Wall clock time and date at job start Tue Mar 31 2020 06:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47065 * 2 1 4 4 C 1.52996 * 109.47333 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47248 * 304.99893 * 4 3 2 6 6 O 1.42895 * 109.47390 * 64.99809 * 4 3 2 7 7 C 1.50699 * 109.47278 * 185.00012 * 4 3 2 8 8 O 1.21280 * 119.99880 * 12.77004 * 7 4 3 9 9 N 1.34779 * 120.00027 * 192.76724 * 7 4 3 10 10 C 1.46928 * 120.62962 * 183.40569 * 9 7 4 11 11 C 1.53625 * 108.53935 * 126.37491 * 10 9 7 12 12 C 1.53039 * 109.24529 * 54.85640 * 11 10 9 13 13 C 1.52998 * 109.45742 * 178.49123 * 12 11 10 14 14 C 1.50699 * 109.47384 * 295.06405 * 13 12 11 15 15 H 1.07998 * 119.99493 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00215 * 180.02562 * 14 13 12 17 17 N 1.31521 * 120.00250 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00268 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47190 * 89.99474 * 18 16 14 20 20 H 1.48497 * 109.47458 * 210.00054 * 18 16 14 21 21 H 1.48509 * 109.46792 * 329.99923 * 18 16 14 22 22 C 1.53043 * 109.53457 * 298.50949 * 12 11 10 23 23 C 1.46924 * 120.62899 * 3.69222 * 9 7 4 24 24 H 1.09003 * 109.46945 * 60.00177 * 1 2 3 25 25 H 1.08997 * 109.47193 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47077 * 300.00351 * 1 2 3 27 27 H 1.08999 * 109.46965 * 240.00383 * 2 1 3 28 28 H 1.08998 * 109.47368 * 119.99965 * 2 1 3 29 29 H 1.09001 * 109.47122 * 59.99868 * 3 2 1 30 30 H 1.09003 * 109.47094 * 299.99731 * 3 2 1 31 31 H 1.08998 * 109.46870 * 300.00538 * 5 4 3 32 32 H 1.08995 * 109.47528 * 180.02562 * 5 4 3 33 33 H 1.09008 * 109.46899 * 59.99631 * 5 4 3 34 34 H 0.96703 * 114.00480 * 60.00090 * 6 4 3 35 35 H 1.08998 * 109.58298 * 246.20257 * 10 9 7 36 36 H 1.08997 * 109.58941 * 6.62958 * 10 9 7 37 37 H 1.09004 * 109.63017 * 294.85830 * 11 10 9 38 38 H 1.09003 * 109.45653 * 174.74229 * 11 10 9 39 39 H 1.08993 * 109.44979 * 58.52376 * 12 11 10 40 40 H 1.09004 * 109.47589 * 55.06831 * 13 12 11 41 41 H 1.09001 * 109.47107 * 175.06479 * 13 12 11 42 42 H 0.96990 * 120.00272 * 180.02562 * 17 16 14 43 43 H 1.09001 * 109.49871 * 301.41447 * 22 12 11 44 44 H 1.09005 * 109.51700 * 181.33501 * 22 12 11 45 45 H 1.08996 * 109.58633 * 353.36682 * 23 9 7 46 46 H 1.09000 * 109.59130 * 113.65668 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0806 0.6151 1.1807 6 8 4.0459 0.8734 -1.2219 7 6 4.0723 2.8580 0.1232 8 8 3.3088 3.7474 0.4345 9 7 5.3701 3.1355 -0.1120 10 6 5.8908 4.4964 0.0768 11 6 7.1055 4.4289 1.0147 12 6 8.1259 3.4389 0.4482 13 6 9.3544 3.3960 1.3592 14 6 10.0428 4.7364 1.3378 15 1 9.6437 5.5387 0.7350 16 6 11.1820 4.9383 2.0876 17 7 11.7826 6.1083 2.0693 18 14 11.8728 3.5503 3.1295 19 1 12.8411 2.7624 2.3254 20 1 12.5611 4.1177 4.3166 21 1 10.7649 2.6672 3.5748 22 6 7.4987 2.0450 0.3720 23 6 6.2896 2.0842 -0.5680 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.7175 1.0492 2.1122 32 1 5.1705 0.6155 1.1805 33 1 3.7171 -0.4087 1.0911 34 1 3.7602 1.3479 -2.0146 35 1 6.1916 4.9092 -0.8861 36 1 5.1188 5.1247 0.5210 37 1 6.7870 4.0976 2.0032 38 1 7.5605 5.4165 1.0912 39 1 8.4251 3.7576 -0.5502 40 1 9.0436 3.1634 2.3777 41 1 10.0426 2.6284 1.0051 42 1 12.5842 6.2503 2.5965 43 1 7.1765 1.7361 1.3664 44 1 8.2332 1.3355 -0.0093 45 1 5.7809 1.1204 -0.5492 46 1 6.6205 2.3031 -1.5832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592819421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:56 Heat of formation + Delta-G solvation = -130.593659 kcal Electronic energy + Delta-G solvation = -23710.049748 eV Core-core repulsion = 20404.834005 eV Total energy + Delta-G solvation = -3305.215743 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.79060 -39.18423 -38.21132 -35.81693 -35.10538 -34.01334 -32.42575 -31.55753 -30.32040 -27.73015 -26.57949 -25.02679 -23.90233 -23.00786 -21.71853 -21.07238 -20.14928 -19.01207 -18.56909 -17.31057 -16.86894 -16.59321 -16.36971 -15.98122 -15.37173 -15.26390 -15.08234 -14.84378 -14.52835 -14.39740 -14.12290 -13.96818 -13.61510 -13.40516 -13.25703 -13.06435 -12.99592 -12.85884 -12.59567 -12.50843 -12.38465 -12.13039 -12.03150 -11.83867 -11.71667 -11.55370 -11.42290 -11.28049 -11.13685 -10.98855 -10.72887 -10.22975 -9.63745 -8.26306 -6.28598 1.35466 1.37696 1.43983 1.48942 1.96344 2.37454 3.09235 3.11236 3.32317 3.73342 3.85865 3.96429 4.03066 4.06432 4.20600 4.25551 4.33175 4.38960 4.57139 4.58262 4.66978 4.71715 4.79691 4.81160 4.84119 4.94008 4.97351 4.99344 5.04253 5.08293 5.13385 5.20547 5.24552 5.28587 5.32097 5.40354 5.43866 5.50646 5.59717 5.70941 5.74970 6.33049 6.36369 6.60984 6.79354 7.07876 7.35354 8.90362 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034044 B = 0.003613 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.264745 B = 7747.568530 C = 8061.123699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.124 4.124 4 C 0.135 3.865 5 C -0.148 4.148 6 O -0.539 6.539 7 C 0.482 3.518 8 O -0.583 6.583 9 N -0.593 5.593 10 C 0.114 3.886 11 C -0.110 4.110 12 C -0.069 4.069 13 C -0.006 4.006 14 C -0.519 4.519 15 H 0.035 0.965 16 C 0.000 4.000 17 N -0.955 5.955 18 Si 0.948 3.052 19 H -0.266 1.266 20 H -0.289 1.289 21 H -0.248 1.248 22 C -0.128 4.128 23 C 0.098 3.902 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.393 0.607 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.012 0.988 41 H 0.020 0.980 42 H 0.264 0.736 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.136 0.864 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.612 -16.845 -6.291 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.163 4.163 4 C 0.091 3.909 5 C -0.205 4.205 6 O -0.347 6.347 7 C 0.270 3.730 8 O -0.463 6.463 9 N -0.325 5.325 10 C -0.009 4.009 11 C -0.149 4.149 12 C -0.088 4.088 13 C -0.044 4.044 14 C -0.557 4.557 15 H 0.054 0.946 16 C -0.196 4.196 17 N -0.596 5.596 18 Si 0.772 3.228 19 H -0.191 1.191 20 H -0.215 1.215 21 H -0.171 1.171 22 C -0.166 4.166 23 C -0.023 4.023 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.243 0.757 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.106 0.894 45 H 0.153 0.847 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.589 -16.716 -5.670 26.369 hybrid contribution 0.718 1.106 0.303 1.353 sum -18.871 -15.610 -5.367 25.072 Atomic orbital electron populations 1.21781 0.95475 1.02144 1.01669 1.21524 0.95942 0.94622 1.03264 1.22006 0.92218 0.98859 1.03193 1.21250 0.94503 0.87005 0.88107 1.22016 1.02555 1.01349 0.94615 1.86502 1.75839 1.57082 1.15268 1.22162 0.81708 0.92644 0.76492 1.90664 1.56256 1.49590 1.49832 1.48299 1.08826 1.10616 1.64767 1.21650 0.95656 0.83909 0.99702 1.21807 0.94749 1.00309 0.97985 1.20925 0.94220 0.94972 0.98674 1.19581 0.94300 0.94892 0.95597 1.21494 1.09540 0.98201 1.26469 0.94628 1.26010 0.97298 0.98103 0.98181 1.70075 1.20906 1.25260 1.43356 0.85695 0.79182 0.79630 0.78341 1.19065 1.21530 1.17134 1.22042 0.97656 0.96641 1.00295 1.22403 0.89935 0.92569 0.97393 0.92841 0.91680 0.93199 0.90642 0.91011 0.91725 0.91523 0.91156 0.91109 0.88180 0.75658 0.90941 0.90803 0.93280 0.92595 0.92511 0.96923 0.96134 0.92753 0.92095 0.89399 0.84676 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 71.98 0.71 -1.11 16 2 C -0.12 -1.48 5.34 30.60 0.16 -1.31 16 3 C -0.12 -2.14 3.97 30.59 0.12 -2.02 16 4 C 0.14 2.49 0.65 -11.54 -0.01 2.48 16 5 C -0.15 -2.50 8.06 71.98 0.58 -1.92 16 6 O -0.54 -7.64 9.58 -148.98 -1.43 -9.07 16 7 C 0.48 12.85 6.67 87.66 0.58 13.43 16 8 O -0.58 -19.97 15.30 -3.03 -0.05 -20.01 16 9 N -0.59 -15.85 2.97 -818.07 -2.43 -18.28 16 10 C 0.11 3.58 6.45 86.51 0.56 4.13 16 11 C -0.11 -4.07 5.21 30.82 0.16 -3.91 16 12 C -0.07 -2.53 2.10 -10.77 -0.02 -2.55 16 13 C -0.01 -0.29 3.52 29.85 0.10 -0.18 16 14 C -0.52 -29.36 8.94 25.60 0.23 -29.13 16 15 H 0.04 2.21 7.30 -2.91 -0.02 2.19 16 16 C 0.00 0.01 5.47 84.65 0.46 0.47 16 17 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 18 Si 0.95 44.28 27.47 68.60 1.88 46.17 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 21 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 22 C -0.13 -3.47 5.28 30.67 0.16 -3.31 16 23 C 0.10 2.17 5.07 86.36 0.44 2.61 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.89 7.82 -2.39 -0.02 0.87 16 28 H 0.07 0.85 6.35 -2.39 -0.02 0.83 16 29 H 0.06 1.36 7.78 -2.39 -0.02 1.34 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.26 5.95 -2.39 -0.01 1.25 16 33 H 0.10 1.28 6.35 -2.38 -0.02 1.26 16 34 H 0.39 3.67 9.04 -74.06 -0.67 3.00 16 35 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.07 2.49 7.02 -2.39 -0.02 2.48 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.06 2.40 6.91 -2.39 -0.02 2.38 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 40 H 0.01 0.57 7.20 -2.38 -0.02 0.55 16 41 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 42 H 0.26 15.59 8.31 -92.72 -0.77 14.82 16 43 H 0.06 1.66 7.80 -2.39 -0.02 1.64 16 44 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 45 H 0.14 2.47 3.63 -2.39 -0.01 2.47 16 46 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -70.21 347.11 2.76 -67.45 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.23 Total: 15.97 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 4.25 Total: -22.33 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -2.13 Total: -78.18 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -1.47 Total: -29.08 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.17 kcal Total: -70.21 2.76 -67.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592819421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.145 kcal (2) G-P(sol) polarization free energy of solvation -70.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds