Wall clock time and date at job start Tue Mar 31 2020 06:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47065 * 2 1 4 4 C 1.52996 * 109.47333 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47248 * 304.99893 * 4 3 2 6 6 O 1.42895 * 109.47390 * 64.99809 * 4 3 2 7 7 C 1.50699 * 109.47278 * 185.00012 * 4 3 2 8 8 O 1.21280 * 119.99880 * 12.77004 * 7 4 3 9 9 N 1.34779 * 120.00027 * 192.76724 * 7 4 3 10 10 C 1.46928 * 120.62962 * 183.40569 * 9 7 4 11 11 C 1.53625 * 108.53935 * 126.37491 * 10 9 7 12 12 C 1.53039 * 109.24529 * 54.85640 * 11 10 9 13 13 C 1.52998 * 109.45742 * 178.49123 * 12 11 10 14 14 C 1.50699 * 109.47384 * 295.06405 * 13 12 11 15 15 H 1.07998 * 119.99493 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00215 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00250 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00268 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47190 * 89.99474 * 18 16 14 20 20 H 1.48497 * 109.47458 * 210.00054 * 18 16 14 21 21 H 1.48509 * 109.46792 * 329.99923 * 18 16 14 22 22 C 1.53043 * 109.53457 * 298.50949 * 12 11 10 23 23 C 1.46924 * 120.62899 * 3.69222 * 9 7 4 24 24 H 1.09003 * 109.46945 * 60.00177 * 1 2 3 25 25 H 1.08997 * 109.47193 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47077 * 300.00351 * 1 2 3 27 27 H 1.08999 * 109.46965 * 240.00383 * 2 1 3 28 28 H 1.08998 * 109.47368 * 119.99965 * 2 1 3 29 29 H 1.09001 * 109.47122 * 59.99868 * 3 2 1 30 30 H 1.09003 * 109.47094 * 299.99731 * 3 2 1 31 31 H 1.08998 * 109.46870 * 300.00538 * 5 4 3 32 32 H 1.08995 * 109.47528 * 180.02562 * 5 4 3 33 33 H 1.09008 * 109.46899 * 59.99631 * 5 4 3 34 34 H 0.96703 * 114.00480 * 60.00090 * 6 4 3 35 35 H 1.08998 * 109.58298 * 246.20257 * 10 9 7 36 36 H 1.08997 * 109.58941 * 6.62958 * 10 9 7 37 37 H 1.09004 * 109.63017 * 294.85830 * 11 10 9 38 38 H 1.09003 * 109.45653 * 174.74229 * 11 10 9 39 39 H 1.08993 * 109.44979 * 58.52376 * 12 11 10 40 40 H 1.09004 * 109.47589 * 55.06831 * 13 12 11 41 41 H 1.09001 * 109.47107 * 175.06479 * 13 12 11 42 42 H 0.96990 * 120.00272 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.49871 * 301.41447 * 22 12 11 44 44 H 1.09005 * 109.51700 * 181.33501 * 22 12 11 45 45 H 1.08996 * 109.58633 * 353.36682 * 23 9 7 46 46 H 1.09000 * 109.59130 * 113.65668 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0806 0.6151 1.1807 6 8 4.0459 0.8734 -1.2219 7 6 4.0723 2.8580 0.1232 8 8 3.3088 3.7474 0.4345 9 7 5.3701 3.1355 -0.1120 10 6 5.8908 4.4964 0.0768 11 6 7.1055 4.4289 1.0147 12 6 8.1259 3.4389 0.4482 13 6 9.3544 3.3960 1.3592 14 6 10.0428 4.7364 1.3378 15 1 9.6437 5.5387 0.7350 16 6 11.1820 4.9383 2.0876 17 7 11.7826 6.1083 2.0693 18 14 11.8728 3.5503 3.1295 19 1 12.8411 2.7624 2.3254 20 1 12.5611 4.1177 4.3166 21 1 10.7649 2.6672 3.5748 22 6 7.4987 2.0450 0.3720 23 6 6.2896 2.0842 -0.5680 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.7175 1.0492 2.1122 32 1 5.1705 0.6155 1.1805 33 1 3.7171 -0.4087 1.0911 34 1 3.7602 1.3479 -2.0146 35 1 6.1916 4.9092 -0.8861 36 1 5.1188 5.1247 0.5210 37 1 6.7870 4.0976 2.0032 38 1 7.5605 5.4165 1.0912 39 1 8.4251 3.7576 -0.5502 40 1 9.0436 3.1634 2.3777 41 1 10.0426 2.6284 1.0051 42 1 12.5842 6.2503 2.5965 43 1 7.1765 1.7361 1.3664 44 1 8.2332 1.3355 -0.0093 45 1 5.7809 1.1204 -0.5492 46 1 6.6205 2.3031 -1.5832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592819421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:56 Heat of formation + Delta-G solvation = -109.683659 kcal Electronic energy + Delta-G solvation = -23709.143023 eV Core-core repulsion = 20404.834005 eV Total energy + Delta-G solvation = -3304.309018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.73669 -38.03704 -37.11546 -34.69325 -33.90737 -32.12112 -31.47022 -30.48910 -28.60307 -27.01654 -25.14138 -23.81423 -22.71381 -21.63368 -20.72006 -19.85306 -18.96924 -17.75136 -16.69504 -16.21598 -15.97687 -15.68387 -15.09986 -14.38815 -14.21676 -14.02686 -13.86456 -13.72728 -13.29294 -13.02225 -12.89622 -12.61649 -12.54291 -12.32326 -12.24844 -12.18261 -11.88224 -11.64771 -11.45157 -11.21513 -11.12561 -10.84843 -10.83634 -10.66718 -10.59830 -10.33450 -9.81700 -9.73604 -9.56159 -9.24745 -9.00735 -8.53835 -8.40502 -6.04602 -4.02052 2.53210 3.05678 3.29547 3.37516 3.40741 3.84946 4.28782 4.44667 4.49807 4.63914 4.87416 4.95800 5.19142 5.20257 5.28049 5.35562 5.37239 5.41838 5.48855 5.54197 5.57140 5.63318 5.64008 5.67764 5.79511 5.85607 5.90026 5.94129 6.04378 6.09483 6.12491 6.29153 6.31553 6.44012 6.58155 6.82823 6.87484 7.00183 7.17137 7.23971 7.43183 7.55113 7.79589 8.18129 8.53514 9.00200 9.58372 11.08730 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034044 B = 0.003613 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.264745 B = 7747.568530 C = 8061.123699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.129 4.129 4 C 0.122 3.878 5 C -0.147 4.147 6 O -0.543 6.543 7 C 0.486 3.514 8 O -0.546 6.546 9 N -0.592 5.592 10 C 0.105 3.895 11 C -0.117 4.117 12 C -0.072 4.072 13 C -0.009 4.009 14 C -0.516 4.516 15 H 0.073 0.927 16 C 0.065 3.935 17 N -0.904 5.904 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C -0.135 4.135 23 C 0.091 3.909 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.379 0.621 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.014 0.986 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.113 0.887 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.713 -13.330 -5.829 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.167 4.167 4 C 0.079 3.921 5 C -0.204 4.204 6 O -0.350 6.350 7 C 0.272 3.728 8 O -0.424 6.424 9 N -0.325 5.325 10 C -0.017 4.017 11 C -0.155 4.155 12 C -0.091 4.091 13 C -0.046 4.046 14 C -0.554 4.554 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.706 3.294 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.173 4.173 23 C -0.031 4.031 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.228 0.772 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.131 0.869 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.677 -13.174 -5.179 23.435 hybrid contribution 0.468 -0.099 0.214 0.523 sum -18.209 -13.273 -4.966 23.074 Atomic orbital electron populations 1.21775 0.95880 1.01491 1.01851 1.21558 0.95611 0.96113 1.02715 1.22042 0.92893 0.97660 1.04086 1.21394 0.94170 0.89503 0.87072 1.21973 1.02823 1.00382 0.95201 1.86539 1.75888 1.57341 1.15246 1.21373 0.82297 0.91342 0.77756 1.90680 1.55372 1.48045 1.48348 1.48224 1.08272 1.11159 1.64809 1.21910 0.97156 0.82504 1.00141 1.21960 0.93836 1.02107 0.97628 1.21008 0.95632 0.92215 1.00258 1.19615 0.92741 0.97635 0.94627 1.21142 1.09562 0.96928 1.27753 0.90877 1.25035 0.96672 0.95381 0.96475 1.69913 1.20019 1.22695 1.41724 0.86801 0.79419 0.82870 0.80298 1.20381 1.21504 1.19093 1.22105 0.96548 0.99331 0.99319 1.22296 0.91069 0.92113 0.97591 0.92851 0.92763 0.92736 0.91340 0.91544 0.89950 0.91368 0.90643 0.90723 0.90291 0.77209 0.91711 0.89737 0.92499 0.89338 0.91822 0.96745 0.97071 0.92801 0.92207 0.91148 0.86941 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.95 5.34 -26.73 -0.14 -1.09 16 3 C -0.13 -1.23 3.97 -26.73 -0.11 -1.33 16 4 C 0.12 1.27 0.65 -91.77 -0.06 1.21 16 5 C -0.15 -1.45 8.06 37.16 0.30 -1.15 16 6 O -0.54 -4.86 9.58 -35.23 -0.34 -5.20 16 7 C 0.49 6.81 6.67 -10.99 -0.07 6.74 16 8 O -0.55 -9.41 15.30 5.56 0.09 -9.33 16 9 N -0.59 -8.37 2.97 -172.51 -0.51 -8.88 16 10 C 0.10 1.65 6.45 -3.48 -0.02 1.62 16 11 C -0.12 -2.12 5.21 -26.39 -0.14 -2.26 16 12 C -0.07 -1.35 2.10 -90.58 -0.19 -1.54 16 13 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 14 C -0.52 -14.23 8.94 -34.44 -0.31 -14.54 16 15 H 0.07 2.16 7.30 -52.49 -0.38 1.77 16 16 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 17 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 18 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 22 C -0.13 -2.01 5.28 -26.61 -0.14 -2.15 16 23 C 0.09 1.15 5.07 -3.71 -0.02 1.13 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.52 7.82 -51.93 -0.41 0.12 16 28 H 0.07 0.50 6.35 -51.93 -0.33 0.17 16 29 H 0.08 0.90 7.78 -51.93 -0.40 0.50 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.79 5.95 -51.93 -0.31 0.48 16 33 H 0.08 0.65 6.35 -51.92 -0.33 0.32 16 34 H 0.38 2.46 9.04 45.56 0.41 2.88 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.39 7.02 -51.93 -0.36 1.02 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.78 6.91 -51.93 -0.36 1.42 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 41 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.06 0.91 7.80 -51.93 -0.41 0.50 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.11 1.26 3.63 -51.93 -0.19 1.07 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -31.71 347.11 -7.38 -39.09 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.23 Total: 1.63 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.73 Total: -12.58 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.26 Total: -35.78 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.25 Total: -14.52 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.71 -7.38 -39.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592819421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.591 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds