Wall clock time and date at job start Tue Mar 31 2020 06:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47147 * 2 1 4 4 C 1.53000 * 109.47147 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47123 * 180.19955 * 4 3 2 6 6 H 1.09001 * 109.47076 * 56.77562 * 5 4 3 7 7 C 1.53002 * 109.46794 * 296.77528 * 5 4 3 8 8 C 1.52998 * 109.47130 * 300.27726 * 7 5 4 9 9 C 1.50696 * 109.46805 * 176.77488 * 5 4 3 10 10 O 1.21272 * 120.00648 * 24.29080 * 9 5 4 11 11 N 1.34783 * 119.99747 * 204.28212 * 9 5 4 12 12 C 1.47022 * 125.64572 * 4.08823 * 11 9 5 13 13 C 1.54339 * 107.26354 * 178.84890 * 12 11 9 14 14 C 1.55157 * 103.01791 * 338.13526 * 13 12 11 15 15 O 1.42893 * 111.00789 * 277.23434 * 14 13 12 16 16 C 1.50709 * 111.03404 * 153.39660 * 14 13 12 17 17 H 1.07997 * 119.99685 * 244.36636 * 16 14 13 18 18 C 1.37873 * 119.99687 * 64.36525 * 16 14 13 19 19 N 1.31512 * 120.00505 * 0.12050 * 18 16 14 20 20 Si 1.86799 * 119.99935 * 180.11968 * 18 16 14 21 21 H 1.48507 * 109.47027 * 94.97004 * 20 18 16 22 22 H 1.48501 * 109.47479 * 214.97262 * 20 18 16 23 23 H 1.48506 * 109.47299 * 334.97734 * 20 18 16 24 24 C 1.47422 * 125.64934 * 184.38931 * 11 9 5 25 25 H 1.09002 * 109.47278 * 59.99878 * 1 2 3 26 26 H 1.08997 * 109.47143 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47484 * 300.00057 * 1 2 3 28 28 H 1.09004 * 109.47295 * 240.00431 * 2 1 3 29 29 H 1.09002 * 109.47278 * 120.00122 * 2 1 3 30 30 H 1.09004 * 109.47089 * 60.00387 * 3 2 1 31 31 H 1.09001 * 109.47575 * 299.99923 * 3 2 1 32 32 H 1.08997 * 109.47149 * 300.19863 * 4 3 2 33 33 H 1.08998 * 109.46916 * 60.20143 * 4 3 2 34 34 H 1.08996 * 109.46970 * 60.28045 * 7 5 4 35 35 H 1.09000 * 109.46629 * 180.27610 * 7 5 4 36 36 H 1.09004 * 109.47320 * 304.52184 * 8 7 5 37 37 H 1.08994 * 109.47269 * 64.52752 * 8 7 5 38 38 H 1.09001 * 109.46907 * 184.52421 * 8 7 5 39 39 H 1.09006 * 109.88165 * 298.38882 * 12 11 9 40 40 H 1.08997 * 109.88501 * 59.55655 * 12 11 9 41 41 H 1.09004 * 110.84994 * 219.67228 * 13 12 11 42 42 H 1.09003 * 110.51931 * 96.45142 * 13 12 11 43 43 H 0.96706 * 114.00267 * 292.19951 * 15 14 13 44 44 H 0.96999 * 120.00254 * 179.97438 * 19 18 16 45 45 H 1.09000 * 110.36632 * 322.93375 * 24 11 9 46 46 H 1.08998 * 110.36519 * 85.14598 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0044 6 1 3.6706 3.4121 0.8662 7 6 3.6368 3.5871 -1.2808 8 6 4.2057 2.8431 -2.4906 9 6 5.5849 2.8854 0.0837 10 8 6.2127 1.9219 -0.3013 11 7 6.2331 3.9567 0.5824 12 6 5.5979 5.1504 1.1595 13 6 6.7291 6.0929 1.6221 14 6 7.9375 5.1338 1.7872 15 8 7.9005 4.4767 3.0555 16 6 9.2403 5.8680 1.6003 17 1 9.8878 5.6169 0.7732 18 6 9.6055 6.8602 2.4852 19 7 8.8182 7.1643 3.4938 20 14 11.2187 7.7726 2.2517 21 1 10.9730 9.0271 1.4958 22 1 11.7990 8.0999 3.5789 23 1 12.1667 6.9162 1.4945 24 6 7.6964 4.1284 0.6337 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9564 -0.8900 32 1 3.9337 0.9254 0.8873 33 1 3.9329 0.9319 -0.8926 34 1 2.5482 3.5911 -1.3356 35 1 4.0043 4.6133 -1.2794 36 1 5.2890 2.7691 -2.3951 37 1 3.7758 1.8426 -2.5370 38 1 3.9576 3.3877 -3.4016 39 1 4.9853 5.6454 0.4059 40 1 4.9821 4.8666 2.0129 41 1 6.4777 6.5635 2.5727 42 1 6.9350 6.8452 0.8607 43 1 8.0464 5.0660 3.8083 44 1 9.0753 7.8621 4.1165 45 1 8.1825 3.1774 0.8516 46 1 8.0640 4.5343 -0.3087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:11 Heat of formation + Delta-G solvation = -120.348086 kcal Electronic energy + Delta-G solvation = -23548.849922 eV Core-core repulsion = 20244.078460 eV Total energy + Delta-G solvation = -3304.771462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.86469 -37.67067 -36.26276 -34.31078 -33.95792 -32.19159 -30.08134 -29.83287 -28.43001 -26.97947 -24.98760 -23.54693 -22.68642 -21.55427 -20.35176 -19.56159 -18.21441 -17.18272 -16.63919 -15.93972 -15.43204 -14.99860 -14.95721 -14.42862 -14.28776 -14.01609 -13.66144 -13.26477 -13.01525 -12.88632 -12.66387 -12.28091 -12.22413 -11.93716 -11.76073 -11.51666 -11.42118 -11.36075 -11.30366 -11.01883 -10.92746 -10.89964 -10.77223 -10.62447 -10.50148 -10.46924 -10.32627 -10.03572 -9.40671 -9.13169 -8.70033 -8.22198 -7.92862 -6.30864 -4.38981 3.14771 3.17833 3.26155 3.30453 3.60661 4.25049 4.66858 4.74149 4.85320 4.96422 5.02667 5.05314 5.07967 5.34682 5.37546 5.47060 5.57025 5.61781 5.66138 5.71263 5.73331 5.77995 5.82770 5.89927 5.91598 5.96669 6.02702 6.03316 6.13944 6.18600 6.30073 6.32180 6.35991 6.45652 6.52610 6.67971 6.89556 7.00570 7.30701 7.33323 7.71818 7.98928 8.20720 8.63284 8.73094 9.29892 9.42438 10.76451 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.034763 B = 0.003561 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.256930 B = 7860.641186 C = 8048.800694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.103 4.103 5 C -0.104 4.104 6 H 0.087 0.913 7 C -0.111 4.111 8 C -0.156 4.156 9 C 0.529 3.471 10 O -0.555 6.555 11 N -0.607 5.607 12 C 0.100 3.900 13 C -0.137 4.137 14 C 0.248 3.752 15 O -0.584 6.584 16 C -0.535 4.535 17 H 0.065 0.935 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.119 3.881 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.383 0.617 44 H 0.268 0.732 45 H 0.069 0.931 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.219 -5.299 -6.072 16.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.141 4.141 5 C -0.125 4.125 6 H 0.105 0.895 7 C -0.149 4.149 8 C -0.213 4.213 9 C 0.318 3.682 10 O -0.434 6.434 11 N -0.339 5.339 12 C -0.023 4.023 13 C -0.176 4.176 14 C 0.208 3.792 15 O -0.393 6.393 16 C -0.574 4.574 17 H 0.083 0.917 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.730 3.270 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.196 1.196 24 C -0.003 4.003 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.234 0.766 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.047 -6.271 -6.522 16.709 hybrid contribution 0.914 1.279 0.409 1.625 sum -13.133 -4.991 -6.114 15.322 Atomic orbital electron populations 1.21777 0.96118 1.01352 1.01684 1.21526 0.95512 0.97134 1.02113 1.21679 0.95374 0.96651 1.02052 1.21462 0.94543 0.94619 1.03435 1.21330 0.92530 0.98699 0.99974 0.89518 1.21445 1.00846 0.99238 0.93336 1.21855 1.02205 1.00267 0.96969 1.20141 0.89502 0.81410 0.77187 1.90634 1.69116 1.33721 1.49903 1.48629 1.08589 1.17683 1.58989 1.22167 0.97184 0.86451 0.96470 1.23179 0.95063 0.97519 1.01818 1.19584 0.92121 0.86444 0.81079 1.86119 1.95149 1.40861 1.17144 1.21483 1.04748 1.18470 1.12657 0.91689 1.24996 0.97338 0.96105 0.94621 1.69655 1.37083 1.31940 1.14904 0.86397 0.83098 0.79757 0.77709 1.20530 1.20974 1.19646 1.22348 0.78744 1.00463 0.98734 0.92872 0.93002 0.92820 0.92055 0.92045 0.92086 0.91712 0.91815 0.90557 0.90932 0.91645 0.91980 0.92321 0.93049 0.92926 0.92526 0.89719 0.91479 0.76622 0.92168 0.91209 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.13 -1.14 5.93 -26.73 -0.16 -1.30 16 3 C -0.12 -1.19 4.93 -26.73 -0.13 -1.32 16 4 C -0.10 -1.32 3.90 -26.73 -0.10 -1.42 16 5 C -0.10 -1.46 2.05 -91.77 -0.19 -1.65 16 6 H 0.09 1.15 7.28 -51.93 -0.38 0.77 16 7 C -0.11 -1.33 5.41 -26.73 -0.14 -1.47 16 8 C -0.16 -1.94 9.23 37.16 0.34 -1.60 16 9 C 0.53 9.96 5.95 -10.98 -0.07 9.89 16 10 O -0.55 -12.11 15.68 5.56 0.09 -12.02 16 11 N -0.61 -12.07 3.33 -170.52 -0.57 -12.64 16 12 C 0.10 1.81 6.17 -3.06 -0.02 1.79 16 13 C -0.14 -2.92 5.50 -24.89 -0.14 -3.06 16 14 C 0.25 5.99 0.89 -89.62 -0.08 5.91 16 15 O -0.58 -14.98 13.19 -35.23 -0.46 -15.45 16 16 C -0.54 -13.86 8.26 -34.44 -0.28 -14.15 16 17 H 0.06 1.68 7.78 -52.49 -0.41 1.27 16 18 C 0.07 1.83 5.27 -17.82 -0.09 1.73 16 19 N -0.90 -22.86 10.74 55.43 0.60 -22.27 16 20 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 C 0.12 2.68 6.10 -2.53 -0.02 2.67 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.59 6.53 -51.93 -0.34 0.25 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.04 6.20 -51.93 -0.32 0.72 16 34 H 0.07 0.71 6.53 -51.93 -0.34 0.37 16 35 H 0.06 0.81 7.41 -51.93 -0.38 0.42 16 36 H 0.06 0.96 6.60 -51.93 -0.34 0.61 16 37 H 0.06 0.69 6.60 -51.93 -0.34 0.34 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.81 7.41 -51.93 -0.38 0.42 16 40 H 0.06 0.97 7.90 -51.93 -0.41 0.56 16 41 H 0.08 1.89 7.68 -51.93 -0.40 1.49 16 42 H 0.07 1.43 8.03 -51.93 -0.42 1.02 16 43 H 0.38 9.85 7.20 45.56 0.33 10.18 16 44 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 45 H 0.07 1.69 8.00 -51.93 -0.42 1.28 16 46 H 0.07 1.51 8.03 -51.93 -0.42 1.09 16 LS Contribution 355.93 15.07 5.36 5.36 Total: -1.00 -27.90 355.93 -8.21 -36.10 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -7.49 Total: 10.67 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.71 Total: -4.79 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.03 Total: -34.91 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.38 Total: -27.47 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.90 -8.21 -36.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.245 kcal (2) G-P(sol) polarization free energy of solvation -27.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds