3 2 30 30 H 1.09001 * 109.46853 * 294.82110 * 4 3 2 31 31 H 0.96698 * 114.00175 * 180.02562 * 5 4 3 32 32 H 1.08997 * 110.72296 * 259.97659 * 6 3 2 33 33 H 1.09004 * 110.71886 * 23.07197 * 6 3 2 34 34 H 1.09005 * 110.99761 * 82.57258 * 7 6 3 35 35 H 1.08991 * 111.00802 * 206.42647 * 7 6 3 36 36 H 1.09000 * 110.49085 * 278.44598 * 8 7 6 37 37 H 1.09003 * 110.34075 * 156.05313 * 8 7 6 38 38 H 1.09001 * 109.46857 * 59.99629 * 12 10 9 39 39 H 1.08998 * 109.46853 * 300.00439 * 12 10 9 40 40 H 1.08998 * 109.46972 * 300.00343 * 13 12 10 41 41 H 1.09000 * 109.46799 * 59.99718 * 13 12 10 42 42 H 1.08998 * 109.47259 * 300.00058 * 14 13 12 43 43 H 1.09000 * 109.47474 * 60.00022 * 14 13 12 44 44 H 1.08998 * 109.46759 * 299.99513 * 15 14 13 45 45 H 1.09000 * 109.47121 * 59.99589 * 15 14 13 46 46 H 0.97004 * 119.99850 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5654 1.4582 0.1174 5 8 4.1314 0.6571 -0.9218 6 6 1.6064 2.1525 -1.2998 7 6 1.2562 3.5838 -0.8139 8 6 0.6409 3.2947 0.5805 9 7 1.4445 2.1834 1.1216 10 6 1.6023 1.8916 2.4279 11 8 2.2854 0.9460 2.7597 12 6 0.9301 2.7402 3.4762 13 6 1.2687 2.1973 4.8660 14 6 0.5856 3.0585 5.9302 15 6 0.9247 2.5159 7.3200 16 6 0.2514 3.3638 8.3683 17 1 -0.3571 4.2057 8.0728 18 6 0.4131 3.0654 9.7046 19 7 1.1546 2.0405 10.0645 20 14 -0.4208 4.1168 11.0041 21 1 -1.1919 5.2006 10.3437 22 1 -1.3411 3.2729 11.8078 23 1 0.6079 4.7130 11.8935 24 1 -0.3634 0.6090 0.8278 25 1 -0.3633 0.4124 -0.9413 26 1 -0.3633 -1.0214 0.1134 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5137 0.8900 29 1 3.9265 2.4824 0.0242 30 1 3.8593 1.0561 1.0870 31 1 5.0976 0.6210 -0.9086 32 1 2.4266 2.1786 -2.0171 33 1 0.7328 1.6648 -1.7327 34 1 2.1529 4.1978 -0.7293 35 1 0.5247 4.0519 -1.4724 36 1 -0.4027 2.9957 0.4825 37 1 0.7265 4.1720 1.2217 38 1 -0.1495 2.7123 3.3287 39 1 1.2819 3.7684 3.3917 40 1 0.9166 1.1692 4.9501 41 1 2.3483 2.2248 5.0137 42 1 0.9373 4.0867 5.8462 43 1 -0.4939 3.0305 5.7824 44 1 0.5733 1.4876 7.4043 45 1 2.0043 2.5442 7.4676 46 1 1.2681 1.8304 11.0046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589848747.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:24 Heat of formation + Delta-G solvation = -112.923684 kcal Electronic energy + Delta-G solvation = -23101.441540 eV Core-core repulsion = 19796.992024 eV Total energy + Delta-G solvation = -3304.449516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.84738 -38.13317 -36.48939 -34.89140 -33.38057 -32.54052 -31.80814 -29.79480 -29.18993 -25.84868 -25.35109 -23.64994 -22.81486 -22.14545 -20.47846 -19.89219 -18.33771 -17.48561 -16.85352 -16.57180 -16.13984 -15.53172 -15.08090 -14.70618 -14.54743 -14.38415 -14.21596 -13.64623 -13.59545 -13.07366 -12.84613 -12.60731 -12.53893 -12.17056 -12.03808 -11.73325 -11.62764 -11.54238 -11.43411 -11.24071 -10.98981 -10.91104 -10.61411 -10.52091 -10.47156 -10.39468 -10.15639 -9.62398 -9.60220 -9.19779 -8.95832 -8.77677 -8.29973 -5.94547 -3.96990 2.69880 2.77868 3.33538 3.40696 3.44638 4.04848 4.20228 4.29300 4.49577 4.60913 4.78869 4.82974 4.85890 4.99140 5.14260 5.26593 5.30817 5.32829 5.36205 5.40663 5.41788 5.44279 5.51682 5.63491 5.70222 5.74744 5.83681 5.90367 5.93017 6.05231 6.15185 6.24558 6.30192 6.42071 6.56553 6.85182 7.02731 7.21179 7.35101 7.47231 7.75330 7.91185 8.07030 8.23993 8.48890 9.10967 9.66687 11.16810 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.031225 B = 0.002898 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.507762 B = 9659.945892 C = 9923.864125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.171 3.829 4 C 0.070 3.930 5 O -0.570 6.570 6 C -0.122 4.122 7 C -0.135 4.135 8 C 0.099 3.901 9 N -0.615 5.615 10 C 0.529 3.471 11 O -0.529 6.529 12 C -0.134 4.134 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.380 0.620 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.016 0.984 45 H 0.016 0.984 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.097 1.788 -26.956 27.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.086 3.914 4 C -0.008 4.008 5 O -0.374 6.374 6 C -0.160 4.160 7 C -0.173 4.173 8 C -0.024 4.024 9 N -0.352 5.352 10 C 0.319 3.681 11 O -0.405 6.405 12 C -0.174 4.174 13 C -0.141 4.141 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.227 0.773 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.912 1.078 -26.663 26.700 hybrid contribution 0.147 0.722 0.980 1.226 sum 1.059 1.800 -25.682 25.767 Atomic orbital electron populations 1.21772 0.95788 1.01571 1.01403 1.21731 0.95860 0.95075 1.03433 1.20807 0.91341 0.93045 0.86219 1.22453 0.93263 0.93856 0.91278 1.86379 1.25291 1.72533 1.53221 1.22748 1.02497 0.94815 0.95945 1.22843 1.01467 0.97141 0.95832 1.22399 0.95235 0.89759 0.95002 1.48678 1.50376 1.31289 1.04832 1.20828 0.80747 0.85134 0.81386 1.90687 1.39719 1.29676 1.80408 1.21792 1.01274 0.99566 0.94759 1.21456 1.01512 1.00220 0.90894 1.21643 0.98676 0.97953 0.96463 1.19098 0.96888 0.96343 0.89413 1.21323 1.29998 1.13252 0.91189 0.92712 1.25046 0.95465 0.95324 0.98776 1.69991 1.39304 1.27741 1.16433 0.86558 0.79335 0.80440 0.81789 1.19773 1.21049 1.21064 0.92677 0.92959 0.92855 0.90683 0.90667 0.93884 0.91733 0.77319 0.89674 0.90086 0.90659 0.89765 0.91059 0.90183 0.89260 0.89290 0.91795 0.91853 0.93528 0.93492 0.96591 0.96608 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.49 37.15 0.35 -1.16 16 2 C -0.12 -1.42 4.57 -26.74 -0.12 -1.54 16 3 C 0.17 1.80 0.35 -130.84 -0.05 1.75 16 4 C 0.07 0.77 5.93 37.16 0.22 0.99 16 5 O -0.57 -5.46 12.41 -35.23 -0.44 -5.90 16 6 C -0.12 -0.95 5.76 -24.90 -0.14 -1.10 16 7 C -0.13 -0.85 7.10 -24.46 -0.17 -1.03 16 8 C 0.10 0.77 6.66 -2.41 -0.02 0.75 16 9 N -0.61 -6.80 1.75 -155.67 -0.27 -7.08 16 10 C 0.53 7.60 7.32 -10.99 -0.08 7.52 16 11 O -0.53 -9.54 13.59 5.56 0.08 -9.47 16 12 C -0.13 -1.84 4.70 -27.89 -0.13 -1.97 16 13 C -0.10 -1.87 4.50 -26.74 -0.12 -1.99 16 14 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 15 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 16 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 17 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 20 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H 0.05 0.62 7.14 -51.93 -0.37 0.25 16 25 H 0.05 0.44 6.49 -51.93 -0.34 0.10 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.84 7.75 -51.93 -0.40 0.43 16 28 H 0.07 1.09 7.02 -51.93 -0.36 0.72 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.88 6.59 -51.93 -0.34 0.53 16 31 H 0.38 2.10 9.12 45.56 0.42 2.52 16 32 H 0.08 0.67 7.49 -51.93 -0.39 0.28 16 33 H 0.08 0.59 6.07 -51.93 -0.32 0.27 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.56 7.48 -51.93 -0.39 0.17 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.09 1.06 7.85 -51.93 -0.41 0.66 16 40 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 41 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 359.63 15.07 5.42 5.42 Total: -1.00 -34.12 359.63 -7.96 -42.08 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.51 Total: -1.43 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -0.95 Total: -13.67 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.46 Total: -34.01 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -0.36 Total: -15.36 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.12 -7.96 -42.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589848747.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.843 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds