Wall clock time and date at job start Tue Mar 31 2020 05:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47022 * 2 1 4 4 C 1.52995 * 109.47090 * 240.00324 * 2 1 3 5 5 C 1.53004 * 109.46959 * 120.00305 * 2 1 3 6 6 C 1.52998 * 109.47162 * 59.99836 * 5 2 1 7 7 C 1.53004 * 109.46831 * 180.02562 * 6 5 2 8 8 C 1.50700 * 109.46723 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00254 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99819 * 179.97438 * 8 7 6 11 11 C 1.47021 * 125.64744 * 359.96801 * 10 8 7 12 12 C 1.54326 * 107.27002 * 181.08547 * 11 10 8 13 13 C 1.55151 * 102.94313 * 22.19392 * 12 11 10 14 14 O 1.42901 * 111.00842 * 82.56580 * 13 12 11 15 15 C 1.50698 * 111.00641 * 206.42337 * 13 12 11 16 16 H 1.07993 * 120.00138 * 112.19363 * 15 13 12 17 17 C 1.37875 * 119.99529 * 292.19405 * 15 13 12 18 18 N 1.31514 * 120.00358 * 359.97438 * 17 15 13 19 19 Si 1.86808 * 119.99716 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47193 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47196 * 119.99989 * 19 17 15 22 22 H 1.48495 * 109.46989 * 240.00003 * 19 17 15 23 23 C 1.47421 * 125.64805 * 179.97438 * 10 8 7 24 24 H 1.09003 * 109.47045 * 300.00232 * 1 2 3 25 25 H 1.09003 * 109.47112 * 59.99734 * 1 2 3 26 26 H 1.08991 * 109.46960 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47127 * 179.97438 * 3 2 1 28 28 H 1.08994 * 109.47474 * 299.99878 * 3 2 1 29 29 H 1.09010 * 109.46883 * 60.00425 * 3 2 1 30 30 H 1.09005 * 109.47013 * 299.99933 * 4 2 1 31 31 H 1.08994 * 109.47770 * 59.99872 * 4 2 1 32 32 H 1.09003 * 109.47148 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.46804 * 299.99611 * 5 2 1 34 34 H 1.08996 * 109.46879 * 180.02562 * 5 2 1 35 35 H 1.08995 * 109.47139 * 60.00203 * 6 5 2 36 36 H 1.09003 * 109.46976 * 300.00082 * 6 5 2 37 37 H 1.08995 * 109.47243 * 60.00082 * 7 6 5 38 38 H 1.08996 * 109.46877 * 299.99760 * 7 6 5 39 39 H 1.08996 * 109.88310 * 300.50411 * 11 10 8 40 40 H 1.09002 * 109.88672 * 61.51452 * 11 10 8 41 41 H 1.09000 * 110.72348 * 263.82382 * 12 11 10 42 42 H 1.09003 * 110.71705 * 140.55404 * 12 11 10 43 43 H 0.96708 * 113.99322 * 67.80350 * 14 13 12 44 44 H 0.96999 * 120.00046 * 179.97438 * 18 17 15 45 45 H 1.09002 * 110.36865 * 37.00989 * 23 10 8 46 46 H 1.09001 * 110.37117 * 274.68307 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.5300 -2.1638 1.2492 7 6 2.0395 -2.8849 2.4988 8 6 1.5376 -4.3059 2.4984 9 8 0.8414 -4.7029 1.5881 10 7 1.8633 -5.1358 3.5091 11 6 2.6969 -4.7876 4.6690 12 6 2.8184 -6.0540 5.5426 13 6 2.5161 -7.1984 4.5396 14 8 3.6814 -7.5409 3.7866 15 6 1.9601 -8.4059 5.2493 16 1 0.9344 -8.7026 5.0875 17 6 2.7609 -9.1318 6.1053 18 7 4.0101 -8.7707 6.3021 19 14 2.0714 -10.6282 6.9857 20 1 0.6516 -10.8215 6.5957 21 1 2.8563 -11.8306 6.6069 22 1 2.1585 -10.4225 8.4538 23 6 1.4427 -6.5432 3.6347 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6767 -1.7489 -1.2493 31 1 1.6768 -0.2074 -2.1392 32 1 3.1301 -0.7216 -1.2490 33 1 1.6767 -0.2075 2.1392 34 1 3.1300 -0.7209 1.2495 35 1 1.8933 -2.6776 0.3592 36 1 0.4400 -2.1637 1.2492 37 1 1.6758 -2.3710 3.3885 38 1 3.1294 -2.8849 2.4992 39 1 3.6850 -4.4721 4.3340 40 1 2.2251 -3.9862 5.2375 41 1 2.0818 -6.0405 6.3459 42 1 3.8271 -6.1498 5.9445 43 1 4.3811 -7.9540 4.3111 44 1 4.5734 -9.2812 6.9046 45 1 1.4270 -7.0232 2.6562 46 1 0.4610 -6.6053 4.1044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592838310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:10 Heat of formation + Delta-G solvation = -136.610981 kcal Electronic energy + Delta-G solvation = -22996.288862 eV Core-core repulsion = 19690.812188 eV Total energy + Delta-G solvation = -3305.476674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.06784 -39.27952 -38.61816 -36.08716 -34.14904 -34.01605 -31.57383 -30.09908 -28.42705 -28.11693 -28.05317 -26.65372 -24.07860 -22.77535 -21.49742 -20.13964 -19.48909 -19.13808 -17.97265 -17.11092 -16.94659 -16.63318 -16.01713 -15.91578 -15.41907 -15.20441 -15.01307 -14.78318 -14.64393 -13.98025 -13.74458 -13.58649 -13.36368 -13.23549 -13.08504 -13.04847 -12.68659 -12.59757 -12.53593 -12.48287 -12.47486 -12.43202 -12.26017 -11.88368 -11.70245 -11.39085 -11.30091 -11.27953 -11.22935 -10.81933 -10.62519 -10.15060 -9.55312 -8.26255 -6.40633 1.40370 1.44869 1.54796 1.67506 2.11205 2.39819 2.98632 3.57519 3.81454 3.84446 3.95930 4.01277 4.05651 4.18404 4.27197 4.37072 4.38560 4.59234 4.60619 4.68239 4.69395 4.72329 4.82231 4.86936 4.89723 4.91593 4.98131 5.00252 5.12218 5.14166 5.17829 5.25664 5.27115 5.30626 5.38313 5.44306 5.50612 5.52550 5.59343 5.63507 5.76836 6.05033 6.61760 6.68745 7.19911 7.30785 7.44809 8.80284 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.045745 B = 0.002980 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.945836 B = 9395.250676 C = 9541.606899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C -0.137 4.137 4 C -0.146 4.146 5 C -0.102 4.102 6 C -0.101 4.101 7 C -0.124 4.124 8 C 0.512 3.488 9 O -0.598 6.598 10 N -0.614 5.614 11 C 0.107 3.893 12 C -0.131 4.131 13 C 0.233 3.767 14 O -0.596 6.596 15 C -0.561 4.561 16 H 0.055 0.945 17 C 0.035 3.965 18 N -0.909 5.909 19 Si 0.962 3.038 20 H -0.274 1.274 21 H -0.281 1.281 22 H -0.274 1.274 23 C 0.123 3.877 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.381 0.619 44 H 0.273 0.727 45 H 0.041 0.959 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.021 18.659 -5.002 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.194 4.194 4 C -0.203 4.203 5 C -0.140 4.140 6 C -0.139 4.139 7 C -0.163 4.163 8 C 0.303 3.697 9 O -0.480 6.480 10 N -0.346 5.346 11 C -0.014 4.014 12 C -0.170 4.170 13 C 0.193 3.807 14 O -0.406 6.406 15 C -0.599 4.599 16 H 0.073 0.927 17 C -0.166 4.166 18 N -0.549 5.549 19 Si 0.788 3.212 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.199 1.199 23 C 0.000 4.000 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.134 0.866 38 H 0.125 0.875 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.233 0.767 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.583 18.734 -5.915 19.709 hybrid contribution 0.019 -1.701 0.873 1.913 sum -1.565 17.032 -5.042 17.832 Atomic orbital electron populations 1.21937 0.94910 1.01369 1.01947 1.20559 0.95576 0.95961 0.95035 1.21833 1.01110 0.94415 1.02054 1.21945 1.01069 0.99931 0.97329 1.21628 1.00965 0.93365 0.97997 1.21414 1.00834 0.95700 0.95934 1.21712 1.03283 0.89093 1.02257 1.21339 0.79640 0.89024 0.79680 1.90626 1.41432 1.78774 1.37207 1.48769 1.50610 1.11947 1.23262 1.22194 0.94772 0.98378 0.86102 1.22994 1.02144 0.93953 0.97866 1.19794 0.82639 0.91626 0.86685 1.86089 1.29632 1.83103 1.41789 1.21732 0.98555 1.13007 1.26592 0.92690 1.25624 0.95168 0.99709 0.96096 1.69622 1.06824 1.40811 1.37665 0.85448 0.78424 0.79048 0.78307 1.19890 1.20654 1.19892 1.22120 0.97636 0.81250 0.99004 0.92153 0.92448 0.93630 0.92350 0.92447 0.92143 0.93717 0.92384 0.92430 0.90673 0.91098 0.92890 0.92344 0.86635 0.87528 0.90814 0.88973 0.91621 0.90967 0.76733 0.91773 0.94037 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.12 71.98 0.58 -1.85 16 2 C -0.07 -1.15 0.80 -52.18 -0.04 -1.19 16 3 C -0.14 -1.76 8.47 71.98 0.61 -1.15 16 4 C -0.15 -2.56 8.12 71.98 0.58 -1.98 16 5 C -0.10 -1.72 4.27 30.60 0.13 -1.59 16 6 C -0.10 -2.37 3.80 30.60 0.12 -2.25 16 7 C -0.12 -3.05 4.89 29.85 0.15 -2.91 16 8 C 0.51 18.92 7.85 87.66 0.69 19.61 16 9 O -0.60 -26.90 16.24 -3.04 -0.05 -26.95 16 10 N -0.61 -23.93 3.33 -811.75 -2.70 -26.63 16 11 C 0.11 3.57 6.49 86.73 0.56 4.13 16 12 C -0.13 -5.44 5.64 31.78 0.18 -5.26 16 13 C 0.23 11.38 0.89 -10.14 -0.01 11.37 16 14 O -0.60 -31.25 13.18 -148.98 -1.96 -33.21 16 15 C -0.56 -29.51 8.25 25.60 0.21 -29.30 16 16 H 0.05 2.92 7.77 -2.91 -0.02 2.90 16 17 C 0.03 1.78 5.30 84.65 0.45 2.23 16 18 N -0.91 -46.31 10.79 21.45 0.23 -46.08 16 19 Si 0.96 41.03 29.54 68.60 2.03 43.05 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 C 0.12 5.69 6.08 86.86 0.53 6.22 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 26 H 0.04 0.92 6.43 -2.39 -0.02 0.90 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.04 0.94 6.43 -2.38 -0.02 0.93 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 1.44 6.39 -2.39 -0.02 1.43 16 36 H 0.06 1.52 6.39 -2.39 -0.02 1.51 16 37 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.07 2.72 8.03 -2.39 -0.02 2.70 16 42 H 0.07 3.14 7.85 -2.39 -0.02 3.12 16 43 H 0.38 20.11 6.93 -74.05 -0.51 19.59 16 44 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 45 H 0.04 2.11 8.04 -2.39 -0.02 2.09 16 46 H 0.07 3.15 8.01 -2.39 -0.02 3.13 16 Total: -1.00 -61.64 359.77 2.71 -58.93 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: 0.42 Total: 34.81 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 4.74 Total: -3.92 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -2.47 Total: -72.71 kcal Atomic # 8 Polarization: -58.15 SS G_CDS: -2.01 Total: -60.16 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Total: -61.64 2.71 -58.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.683 kcal (2) G-P(sol) polarization free energy of solvation -61.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds