Wall clock time and date at job start Tue Mar 31 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42892 * 114.00068 * 2 1 4 4 C 1.53002 * 109.47140 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47202 * 64.61123 * 4 3 2 6 6 C 1.37107 * 120.00007 * 86.57285 * 5 4 3 7 7 H 1.08001 * 119.99565 * 308.33789 * 6 5 4 8 8 C 1.38942 * 120.00212 * 128.34000 * 6 5 4 9 9 N 1.31420 * 119.99936 * 162.45849 * 8 6 5 10 10 Si 1.86799 * 119.99999 * 342.46519 * 8 6 5 11 11 H 1.48498 * 109.47345 * 87.15089 * 10 8 6 12 12 H 1.48507 * 109.46988 * 207.15000 * 10 8 6 13 13 H 1.48503 * 109.47178 * 327.14924 * 10 8 6 14 14 C 1.34775 * 120.00410 * 266.57049 * 5 4 3 15 15 O 1.21297 * 119.99840 * 354.31089 * 14 5 4 16 16 C 1.50696 * 120.00436 * 174.30945 * 14 5 4 17 17 H 1.08997 * 115.54752 * 35.06098 * 16 14 5 18 18 C 1.52997 * 117.50116 * 249.35435 * 16 14 5 19 19 C 1.53000 * 117.50057 * 180.73002 * 16 14 5 20 20 H 1.08996 * 117.49816 * 359.97438 * 19 16 14 21 21 C 1.52999 * 117.49817 * 214.98346 * 19 16 14 22 22 C 1.52999 * 109.46919 * 174.99892 * 21 19 16 23 23 C 1.52999 * 109.47285 * 59.99975 * 22 21 19 24 24 C 1.53006 * 109.47089 * 179.97438 * 22 21 19 25 25 C 1.52994 * 109.47338 * 299.99823 * 22 21 19 26 26 H 1.09000 * 109.47161 * 59.99921 * 1 2 3 27 27 H 1.08997 * 109.47043 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46783 * 300.00309 * 1 2 3 29 29 H 1.08991 * 109.47523 * 60.00147 * 3 2 1 30 30 H 1.09003 * 109.46844 * 299.99509 * 3 2 1 31 31 H 1.09001 * 109.46940 * 304.61178 * 4 3 2 32 32 H 1.09003 * 109.47040 * 184.60881 * 4 3 2 33 33 H 0.96997 * 119.99962 * 180.02562 * 9 8 6 34 34 H 1.09006 * 117.49961 * 359.97438 * 18 16 14 35 35 H 1.09000 * 117.50402 * 145.01932 * 18 16 14 36 36 H 1.09003 * 109.46624 * 294.99547 * 21 19 16 37 37 H 1.08995 * 109.47481 * 54.99976 * 21 19 16 38 38 H 1.09003 * 109.47551 * 59.99553 * 23 22 21 39 39 H 1.09002 * 109.47568 * 179.97438 * 23 22 21 40 40 H 1.09006 * 109.47044 * 299.99552 * 23 22 21 41 41 H 1.09003 * 109.46784 * 60.00009 * 24 22 21 42 42 H 1.08998 * 109.47273 * 179.97438 * 24 22 21 43 43 H 1.08994 * 109.47329 * 300.00061 * 24 22 21 44 44 H 1.08996 * 109.47111 * 59.99754 * 25 22 21 45 45 H 1.08998 * 109.47576 * 180.02562 * 25 22 21 46 46 H 1.09003 * 109.46837 * 300.00175 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9750 0.5559 -1.2487 6 6 4.1975 1.3244 -2.3622 7 1 3.4387 2.0130 -2.7034 8 6 5.3991 1.2172 -3.0515 9 7 5.4939 1.6710 -4.2812 10 14 6.8798 0.4280 -2.2304 11 1 6.8414 -1.0406 -2.4465 12 1 8.1258 0.9825 -2.8183 13 1 6.8495 0.7150 -0.7737 14 6 4.1607 -0.7779 -1.3026 15 8 4.0647 -1.4448 -0.2939 16 6 4.4877 -1.4409 -2.6158 17 1 5.1136 -0.8596 -3.2928 18 6 3.4183 -2.3403 -3.2387 19 6 4.6701 -2.9600 -2.6142 20 1 4.5539 -3.4798 -1.6633 21 6 5.7167 -3.5468 -3.5635 22 6 5.8343 -5.0535 -3.3243 23 6 4.4808 -5.7182 -3.5835 24 6 6.8805 -5.6405 -4.2740 25 6 6.2587 -5.3085 -1.8767 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6887 1.8463 0.8899 30 1 1.6886 1.8462 -0.8901 31 1 3.8519 0.5738 0.8449 32 1 3.9786 2.1770 0.0819 33 1 6.3326 1.5959 -4.7626 34 1 2.4783 -2.4530 -2.6985 35 1 3.3403 -2.3509 -4.3259 36 1 5.4142 -3.3652 -4.5948 37 1 6.6809 -3.0733 -3.3788 38 1 4.1783 -5.5365 -4.6149 39 1 4.5647 -6.7916 -3.4136 40 1 3.7352 -5.3001 -2.9072 41 1 7.8448 -5.1669 -4.0897 42 1 6.9646 -6.7137 -4.1034 43 1 6.5777 -5.4589 -5.3052 44 1 5.5132 -4.8903 -1.2005 45 1 6.3430 -6.3818 -1.7064 46 1 7.2230 -4.8349 -1.6921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592804682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:29 Heat of formation + Delta-G solvation = -62.203114 kcal Electronic energy + Delta-G solvation = -24174.215835 eV Core-core repulsion = 20871.965728 eV Total energy + Delta-G solvation = -3302.250107 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.35715 -37.95264 -37.06923 -35.08304 -34.48830 -32.13741 -29.46153 -27.33393 -27.07222 -27.01602 -25.95710 -24.53918 -23.65378 -21.39835 -20.46424 -18.97948 -18.44768 -17.25785 -16.04133 -15.70755 -15.45091 -14.93695 -14.64203 -14.43356 -14.38900 -14.06630 -13.80058 -13.40854 -13.15890 -12.85888 -12.51668 -12.29127 -12.13879 -12.02131 -11.72722 -11.54042 -11.50946 -11.38307 -11.17219 -11.13082 -10.88796 -10.63480 -10.54310 -10.47190 -10.31596 -10.10328 -10.05145 -9.28060 -9.19504 -9.15379 -8.86196 -8.46306 -7.51601 -6.44455 -4.18669 3.19483 3.25215 3.36633 3.70644 4.16828 4.31237 4.38335 4.72635 4.92692 4.98287 5.04974 5.08615 5.52553 5.57209 5.63203 5.66519 5.69802 5.73880 5.81696 5.83223 5.87141 5.91180 5.92441 5.94284 5.95010 6.00979 6.03877 6.12345 6.20075 6.26297 6.33140 6.34546 6.38331 6.44253 6.51707 6.61304 6.65122 6.67943 6.89932 7.06481 7.67197 7.75520 7.82947 8.50909 9.04786 9.37084 9.83386 10.65060 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014669 B = 0.006712 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.349511 B = 4170.402005 C = 5297.724132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.051 3.949 4 C 0.110 3.890 5 N -0.468 5.468 6 C -0.341 4.341 7 H 0.094 0.906 8 C 0.075 3.925 9 N -0.864 5.864 10 Si 0.849 3.151 11 H -0.249 1.249 12 H -0.286 1.286 13 H -0.265 1.265 14 C 0.524 3.476 15 O -0.582 6.582 16 C -0.161 4.161 17 H 0.130 0.870 18 C -0.146 4.146 19 C -0.135 4.135 20 H 0.113 0.887 21 C -0.079 4.079 22 C -0.067 4.067 23 C -0.138 4.138 24 C -0.140 4.140 25 C -0.144 4.144 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.275 0.725 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 -8.215 1.581 8.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.026 4.026 4 C -0.014 4.014 5 N -0.189 5.189 6 C -0.468 4.468 7 H 0.112 0.888 8 C -0.132 4.132 9 N -0.499 5.499 10 Si 0.673 3.327 11 H -0.174 1.174 12 H -0.213 1.213 13 H -0.190 1.190 14 C 0.314 3.686 15 O -0.465 6.465 16 C -0.182 4.182 17 H 0.147 0.853 18 C -0.184 4.184 19 C -0.154 4.154 20 H 0.131 0.869 21 C -0.117 4.117 22 C -0.067 4.067 23 C -0.195 4.195 24 C -0.197 4.197 25 C -0.201 4.201 26 H 0.054 0.946 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.250 -8.638 1.919 9.131 hybrid contribution 0.596 0.338 0.162 0.704 sum -1.655 -8.300 2.081 8.716 Atomic orbital electron populations 1.22644 0.82774 1.01917 0.99072 1.88091 1.18021 1.27682 1.95130 1.22974 0.95643 0.84729 0.99290 1.21487 0.91325 0.98776 0.89823 1.43452 1.61514 1.04468 1.09514 1.18874 1.01679 1.23671 1.02608 0.88795 1.25560 0.97579 0.94991 0.95051 1.69729 1.27128 1.44162 1.08884 0.87475 0.82588 0.81416 0.81200 1.17352 1.21269 1.18955 1.19614 0.78018 0.82352 0.88601 1.90513 1.55424 1.64101 1.36466 1.22464 1.04565 0.92328 0.98831 0.85250 1.22856 0.93340 1.02754 0.99425 1.22405 0.97783 0.94292 1.00872 0.86871 1.21265 0.98492 0.93559 0.98348 1.20505 0.95443 0.95222 0.95489 1.21851 0.96669 0.99305 1.01684 1.21870 0.98618 1.00170 0.99091 1.21937 1.01647 1.00566 0.95946 0.94622 0.90380 0.94986 0.93930 0.93045 0.90741 0.89802 0.91503 0.89243 0.88990 0.91849 0.91831 0.92929 0.93446 0.91965 0.92883 0.92994 0.92796 0.91762 0.93266 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.52 10.21 -35.23 -0.36 -7.88 16 3 C 0.05 0.96 6.27 37.16 0.23 1.20 16 4 C 0.11 2.34 5.87 -4.04 -0.02 2.31 16 5 N -0.47 -11.59 1.94 -114.81 -0.22 -11.81 16 6 C -0.34 -8.97 9.27 -14.93 -0.14 -9.11 16 7 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 8 C 0.08 1.99 3.90 -17.47 -0.07 1.92 16 9 N -0.86 -23.62 13.96 55.50 0.77 -22.85 16 10 Si 0.85 20.71 24.77 -169.99 -4.21 16.50 16 11 H -0.25 -5.88 5.34 56.52 0.30 -5.57 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.52 13.23 5.30 -10.99 -0.06 13.17 16 15 O -0.58 -15.56 15.67 5.54 0.09 -15.47 16 16 C -0.16 -3.71 3.15 -91.77 -0.29 -4.00 16 17 H 0.13 3.18 3.87 -51.93 -0.20 2.98 16 18 C -0.15 -2.86 9.88 -26.73 -0.26 -3.13 16 19 C -0.14 -2.61 3.77 -90.62 -0.34 -2.95 16 20 H 0.11 2.28 5.58 -51.93 -0.29 1.99 16 21 C -0.08 -1.32 4.55 -26.73 -0.12 -1.44 16 22 C -0.07 -0.91 0.80 -154.51 -0.12 -1.03 16 23 C -0.14 -1.74 8.23 37.16 0.31 -1.44 16 24 C -0.14 -1.66 8.47 37.16 0.31 -1.34 16 25 C -0.14 -1.99 8.23 37.15 0.31 -1.68 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.64 7.26 -51.93 -0.38 1.26 16 32 H 0.08 1.63 8.07 -51.93 -0.42 1.21 16 33 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 35 H 0.09 1.64 8.03 -51.93 -0.42 1.22 16 36 H 0.06 1.01 7.88 -51.93 -0.41 0.60 16 37 H 0.06 1.13 7.55 -51.93 -0.39 0.74 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.85 7.20 -51.93 -0.37 0.47 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.98 6.14 -51.93 -0.32 0.66 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 358.60 15.07 5.40 5.40 Total: -1.00 -30.16 358.60 -6.03 -36.20 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -8.35 Total: 5.81 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 0.84 Total: -5.90 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.55 Total: -34.66 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.27 Total: -23.35 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.21 Total: 16.50 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.16 -6.03 -36.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592804682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.007 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds