Wall clock time and date at job start Tue Mar 31 2020 05:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47412 * 2 1 4 4 C 1.52998 * 109.87674 * 184.96525 * 3 2 1 5 5 O 1.42900 * 109.47180 * 295.26662 * 4 3 2 6 6 C 1.54326 * 109.88455 * 63.94744 * 3 2 1 7 7 C 1.55162 * 102.94051 * 262.78078 * 6 3 2 8 8 C 1.54914 * 101.58055 * 324.49595 * 7 6 3 9 9 N 1.47025 * 109.87773 * 305.98149 * 3 2 1 10 10 C 1.34774 * 125.64844 * 300.42249 * 9 3 2 11 11 O 1.21277 * 120.00060 * 359.97438 * 10 9 3 12 12 C 1.50707 * 120.00139 * 180.02562 * 10 9 3 13 13 C 1.52993 * 109.47127 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47183 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47183 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47238 * 180.02562 * 15 14 13 17 17 H 1.08009 * 119.99709 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00144 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00615 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46904 * 89.99792 * 20 18 16 22 22 H 1.48496 * 109.47155 * 209.99981 * 20 18 16 23 23 H 1.48501 * 109.46990 * 330.00534 * 20 18 16 24 24 H 1.08995 * 109.47079 * 173.43219 * 1 2 3 25 25 H 1.08999 * 109.47375 * 293.43512 * 1 2 3 26 26 H 1.09002 * 109.46888 * 53.43765 * 1 2 3 27 27 H 1.08994 * 109.47422 * 239.99700 * 2 1 3 28 28 H 1.09004 * 109.47391 * 119.99707 * 2 1 3 29 29 H 1.09005 * 109.47122 * 55.26608 * 4 3 2 30 30 H 1.09000 * 109.47211 * 175.26398 * 4 3 2 31 31 H 0.96694 * 114.00156 * 179.97438 * 5 4 3 32 32 H 1.09003 * 110.71909 * 21.13841 * 6 3 2 33 33 H 1.08994 * 110.71954 * 144.23790 * 6 3 2 34 34 H 1.08997 * 111.00803 * 82.57261 * 7 6 3 35 35 H 1.09004 * 111.00330 * 206.38352 * 7 6 3 36 36 H 1.09000 * 110.36174 * 155.85300 * 8 7 6 37 37 H 1.09001 * 110.36533 * 278.06065 * 8 7 6 38 38 H 1.09001 * 109.46464 * 300.00226 * 12 10 9 39 39 H 1.08994 * 109.46958 * 59.99761 * 12 10 9 40 40 H 1.09003 * 109.47667 * 300.00104 * 13 12 10 41 41 H 1.09002 * 109.47181 * 59.99724 * 13 12 10 42 42 H 1.09001 * 109.46595 * 300.00426 * 14 13 12 43 43 H 1.08994 * 109.46771 * 59.99926 * 14 13 12 44 44 H 1.09003 * 109.47667 * 300.00299 * 15 14 13 45 45 H 1.09002 * 109.47181 * 59.99919 * 15 14 13 46 46 H 0.96996 * 120.00682 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4550 -0.1245 5 8 4.1424 0.8490 1.0336 6 6 1.6141 2.1498 1.3038 7 6 0.3339 2.9174 0.8804 8 6 0.6840 3.3292 -0.5714 9 7 1.4408 2.1846 -1.1189 10 6 1.5629 1.8715 -2.4240 11 8 2.2131 0.9036 -2.7572 12 6 0.8922 2.7250 -3.4696 13 6 1.1873 2.1556 -4.8586 14 6 0.5059 3.0217 -5.9201 15 6 0.8004 2.4520 -7.3091 16 6 0.1298 3.3053 -8.3547 17 1 -0.4483 4.1681 -8.0580 18 6 0.2542 2.9848 -9.6898 19 7 0.9577 1.9340 -10.0511 20 14 -0.5776 4.0422 -10.9858 21 1 0.3489 5.1208 -11.4139 22 1 -0.9335 3.2014 -12.1569 23 1 -1.8096 4.6451 -10.4165 24 1 -0.3633 -1.0209 -0.1175 25 1 -0.3634 0.4087 0.9429 26 1 -0.3633 0.6122 -0.8255 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8615 0.8971 -1.0128 30 1 3.9141 2.4841 -0.2085 31 1 5.1089 0.8220 1.0228 32 1 1.3870 1.4208 2.0816 33 1 2.3881 2.8404 1.6385 34 1 -0.5384 2.2642 0.9017 35 1 0.1781 3.7942 1.5090 36 1 -0.2258 3.4938 -1.1488 37 1 1.3010 4.2278 -0.5725 38 1 -0.1844 2.7291 -3.2992 39 1 1.2740 3.7439 -3.4064 40 1 2.2639 2.1518 -5.0287 41 1 0.8059 1.1365 -4.9221 42 1 -0.5708 3.0250 -5.7499 43 1 0.8869 4.0409 -5.8567 44 1 1.8770 2.4482 -7.4796 45 1 0.4190 1.4328 -7.3722 46 1 1.0449 1.7082 -10.9904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589848748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:27 Heat of formation + Delta-G solvation = -112.007132 kcal Electronic energy + Delta-G solvation = -23116.812436 eV Core-core repulsion = 19812.402665 eV Total energy + Delta-G solvation = -3304.409771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.86153 -38.15065 -36.53149 -34.89012 -33.28606 -32.49463 -31.74214 -29.94512 -29.23778 -25.86457 -25.35125 -23.61909 -22.74962 -22.09734 -20.54378 -19.90567 -18.33115 -17.64017 -16.70127 -16.50730 -16.13555 -15.75106 -15.08579 -14.79560 -14.50521 -14.34411 -14.05145 -13.66403 -13.47704 -12.97026 -12.80920 -12.66912 -12.56906 -12.19191 -12.07200 -11.82886 -11.69806 -11.58775 -11.44928 -11.20884 -10.97629 -10.75275 -10.59407 -10.52814 -10.48753 -10.39416 -10.15341 -9.65585 -9.60095 -9.20172 -8.96954 -8.78857 -8.29675 -5.94372 -3.96945 2.68930 2.76730 3.34439 3.40449 3.43678 4.05910 4.23858 4.27484 4.49560 4.60422 4.74551 4.85382 4.89305 4.99658 5.17256 5.26646 5.30842 5.32885 5.36627 5.39644 5.41121 5.44116 5.54062 5.63384 5.67230 5.78584 5.83950 5.86343 5.98781 6.02515 6.15103 6.22747 6.29829 6.40512 6.56355 6.85058 7.02597 7.21119 7.34182 7.46406 7.75035 7.91162 8.07055 8.23725 8.48877 9.10791 9.66689 11.16956 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.031681 B = 0.002895 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.584476 B = 9669.283193 C = 9952.171836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.169 3.831 4 C 0.071 3.929 5 O -0.570 6.570 6 C -0.111 4.111 7 C -0.140 4.140 8 C 0.100 3.900 9 N -0.615 5.615 10 C 0.529 3.471 11 O -0.529 6.529 12 C -0.134 4.134 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.380 0.620 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.015 0.985 45 H 0.016 0.984 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.278 1.711 26.852 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.084 3.916 4 C -0.008 4.008 5 O -0.374 6.374 6 C -0.149 4.149 7 C -0.177 4.177 8 C -0.023 4.023 9 N -0.352 5.352 10 C 0.320 3.680 11 O -0.405 6.405 12 C -0.174 4.174 13 C -0.141 4.141 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.227 0.773 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.067 0.999 26.567 26.607 hybrid contribution 0.198 0.732 -1.000 1.255 sum 1.265 1.731 25.566 25.656 Atomic orbital electron populations 1.21814 0.95707 1.01507 1.01479 1.21791 0.96140 0.94949 1.03315 1.20809 0.91152 0.93133 0.86461 1.22484 0.93179 0.96700 0.88392 1.86380 1.25060 1.83345 1.42646 1.22577 0.97154 0.99420 0.95788 1.22956 0.98547 1.00946 0.95299 1.22382 0.96260 0.89027 0.94622 1.48744 1.52283 1.29200 1.04964 1.20824 0.80464 0.85431 0.81329 1.90687 1.41007 1.28556 1.80230 1.21791 1.01246 0.99557 0.94779 1.21459 1.01660 1.00053 0.90913 1.21644 0.98643 0.97961 0.96486 1.19091 0.96969 0.96230 0.89410 1.21285 1.31562 1.11666 0.91339 0.92766 1.25040 0.95511 0.95265 0.98748 1.69971 1.40665 1.26283 1.16562 0.86615 0.79838 0.80312 0.81343 1.20715 1.21253 1.19912 0.92981 0.92785 0.92621 0.90570 0.90871 0.91995 0.93850 0.77317 0.89902 0.90646 0.90008 0.89926 0.90108 0.91265 0.89263 0.89286 0.91847 0.91798 0.93501 0.93519 0.96627 0.96589 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.53 37.15 0.32 -1.18 16 2 C -0.12 -1.41 4.51 -26.73 -0.12 -1.53 16 3 C 0.17 1.78 0.48 -130.84 -0.06 1.72 16 4 C 0.07 0.77 5.76 37.16 0.21 0.99 16 5 O -0.57 -5.35 12.85 -35.23 -0.45 -5.80 16 6 C -0.11 -0.88 5.11 -24.89 -0.13 -1.01 16 7 C -0.14 -0.90 6.50 -24.58 -0.16 -1.06 16 8 C 0.10 0.78 6.71 -2.35 -0.02 0.77 16 9 N -0.61 -6.81 1.79 -155.56 -0.28 -7.08 16 10 C 0.53 7.58 7.22 -10.98 -0.08 7.50 16 11 O -0.53 -9.50 13.73 5.56 0.08 -9.42 16 12 C -0.13 -1.84 4.72 -27.88 -0.13 -1.97 16 13 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 14 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 15 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 16 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 17 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 20 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.45 6.07 -51.93 -0.32 0.13 16 26 H 0.05 0.63 7.07 -51.93 -0.37 0.26 16 27 H 0.08 1.09 6.90 -51.93 -0.36 0.73 16 28 H 0.07 0.80 7.93 -51.93 -0.41 0.38 16 29 H 0.06 0.82 7.01 -51.93 -0.36 0.46 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.38 2.03 9.12 45.56 0.42 2.44 16 32 H 0.08 0.64 7.65 -51.93 -0.40 0.25 16 33 H 0.07 0.58 7.85 -51.93 -0.41 0.17 16 34 H 0.08 0.53 6.04 -51.93 -0.31 0.22 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.57 7.51 -51.93 -0.39 0.18 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 1.08 7.86 -51.93 -0.41 0.67 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 41 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 357.79 15.07 5.39 5.39 Total: -1.00 -34.04 357.79 -8.03 -42.06 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.51 Total: -1.52 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -0.97 Total: -13.65 kcal Atomic # 7 Polarization: -34.48 SS G_CDS: 0.46 Total: -34.02 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.38 Total: -15.23 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.04 -8.03 -42.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589848748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.943 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds