Wall clock time and date at job start Tue Mar 31 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47022 * 2 1 4 4 C 1.52995 * 109.47090 * 240.00324 * 2 1 3 5 5 C 1.53004 * 109.46959 * 120.00305 * 2 1 3 6 6 C 1.52998 * 109.47162 * 59.99836 * 5 2 1 7 7 C 1.53004 * 109.46831 * 180.02562 * 6 5 2 8 8 C 1.50700 * 109.46723 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00254 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99819 * 179.97438 * 8 7 6 11 11 C 1.47021 * 125.64744 * 359.96801 * 10 8 7 12 12 C 1.54326 * 107.27002 * 181.08547 * 11 10 8 13 13 C 1.55151 * 102.94313 * 22.19392 * 12 11 10 14 14 O 1.42901 * 111.00842 * 82.56580 * 13 12 11 15 15 C 1.50698 * 111.00641 * 206.42337 * 13 12 11 16 16 H 1.07993 * 120.00138 * 112.19363 * 15 13 12 17 17 C 1.37875 * 119.99529 * 292.19405 * 15 13 12 18 18 N 1.31514 * 120.00358 * 359.97438 * 17 15 13 19 19 Si 1.86808 * 119.99716 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47193 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47196 * 119.99989 * 19 17 15 22 22 H 1.48495 * 109.46989 * 240.00003 * 19 17 15 23 23 C 1.47421 * 125.64805 * 179.97438 * 10 8 7 24 24 H 1.09003 * 109.47045 * 300.00232 * 1 2 3 25 25 H 1.09003 * 109.47112 * 59.99734 * 1 2 3 26 26 H 1.08991 * 109.46960 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47127 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47474 * 299.99878 * 3 2 1 29 29 H 1.09010 * 109.46883 * 60.00425 * 3 2 1 30 30 H 1.09005 * 109.47013 * 299.99933 * 4 2 1 31 31 H 1.08994 * 109.47770 * 59.99872 * 4 2 1 32 32 H 1.09003 * 109.47148 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.46804 * 299.99611 * 5 2 1 34 34 H 1.08996 * 109.46879 * 180.02562 * 5 2 1 35 35 H 1.08995 * 109.47139 * 60.00203 * 6 5 2 36 36 H 1.09003 * 109.46976 * 300.00082 * 6 5 2 37 37 H 1.08995 * 109.47243 * 60.00082 * 7 6 5 38 38 H 1.08996 * 109.46877 * 299.99760 * 7 6 5 39 39 H 1.08996 * 109.88310 * 300.50411 * 11 10 8 40 40 H 1.09002 * 109.88672 * 61.51452 * 11 10 8 41 41 H 1.09000 * 110.72348 * 263.82382 * 12 11 10 42 42 H 1.09003 * 110.71705 * 140.55404 * 12 11 10 43 43 H 0.96708 * 113.99322 * 67.80350 * 14 13 12 44 44 H 0.96999 * 120.00046 * 179.97438 * 18 17 15 45 45 H 1.09002 * 110.36865 * 37.00989 * 23 10 8 46 46 H 1.09001 * 110.37117 * 274.68307 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.5300 -2.1638 1.2492 7 6 2.0395 -2.8849 2.4988 8 6 1.5376 -4.3059 2.4984 9 8 0.8414 -4.7029 1.5881 10 7 1.8633 -5.1358 3.5091 11 6 2.6969 -4.7876 4.6690 12 6 2.8184 -6.0540 5.5426 13 6 2.5161 -7.1984 4.5396 14 8 3.6814 -7.5409 3.7866 15 6 1.9601 -8.4059 5.2493 16 1 0.9344 -8.7026 5.0875 17 6 2.7609 -9.1318 6.1053 18 7 4.0101 -8.7707 6.3021 19 14 2.0714 -10.6282 6.9857 20 1 0.6516 -10.8215 6.5957 21 1 2.8563 -11.8306 6.6069 22 1 2.1585 -10.4225 8.4538 23 6 1.4427 -6.5432 3.6347 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6767 -1.7489 -1.2493 31 1 1.6768 -0.2074 -2.1392 32 1 3.1301 -0.7216 -1.2490 33 1 1.6767 -0.2075 2.1392 34 1 3.1300 -0.7209 1.2495 35 1 1.8933 -2.6776 0.3592 36 1 0.4400 -2.1637 1.2492 37 1 1.6758 -2.3710 3.3885 38 1 3.1294 -2.8849 2.4992 39 1 3.6850 -4.4721 4.3340 40 1 2.2251 -3.9862 5.2375 41 1 2.0818 -6.0405 6.3459 42 1 3.8271 -6.1498 5.9445 43 1 4.3811 -7.9540 4.3111 44 1 4.5734 -9.2812 6.9046 45 1 1.4270 -7.0232 2.6562 46 1 0.4610 -6.6053 4.1044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592838310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:11 Heat of formation + Delta-G solvation = -119.802555 kcal Electronic energy + Delta-G solvation = -22995.559994 eV Core-core repulsion = 19690.812188 eV Total energy + Delta-G solvation = -3304.747806 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.53871 -38.22318 -37.14818 -34.28138 -32.96465 -32.15467 -29.89745 -28.46441 -27.49658 -27.39425 -27.08807 -24.95285 -22.63332 -21.59324 -19.69017 -18.86620 -18.48766 -17.24624 -16.48802 -15.80372 -15.27817 -15.00329 -14.84822 -14.51748 -14.23170 -14.11867 -13.99086 -13.42904 -13.06460 -12.64500 -12.48997 -12.20110 -12.00833 -11.85957 -11.79969 -11.77453 -11.60868 -11.53389 -11.33435 -11.32428 -10.91405 -10.90852 -10.61773 -10.57462 -10.50913 -10.47292 -10.37814 -10.05381 -9.45046 -9.26496 -8.70055 -8.22241 -7.95063 -6.31962 -4.39470 3.14726 3.17112 3.26324 3.30771 3.61410 4.24691 4.58052 4.68051 4.68205 4.92537 5.03121 5.11916 5.18092 5.40072 5.45175 5.47877 5.54785 5.62612 5.63118 5.64795 5.71626 5.76462 5.78196 5.79614 5.86609 5.88894 5.97091 6.01988 6.10305 6.15099 6.21161 6.31210 6.38533 6.45010 6.47555 6.67068 6.88068 6.98665 7.28638 7.31384 7.71851 7.97963 8.19274 8.62513 8.71380 9.29660 9.46479 10.75781 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.045745 B = 0.002980 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.945836 B = 9395.250676 C = 9541.606899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.145 4.145 5 C -0.109 4.109 6 C -0.106 4.106 7 C -0.135 4.135 8 C 0.520 3.480 9 O -0.558 6.558 10 N -0.609 5.609 11 C 0.101 3.899 12 C -0.140 4.140 13 C 0.248 3.752 14 O -0.584 6.584 15 C -0.534 4.534 16 H 0.066 0.934 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.119 3.881 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.385 0.615 44 H 0.269 0.731 45 H 0.070 0.930 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.480 16.577 -5.966 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.198 4.198 4 C -0.203 4.203 5 C -0.147 4.147 6 C -0.144 4.144 7 C -0.175 4.175 8 C 0.309 3.691 9 O -0.437 6.437 10 N -0.341 5.341 11 C -0.022 4.022 12 C -0.178 4.178 13 C 0.207 3.793 14 O -0.395 6.395 15 C -0.572 4.572 16 H 0.084 0.916 17 C -0.131 4.131 18 N -0.538 5.538 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.003 4.003 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.237 0.763 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.054 16.625 -6.888 18.112 hybrid contribution 0.175 -1.008 1.222 1.594 sum -1.879 15.617 -5.665 16.719 Atomic orbital electron populations 1.21946 0.94677 1.02318 1.01275 1.20536 0.95743 0.95116 0.95608 1.21873 1.00857 0.95592 1.01461 1.21947 1.00867 1.00857 0.96591 1.21669 1.00511 0.95381 0.97098 1.21467 1.01624 0.94098 0.97191 1.21644 1.02356 0.92953 1.00563 1.20284 0.80559 0.87320 0.80920 1.90645 1.39619 1.77674 1.35806 1.48650 1.50205 1.13135 1.22115 1.22135 0.93727 0.99206 0.87124 1.23202 1.03006 0.93431 0.98194 1.19597 0.82956 0.90917 0.85812 1.86103 1.29222 1.82985 1.41142 1.21528 0.98684 1.11471 1.25534 0.91596 1.25001 0.94828 0.97591 0.95671 1.69569 1.06370 1.40209 1.37656 0.86342 0.79372 0.82089 0.79060 1.19561 1.20746 1.20809 1.22367 0.97789 0.79249 1.00898 0.92842 0.93064 0.91900 0.92781 0.92895 0.92818 0.91879 0.93059 0.92787 0.92038 0.91973 0.90978 0.91060 0.89530 0.89382 0.92442 0.92931 0.91386 0.89903 0.76274 0.92130 0.91195 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.12 37.16 0.30 -1.02 16 2 C -0.07 -0.63 0.80 -154.51 -0.12 -0.76 16 3 C -0.14 -1.10 8.47 37.16 0.31 -0.78 16 4 C -0.15 -1.35 8.12 37.16 0.30 -1.05 16 5 C -0.11 -1.06 4.27 -26.73 -0.11 -1.18 16 6 C -0.11 -1.32 3.80 -26.73 -0.10 -1.42 16 7 C -0.14 -1.84 4.89 -27.88 -0.14 -1.98 16 8 C 0.52 9.84 7.85 -10.99 -0.09 9.75 16 9 O -0.56 -12.32 16.24 5.56 0.09 -12.23 16 10 N -0.61 -12.14 3.33 -170.51 -0.57 -12.71 16 11 C 0.10 1.81 6.49 -3.06 -0.02 1.79 16 12 C -0.14 -2.96 5.64 -24.90 -0.14 -3.10 16 13 C 0.25 5.99 0.89 -89.61 -0.08 5.91 16 14 O -0.58 -15.06 13.18 -35.23 -0.46 -15.52 16 15 C -0.53 -13.84 8.25 -34.44 -0.28 -14.12 16 16 H 0.07 1.71 7.77 -52.49 -0.41 1.30 16 17 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 18 N -0.90 -22.95 10.79 55.43 0.60 -22.35 16 19 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 23 C 0.12 2.69 6.08 -2.52 -0.02 2.68 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.99 6.39 -51.93 -0.33 0.65 16 36 H 0.07 0.95 6.39 -51.93 -0.33 0.61 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 42 H 0.08 1.83 7.85 -51.93 -0.41 1.43 16 43 H 0.39 9.98 6.93 45.56 0.32 10.30 16 44 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 45 H 0.07 1.70 8.04 -51.93 -0.42 1.28 16 46 H 0.07 1.52 8.01 -51.93 -0.42 1.11 16 LS Contribution 359.77 15.07 5.42 5.42 Total: -1.00 -28.19 359.77 -7.93 -36.12 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.71 Total: 9.80 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -0.28 Total: -3.56 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.03 Total: -35.07 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.37 Total: -27.75 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.19 -7.93 -36.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.680 kcal (2) G-P(sol) polarization free energy of solvation -28.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds