Wall clock time and date at job start Tue Mar 31 2020 05:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00040 * 2 1 4 4 H 1.48498 * 109.47367 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47043 * 300.00099 * 3 2 1 6 6 H 1.48499 * 109.47154 * 60.00007 * 3 2 1 7 7 C 1.37872 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00686 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99787 * 0.02562 * 7 2 1 10 10 O 1.42900 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.42894 * 114.00075 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47414 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.46714 * 64.58550 * 12 11 10 14 14 C 1.46850 * 111.00276 * 75.72453 * 13 12 11 15 15 C 1.53034 * 109.52341 * 185.83989 * 14 13 12 16 16 C 1.53119 * 109.27618 * 300.81549 * 15 14 13 17 17 C 1.52998 * 109.52382 * 177.56403 * 16 15 14 18 18 H 1.09008 * 110.80267 * 296.37017 * 17 16 15 19 19 C 1.54803 * 110.90817 * 59.99996 * 17 16 15 20 20 C 1.54103 * 104.18855 * 139.08061 * 19 17 16 21 21 O 1.43746 * 107.29414 * 2.03267 * 20 19 17 22 22 C 1.44383 * 106.97187 * 333.48374 * 21 20 19 23 23 C 1.53127 * 109.16146 * 57.65614 * 16 15 14 24 24 C 1.46855 * 110.99717 * 199.93141 * 13 12 11 25 25 H 0.97005 * 119.99710 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47176 * 60.00041 * 9 7 2 27 27 H 1.09001 * 109.47071 * 299.99802 * 9 7 2 28 28 H 1.09006 * 109.47292 * 59.99624 * 11 10 9 29 29 H 1.09002 * 109.47143 * 299.99804 * 11 10 9 30 30 H 1.08997 * 109.47061 * 304.59010 * 12 11 10 31 31 H 1.08995 * 109.47228 * 184.58642 * 12 11 10 32 32 H 1.09000 * 109.45867 * 65.81788 * 14 13 12 33 33 H 1.08999 * 109.45887 * 305.84930 * 14 13 12 34 34 H 1.09001 * 109.50410 * 180.88147 * 15 14 13 35 35 H 1.08997 * 109.53861 * 60.77734 * 15 14 13 36 36 H 1.08996 * 109.52625 * 297.68961 * 16 15 14 37 37 H 1.08995 * 110.49243 * 20.40580 * 19 17 16 38 38 H 1.09010 * 110.48886 * 257.75531 * 19 17 16 39 39 H 1.09000 * 109.87791 * 121.45237 * 20 19 17 40 40 H 1.09001 * 109.87923 * 242.60127 * 20 19 17 41 41 H 1.09001 * 110.61782 * 281.56363 * 22 21 20 42 42 H 1.09000 * 110.74900 * 158.62726 * 22 21 20 43 43 H 1.09005 * 109.49650 * 62.29023 * 23 16 15 44 44 H 1.09003 * 109.50186 * 182.39952 * 23 16 15 45 45 H 1.08999 * 109.46071 * 294.17575 * 24 13 12 46 46 H 1.09003 * 109.45994 * 54.14408 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0017 11 6 1.5651 -4.8753 0.0013 12 6 2.6481 -5.9562 0.0020 13 7 3.4136 -5.8814 1.2535 14 6 2.6483 -6.4446 2.3731 15 6 3.4123 -6.2189 3.6797 16 6 4.7845 -6.8917 3.5856 17 6 5.5770 -6.6183 4.8654 18 1 5.7757 -5.5523 4.9775 19 6 4.8346 -7.1750 6.1045 20 6 5.9513 -7.7943 6.9672 21 8 7.1967 -7.5539 6.2910 22 6 6.8958 -7.4324 4.8841 23 6 5.5421 -6.3221 2.3830 24 6 4.7164 -6.5447 1.1140 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 0.9459 -4.9825 -0.8894 29 1 0.9440 -4.9823 0.8906 30 1 3.3180 -5.7999 -0.8435 31 1 2.1817 -6.9379 -0.0806 32 1 2.5069 -7.5137 2.2149 33 1 1.6764 -5.9546 2.4315 34 1 2.8514 -6.6508 4.5086 35 1 3.5420 -5.1495 3.8462 36 1 4.6553 -7.9667 3.4599 37 1 4.1149 -7.9377 5.8073 38 1 4.3371 -6.3697 6.6451 39 1 5.9657 -7.3220 7.9495 40 1 5.7872 -8.8668 7.0718 41 1 6.7464 -8.4153 4.4372 42 1 7.6877 -6.8923 4.3651 43 1 5.7054 -5.2542 2.5284 44 1 6.5029 -6.8276 2.2854 45 1 4.5653 -7.6134 0.9618 46 1 5.2465 -6.1274 0.2578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590173384.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:49 Heat of formation + Delta-G solvation = -107.176576 kcal Electronic energy + Delta-G solvation = -22894.950802 eV Core-core repulsion = 19590.750500 eV Total energy + Delta-G solvation = -3304.200302 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.13078 -38.62895 -36.57439 -34.68474 -32.66633 -31.50388 -30.81041 -29.63137 -28.11607 -26.60158 -24.28489 -23.36332 -22.29540 -22.23040 -21.17693 -20.45319 -19.78488 -16.74188 -16.47247 -16.31474 -15.72478 -15.55530 -15.40809 -14.85718 -14.30813 -14.25160 -14.20035 -13.79713 -13.74292 -13.38845 -13.11754 -12.86933 -12.33223 -12.20838 -11.97962 -11.81838 -11.64080 -11.37577 -11.18553 -11.13712 -11.01219 -10.76077 -10.74154 -10.61146 -10.52101 -10.20603 -10.13958 -9.93333 -9.84559 -9.01196 -8.74229 -8.08616 -8.00711 -6.05832 -4.06410 3.32398 3.38708 3.45847 3.70183 4.02619 4.25727 4.40013 4.45145 4.60317 4.79505 4.81518 4.87223 5.02234 5.04940 5.15679 5.26203 5.30783 5.36887 5.38827 5.45249 5.47584 5.51941 5.56598 5.60462 5.63456 5.71951 5.72025 5.83089 5.86909 5.96210 6.02185 6.02829 6.12253 6.18702 6.23582 6.33994 6.43869 6.62113 7.17008 7.31578 7.33658 7.50405 7.86613 8.23282 8.69257 9.09212 9.58406 11.05962 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.003308 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.714860 B = 8462.718669 C = 9212.871506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.379 6.379 11 C 0.069 3.931 12 C 0.061 3.939 13 N -0.523 5.523 14 C 0.056 3.944 15 C -0.111 4.111 16 C -0.075 4.075 17 C -0.115 4.115 18 H 0.089 0.911 19 C -0.152 4.152 20 C 0.046 3.954 21 O -0.382 6.382 22 C 0.051 3.949 23 C -0.113 4.113 24 C 0.059 3.941 25 H 0.262 0.738 26 H 0.001 0.999 27 H 0.002 0.998 28 H 0.037 0.963 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.025 0.975 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.024 0.976 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.000 -18.725 9.154 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.546 4.546 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.299 6.299 11 C -0.009 4.009 12 C -0.066 4.066 13 N -0.248 5.248 14 C -0.072 4.072 15 C -0.148 4.148 16 C -0.094 4.094 17 C -0.133 4.133 18 H 0.107 0.893 19 C -0.190 4.190 20 C -0.031 4.031 21 O -0.301 6.301 22 C -0.026 4.026 23 C -0.150 4.150 24 C -0.069 4.069 25 H 0.072 0.928 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.043 0.957 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.343 -18.066 9.355 22.387 hybrid contribution -0.520 -0.015 -0.285 0.593 sum 8.823 -18.081 9.070 22.069 Atomic orbital electron populations 1.69979 1.06100 1.26897 1.51072 1.24950 0.94956 0.99403 0.95332 0.86305 0.80093 0.82706 0.77541 1.19458 1.20927 1.20903 1.21107 0.94107 0.89361 1.50063 0.91499 1.20165 0.88867 0.83979 0.95012 1.87936 1.34615 1.12339 1.94993 1.22214 0.93822 0.86294 0.98564 1.22127 0.96343 0.96050 0.92117 1.61763 1.03128 1.55888 1.03974 1.22105 0.97610 0.96308 0.91132 1.21640 0.94647 1.02130 0.96427 1.21167 0.95256 0.99585 0.93369 1.22795 0.94854 1.01187 0.94508 0.89271 1.23012 0.98408 1.01178 0.96375 1.23159 0.83703 0.99549 0.96664 1.88863 1.28959 1.93310 1.18958 1.23643 0.97075 0.99061 0.82776 1.21664 0.97406 1.02426 0.93549 1.22057 0.90799 0.95666 0.98371 0.92829 0.98107 0.98000 0.94528 0.94772 0.90330 0.94339 0.95716 0.90485 0.91789 0.90464 0.91607 0.90549 0.90309 0.90048 0.92671 0.92309 0.88915 0.90441 0.91851 0.95742 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.91 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -15.27 9.43 -34.44 -0.32 -15.59 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.19 5.45 5.69 36.01 0.20 5.66 16 10 O -0.38 -9.39 10.27 -35.23 -0.36 -9.75 16 11 C 0.07 1.31 6.13 37.16 0.23 1.54 16 12 C 0.06 0.93 5.39 -3.82 -0.02 0.91 16 13 N -0.52 -7.77 4.53 -234.67 -1.06 -8.83 16 14 C 0.06 0.73 5.29 -3.83 -0.02 0.71 16 15 C -0.11 -1.25 5.10 -26.65 -0.14 -1.38 16 16 C -0.08 -0.72 1.67 -90.49 -0.15 -0.87 16 17 C -0.11 -1.04 2.66 -88.62 -0.24 -1.28 16 18 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 19 C -0.15 -1.23 5.66 -25.21 -0.14 -1.37 16 20 C 0.05 0.39 7.70 37.73 0.29 0.68 16 21 O -0.38 -4.20 11.52 -35.23 -0.41 -4.61 16 22 C 0.05 0.46 6.45 38.21 0.25 0.71 16 23 C -0.11 -1.20 5.20 -26.65 -0.14 -1.34 16 24 C 0.06 0.72 5.43 -3.83 -0.02 0.70 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 27 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.03 0.63 6.71 -51.93 -0.35 0.29 16 30 H 0.08 1.19 7.79 -51.93 -0.40 0.78 16 31 H 0.04 0.49 8.00 -51.93 -0.42 0.08 16 32 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 1.09 6.65 -51.93 -0.35 0.74 16 34 H 0.06 0.62 7.15 -51.93 -0.37 0.25 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 37 H 0.08 0.57 7.49 -51.93 -0.39 0.18 16 38 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.48 8.01 -51.93 -0.42 0.07 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.56 7.63 -51.93 -0.40 0.16 16 45 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.08 0.94 7.93 -51.93 -0.41 0.53 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -32.52 356.98 -9.59 -42.11 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -8.54 Total: -5.39 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -0.32 Total: -9.45 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.33 Total: -35.46 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.77 Total: -14.36 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.52 -9.59 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590173384.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.071 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds