Wall clock time and date at job start Tue Mar 31 2020 06:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47379 * 2 1 4 4 C 1.52999 * 109.47353 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47040 * 59.99886 * 4 3 2 6 6 O 1.42896 * 109.47277 * 299.99671 * 4 3 2 7 7 C 1.50706 * 109.46956 * 179.97438 * 4 3 2 8 8 O 1.21279 * 119.99956 * 341.27437 * 7 4 3 9 9 N 1.34774 * 119.99690 * 161.27143 * 7 4 3 10 10 C 1.46933 * 120.63129 * 5.42150 * 9 7 4 11 11 C 1.53628 * 108.54198 * 126.36667 * 10 9 7 12 12 C 1.53045 * 109.24138 * 54.85835 * 11 10 9 13 13 C 1.52997 * 109.44921 * 178.49802 * 12 11 10 14 14 C 1.50710 * 109.46806 * 295.06020 * 13 12 11 15 15 H 1.07995 * 119.99949 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99955 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00062 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00023 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47197 * 60.00058 * 18 16 14 20 20 H 1.48504 * 109.47091 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47173 * 300.00014 * 18 16 14 22 22 C 1.53046 * 109.53693 * 298.51028 * 12 11 10 23 23 C 1.46930 * 120.63141 * 185.69711 * 9 7 4 24 24 H 1.09004 * 109.46527 * 60.00252 * 1 2 3 25 25 H 1.08994 * 109.47097 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47327 * 300.00620 * 1 2 3 27 27 H 1.09001 * 109.47327 * 239.99380 * 2 1 3 28 28 H 1.09000 * 109.46778 * 119.99294 * 2 1 3 29 29 H 1.09001 * 109.47397 * 59.99423 * 3 2 1 30 30 H 1.09007 * 109.47033 * 299.99934 * 3 2 1 31 31 H 1.08994 * 109.46935 * 300.00405 * 5 4 3 32 32 H 1.08997 * 109.46982 * 179.97438 * 5 4 3 33 33 H 1.09007 * 109.46851 * 59.99980 * 5 4 3 34 34 H 0.96701 * 114.00174 * 300.00223 * 6 4 3 35 35 H 1.08996 * 109.58247 * 246.19723 * 10 9 7 36 36 H 1.08998 * 109.58264 * 6.62758 * 10 9 7 37 37 H 1.08992 * 109.63651 * 294.86362 * 11 10 9 38 38 H 1.09002 * 109.42986 * 174.72077 * 11 10 9 39 39 H 1.08995 * 109.46059 * 58.52707 * 12 11 10 40 40 H 1.09004 * 109.47403 * 55.05347 * 13 12 11 41 41 H 1.08999 * 109.47368 * 175.06395 * 13 12 11 42 42 H 0.96992 * 120.00263 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.49439 * 301.41375 * 22 12 11 44 44 H 1.09000 * 109.52283 * 181.33623 * 22 12 11 45 45 H 1.08996 * 109.58615 * 353.37979 * 23 9 7 46 46 H 1.09002 * 109.58506 * 113.65816 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0805 0.7210 -1.2483 6 8 4.0459 0.7691 1.1677 7 6 4.0723 2.8633 0.0000 8 8 3.3368 3.7664 -0.3380 9 7 5.3390 3.1304 0.3752 10 6 6.2772 2.0396 0.6733 11 6 7.5424 2.2378 -0.1754 12 6 8.1057 3.6380 0.0785 13 6 9.3870 3.8270 -0.7361 14 6 10.4435 2.8742 -0.2387 15 1 10.2229 2.2010 0.5764 16 6 11.6916 2.8620 -0.8244 17 7 11.9603 3.6822 -1.8168 18 14 13.0013 1.6816 -0.2075 19 1 12.5202 0.2850 -0.3595 20 1 14.2449 1.8650 -0.9982 21 1 13.2800 1.9561 1.2250 22 6 7.0749 4.6883 -0.3416 23 6 5.8061 4.5179 0.4996 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5137 0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.7171 -0.3066 -1.2483 32 1 5.1705 0.7214 -1.2480 33 1 3.7175 1.2347 -2.1385 34 1 3.7602 1.1727 1.9987 35 1 6.5369 2.0602 1.7317 36 1 5.8160 1.0833 0.4265 37 1 7.2954 2.1310 -1.2316 38 1 8.2859 1.4907 0.1023 39 1 8.3294 3.7526 1.1390 40 1 9.1822 3.6256 -1.7876 41 1 9.7406 4.8520 -0.6246 42 1 12.8382 3.6734 -2.2291 43 1 6.8323 4.5584 -1.3963 44 1 7.4855 5.6855 -0.1829 45 1 5.0341 5.1971 0.1383 46 1 6.0258 4.7371 1.5445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592819418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:53 Heat of formation + Delta-G solvation = -114.400169 kcal Electronic energy + Delta-G solvation = -23688.804961 eV Core-core repulsion = 20384.291420 eV Total energy + Delta-G solvation = -3304.513541 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.66908 -37.96791 -37.04272 -34.60066 -33.82098 -32.13138 -31.40388 -30.43620 -28.06172 -26.97935 -25.13796 -23.58356 -22.79543 -21.79975 -20.73367 -19.84803 -18.91602 -17.62918 -16.32040 -16.11292 -15.93813 -15.60806 -15.01734 -14.55936 -14.23813 -13.99647 -13.69291 -13.61929 -13.36048 -12.85027 -12.76034 -12.58966 -12.43619 -12.27147 -12.19292 -11.86335 -11.78711 -11.65081 -11.20444 -11.14181 -10.99212 -10.83191 -10.74223 -10.70051 -10.59205 -10.38461 -10.10732 -9.69249 -9.34690 -9.13002 -8.96568 -8.36312 -8.31878 -5.99957 -4.02112 2.57605 3.09054 3.32026 3.37115 3.38809 3.92092 4.34858 4.45022 4.55300 4.68311 4.92086 4.99528 5.24555 5.28073 5.35196 5.41319 5.44091 5.52277 5.52588 5.58820 5.61699 5.66297 5.70358 5.72022 5.84009 5.88341 5.94706 6.03070 6.09347 6.13669 6.19902 6.38489 6.40551 6.54726 6.69425 6.97937 7.00834 7.12381 7.24132 7.59038 7.66556 7.81460 7.99700 8.21584 8.42097 9.04255 9.61662 11.11307 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027794 B = 0.003701 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.160960 B = 7564.546263 C = 8142.745859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.128 4.128 4 C 0.122 3.878 5 C -0.146 4.146 6 O -0.542 6.542 7 C 0.487 3.513 8 O -0.549 6.549 9 N -0.593 5.593 10 C 0.094 3.906 11 C -0.120 4.120 12 C -0.081 4.081 13 C 0.028 3.972 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.128 4.128 23 C 0.108 3.892 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.378 0.622 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.225 -6.137 5.075 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.166 4.166 4 C 0.078 3.922 5 C -0.203 4.203 6 O -0.349 6.349 7 C 0.274 3.726 8 O -0.428 6.428 9 N -0.325 5.325 10 C -0.028 4.028 11 C -0.158 4.158 12 C -0.099 4.099 13 C -0.009 4.009 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.166 4.166 23 C -0.014 4.014 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.226 0.774 35 H 0.081 0.919 36 H 0.124 0.876 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.101 0.899 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.178 -5.988 4.330 20.552 hybrid contribution 0.758 -0.119 0.692 1.033 sum -18.420 -6.106 5.021 20.045 Atomic orbital electron populations 1.21775 0.95922 1.01484 1.01794 1.21528 0.95510 0.96061 1.02821 1.22035 0.92926 0.97689 1.03960 1.21369 0.94071 0.88393 0.88332 1.21956 1.02917 1.01205 0.94252 1.86589 1.76118 1.56663 1.15497 1.21403 0.82014 0.91679 0.77544 1.90666 1.56341 1.47523 1.48225 1.48223 1.10552 1.08081 1.65658 1.22410 0.90427 0.90195 0.99735 1.22013 0.95312 0.99374 0.99148 1.21194 0.95970 0.92382 1.00399 1.19119 0.89997 0.96953 0.94830 1.21204 0.96721 1.20137 1.17415 0.92637 1.25024 0.98555 0.95802 0.95091 1.69954 1.22081 1.37539 1.23961 0.86701 0.81167 0.81563 0.78822 1.20245 1.21383 1.20303 1.22005 0.94608 1.00439 0.99564 1.21701 0.97321 0.82383 1.00011 0.92768 0.92759 0.92887 0.91562 0.91279 0.91494 0.90024 0.90335 0.90608 0.90636 0.77379 0.91893 0.87578 0.92506 0.89799 0.92434 0.96695 0.96674 0.92995 0.92148 0.91235 0.89887 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.75 16 2 C -0.12 -0.99 5.44 -26.73 -0.15 -1.14 16 3 C -0.13 -1.27 3.91 -26.73 -0.10 -1.37 16 4 C 0.12 1.35 0.64 -91.77 -0.06 1.29 16 5 C -0.15 -1.57 8.20 37.16 0.30 -1.27 16 6 O -0.54 -5.31 9.42 -35.23 -0.33 -5.64 16 7 C 0.49 7.02 6.62 -10.98 -0.07 6.94 16 8 O -0.55 -9.53 15.44 5.56 0.09 -9.45 16 9 N -0.59 -8.62 2.97 -172.50 -0.51 -9.13 16 10 C 0.09 1.32 5.12 -3.48 -0.02 1.30 16 11 C -0.12 -2.11 5.21 -26.38 -0.14 -2.24 16 12 C -0.08 -1.57 2.10 -90.57 -0.19 -1.76 16 13 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 14 C -0.52 -14.03 8.39 -34.44 -0.29 -14.32 16 15 H 0.06 1.45 7.05 -52.49 -0.37 1.08 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 18 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C -0.13 -2.19 5.36 -26.61 -0.14 -2.34 16 23 C 0.11 1.63 6.44 -3.71 -0.02 1.61 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 28 H 0.07 0.56 7.68 -51.93 -0.40 0.16 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.90 7.91 -51.93 -0.41 0.49 16 31 H 0.08 0.72 6.43 -51.93 -0.33 0.38 16 32 H 0.08 0.89 6.33 -51.93 -0.33 0.56 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.38 2.74 9.04 45.56 0.41 3.16 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.11 1.37 3.64 -51.93 -0.19 1.18 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.57 6.91 -51.93 -0.36 1.21 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.08 1.29 7.00 -51.93 -0.36 0.93 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 351.77 15.07 5.30 5.30 Total: -1.00 -31.08 351.77 -7.78 -38.86 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -7.31 Total: 1.71 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -0.73 Total: -11.98 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.22 Total: -35.08 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.25 Total: -15.09 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.08 -7.78 -38.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592819418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.540 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds