Wall clock time and date at job start Tue Mar 31 2020 05:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00483 * 2 1 4 4 H 1.48498 * 109.47410 * 269.99873 * 3 2 1 5 5 H 1.48509 * 109.46909 * 30.00067 * 3 2 1 6 6 H 1.48502 * 109.47342 * 149.99689 * 3 2 1 7 7 C 1.37883 * 119.99525 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00353 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99528 * 180.02562 * 7 2 1 10 10 O 1.42901 * 109.46784 * 180.02562 * 9 7 2 11 11 C 1.42904 * 114.00132 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47133 * 179.97438 * 11 10 9 13 13 N 1.46907 * 109.47115 * 66.29847 * 12 11 10 14 14 C 1.46848 * 110.99605 * 284.17899 * 13 12 11 15 15 C 1.53041 * 109.51882 * 185.83617 * 14 13 12 16 16 C 1.53112 * 109.28038 * 300.82182 * 15 14 13 17 17 C 1.52999 * 109.52461 * 177.55954 * 16 15 14 18 18 H 1.09001 * 111.02247 * 297.36022 * 17 16 15 19 19 C 1.55569 * 111.22826 * 173.05085 * 17 16 15 20 20 C 1.54373 * 102.27575 * 207.98587 * 19 17 16 21 21 O 1.43232 * 107.59296 * 21.35863 * 20 19 17 22 22 C 1.43646 * 109.96992 * 1.70707 * 21 20 19 23 23 C 1.53117 * 109.21646 * 57.62018 * 16 15 14 24 24 C 1.46849 * 110.99728 * 48.38353 * 13 12 11 25 25 H 0.96998 * 119.99616 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47214 * 60.00376 * 9 7 2 27 27 H 1.08999 * 109.47335 * 300.00068 * 9 7 2 28 28 H 1.09007 * 109.46556 * 59.99718 * 11 10 9 29 29 H 1.08994 * 109.46895 * 300.00163 * 11 10 9 30 30 H 1.09000 * 109.47671 * 306.29639 * 12 11 10 31 31 H 1.08999 * 109.47017 * 186.29680 * 12 11 10 32 32 H 1.08999 * 109.46179 * 65.82479 * 14 13 12 33 33 H 1.08994 * 109.46348 * 305.85004 * 14 13 12 34 34 H 1.08998 * 109.50143 * 180.87429 * 15 14 13 35 35 H 1.09000 * 109.53279 * 60.78131 * 15 14 13 36 36 H 1.09004 * 109.52539 * 297.68591 * 16 15 14 37 37 H 1.08998 * 110.83581 * 89.78005 * 19 17 16 38 38 H 1.09001 * 111.01042 * 326.26500 * 19 17 16 39 39 H 1.09006 * 109.82831 * 261.83961 * 20 19 17 40 40 H 1.09002 * 109.91038 * 140.91398 * 20 19 17 41 41 H 1.08999 * 110.30968 * 94.49243 * 22 21 20 42 42 H 1.09004 * 110.31479 * 216.56218 * 22 21 20 43 43 H 1.09005 * 109.50252 * 62.32194 * 23 16 15 44 44 H 1.09003 * 109.50964 * 182.43836 * 23 16 15 45 45 H 1.08997 * 109.46659 * 294.18435 * 24 13 12 46 46 H 1.09004 * 109.45900 * 54.14860 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 8 3.9878 -2.5415 0.0010 11 6 5.4123 -2.6544 0.0009 12 6 5.8067 -4.1327 0.0015 13 7 5.3949 -4.7498 -1.2665 14 6 3.9464 -4.9901 -1.2887 15 6 3.5756 -5.7624 -2.5569 16 6 3.9960 -4.9500 -3.7847 17 6 3.6831 -5.7438 -5.0547 18 1 4.2542 -6.6717 -5.0865 19 6 3.9322 -4.8878 -6.3296 20 6 2.9400 -5.5051 -7.3384 21 8 1.9259 -6.1836 -6.5883 22 6 2.1635 -6.0188 -5.1812 23 6 5.4997 -4.6705 -3.7134 24 6 5.8150 -3.9312 -2.4110 25 1 -0.4849 0.8401 -0.0004 26 1 3.8745 -0.6802 0.8911 27 1 3.8752 -0.6805 -0.8888 28 1 5.8151 -2.1709 0.8910 29 1 5.8151 -2.1709 -0.8890 30 1 5.3127 -4.6403 0.8299 31 1 6.8873 -4.2204 0.1141 32 1 3.4198 -4.0358 -1.2776 33 1 3.6614 -5.5723 -0.4125 34 1 2.4984 -5.9271 -2.5807 35 1 4.0907 -6.7230 -2.5623 36 1 3.4506 -4.0063 -3.8014 37 1 4.9592 -4.9999 -6.6773 38 1 3.6984 -3.8388 -6.1479 39 1 3.4605 -6.2142 -7.9822 40 1 2.4886 -4.7189 -7.9436 41 1 1.5928 -5.1731 -4.7976 42 1 1.8977 -6.9289 -4.6434 43 1 6.0466 -5.6132 -3.7372 44 1 5.7964 -4.0555 -4.5630 45 1 5.2796 -2.9819 -2.3946 46 1 6.8872 -3.7444 -2.3498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590173385.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:52 Heat of formation + Delta-G solvation = -102.979242 kcal Electronic energy + Delta-G solvation = -23646.328524 eV Core-core repulsion = 20342.310232 eV Total energy + Delta-G solvation = -3304.018292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.99495 -38.76099 -36.75468 -34.59467 -32.67193 -31.42324 -30.69842 -29.54597 -28.34020 -27.05229 -24.32262 -23.19135 -22.13128 -21.95211 -21.40044 -20.37186 -19.41157 -16.94898 -16.62223 -16.30217 -15.76350 -15.67265 -15.15238 -14.92499 -14.63511 -14.28050 -13.85195 -13.65719 -13.46563 -13.29894 -13.24348 -12.70182 -12.31675 -12.23000 -12.10055 -11.76794 -11.56842 -11.51008 -11.29429 -11.04246 -10.94259 -10.86613 -10.85884 -10.62371 -10.49851 -10.02457 -10.00053 -9.91085 -9.56715 -9.25572 -8.91792 -8.54659 -7.88830 -6.17518 -4.16978 3.19039 3.26791 3.27616 3.82085 4.16442 4.29716 4.33044 4.57782 4.63517 4.77121 4.96581 5.01474 5.13869 5.15708 5.20184 5.28714 5.41694 5.46820 5.53544 5.57997 5.61958 5.63270 5.70775 5.77264 5.80199 5.81306 5.85180 5.88774 5.96712 6.02667 6.09869 6.13602 6.21486 6.27418 6.37772 6.44974 6.53563 6.77138 6.92325 6.92973 7.34661 7.39544 7.53422 7.92365 8.58234 8.92773 9.41670 10.95307 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.004755 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.128450 B = 5887.271588 C = 7049.971134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.874 3.126 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.082 0.918 9 C 0.168 3.832 10 O -0.375 6.375 11 C 0.018 3.982 12 C 0.058 3.942 13 N -0.532 5.532 14 C 0.045 3.955 15 C -0.110 4.110 16 C -0.078 4.078 17 C -0.113 4.113 18 H 0.084 0.916 19 C -0.152 4.152 20 C 0.051 3.949 21 O -0.389 6.389 22 C 0.053 3.947 23 C -0.105 4.105 24 C 0.049 3.951 25 H 0.267 0.733 26 H 0.002 0.998 27 H -0.005 1.005 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.044 0.956 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.300 -10.423 -9.588 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.557 4.557 8 H 0.100 0.900 9 C 0.093 3.907 10 O -0.294 6.294 11 C -0.061 4.061 12 C -0.070 4.070 13 N -0.256 5.256 14 C -0.082 4.082 15 C -0.147 4.147 16 C -0.097 4.097 17 C -0.131 4.131 18 H 0.103 0.897 19 C -0.190 4.190 20 C -0.026 4.026 21 O -0.308 6.308 22 C -0.023 4.023 23 C -0.143 4.143 24 C -0.079 4.079 25 H 0.077 0.923 26 H 0.019 0.981 27 H 0.013 0.987 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.062 0.938 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.060 -11.030 -9.716 19.013 hybrid contribution 0.399 2.244 0.196 2.288 sum 12.459 -8.786 -9.519 17.973 Atomic orbital electron populations 1.69872 1.06026 1.27122 1.50126 1.24758 0.94777 0.98699 0.94598 0.86877 0.80358 0.83915 0.78745 1.19981 1.20702 1.19203 1.20853 0.88128 0.95255 1.51426 0.89984 1.20594 0.96217 0.79734 0.94164 1.87937 1.17323 1.29281 1.94843 1.23163 0.85322 0.98062 0.99586 1.22243 1.00176 0.91767 0.92807 1.62222 1.15639 1.46028 1.01672 1.22296 0.87450 1.01438 0.97033 1.21648 1.00531 0.98731 0.93836 1.21149 0.96633 0.98898 0.92987 1.22935 0.96369 0.99118 0.94727 0.89718 1.23234 1.00083 1.00626 0.95050 1.23087 0.89104 0.95921 0.94448 1.88382 1.49902 1.75020 1.17514 1.23502 0.95006 1.01874 0.81910 1.21579 0.95523 1.00652 0.96530 1.22108 0.99760 0.95428 0.90601 0.92323 0.98076 0.98748 0.94233 0.93978 0.90169 0.90100 0.90475 0.91350 0.91611 0.91852 0.90615 0.90213 0.90256 0.91680 0.91683 0.91619 0.89727 0.91527 0.91956 0.93775 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.21 13.96 55.43 0.77 -26.43 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -15.05 9.99 -34.44 -0.34 -15.39 16 8 H 0.08 2.60 8.06 -52.49 -0.42 2.18 16 9 C 0.17 4.17 4.76 36.01 0.17 4.34 16 10 O -0.37 -8.22 7.55 -35.23 -0.27 -8.49 16 11 C 0.02 0.30 5.52 37.16 0.21 0.50 16 12 C 0.06 0.82 6.01 -3.82 -0.02 0.80 16 13 N -0.53 -7.58 4.86 -234.66 -1.14 -8.72 16 14 C 0.05 0.70 4.96 -3.83 -0.02 0.68 16 15 C -0.11 -1.42 5.13 -26.65 -0.14 -1.56 16 16 C -0.08 -0.94 1.76 -90.50 -0.16 -1.10 16 17 C -0.11 -1.20 2.62 -88.23 -0.23 -1.43 16 18 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 19 C -0.15 -1.48 5.78 -24.64 -0.14 -1.62 16 20 C 0.05 0.53 7.79 37.88 0.30 0.82 16 21 O -0.39 -5.14 11.36 -35.23 -0.40 -5.54 16 22 C 0.05 0.64 6.25 38.19 0.24 0.87 16 23 C -0.11 -1.19 5.21 -26.65 -0.14 -1.33 16 24 C 0.05 0.65 4.49 -3.83 -0.02 0.63 16 25 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.00 0.04 7.20 -51.93 -0.37 -0.34 16 27 H -0.01 -0.12 7.57 -51.93 -0.39 -0.52 16 28 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.04 0.69 6.05 -51.93 -0.31 0.38 16 30 H 0.08 1.16 7.87 -51.93 -0.41 0.75 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.08 1.50 5.80 -51.93 -0.30 1.20 16 33 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 34 H 0.07 0.84 7.44 -51.93 -0.39 0.45 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.08 8.11 -51.93 -0.42 0.66 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.81 8.02 -51.93 -0.42 0.40 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.84 8.03 -51.93 -0.42 0.43 16 42 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.64 7.64 -51.93 -0.40 0.24 16 45 H 0.04 0.69 6.45 -51.93 -0.33 0.36 16 46 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 LS Contribution 347.58 15.07 5.24 5.24 Total: -1.00 -30.82 347.58 -9.25 -40.08 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -8.39 Total: -0.94 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.40 Total: -11.73 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.37 Total: -35.15 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.67 Total: -14.04 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.82 -9.25 -40.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590173385.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.902 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds