Wall clock time and date at job start Tue Mar 31 2020 06:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47323 * 2 1 4 4 C 1.52990 * 109.47434 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47493 * 184.53586 * 4 3 2 6 6 H 1.09004 * 109.46501 * 53.27940 * 5 4 3 7 7 C 1.52993 * 109.47332 * 293.28148 * 5 4 3 8 8 C 1.53008 * 109.47084 * 302.59209 * 7 5 4 9 9 C 1.50701 * 109.47333 * 173.27448 * 5 4 3 10 10 O 1.21281 * 119.99979 * 20.74164 * 9 5 4 11 11 N 1.34773 * 119.99978 * 200.74007 * 9 5 4 12 12 C 1.47025 * 125.64790 * 355.52326 * 11 9 5 13 13 C 1.54370 * 107.28752 * 181.05865 * 12 11 9 14 14 C 1.55158 * 102.92014 * 22.13771 * 13 12 11 15 15 O 1.42900 * 111.00051 * 82.64160 * 14 13 12 16 16 C 1.50701 * 111.00351 * 206.45343 * 14 13 12 17 17 H 1.07995 * 119.99852 * 115.42643 * 16 14 13 18 18 C 1.37879 * 120.00070 * 295.14316 * 16 14 13 19 19 N 1.31517 * 119.99787 * 0.27718 * 18 16 14 20 20 Si 1.86803 * 120.00212 * 180.27815 * 18 16 14 21 21 H 1.48497 * 109.47012 * 59.99750 * 20 18 16 22 22 H 1.48494 * 109.47366 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46882 * 300.00087 * 20 18 16 24 24 C 1.47418 * 125.64992 * 175.48549 * 11 9 5 25 25 H 1.09006 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47502 * 299.99861 * 1 2 3 27 27 H 1.09004 * 109.46909 * 60.00334 * 1 2 3 28 28 H 1.09000 * 109.47090 * 239.99863 * 2 1 3 29 29 H 1.09004 * 109.46909 * 119.99666 * 2 1 3 30 30 H 1.09009 * 109.47010 * 59.99735 * 3 2 1 31 31 H 1.09003 * 109.46921 * 300.00242 * 3 2 1 32 32 H 1.09001 * 109.47152 * 64.53879 * 4 3 2 33 33 H 1.08998 * 109.47459 * 304.54109 * 4 3 2 34 34 H 1.09000 * 109.47628 * 62.59033 * 7 5 4 35 35 H 1.09002 * 109.47443 * 182.59377 * 7 5 4 36 36 H 1.09004 * 109.46625 * 305.91569 * 8 7 5 37 37 H 1.08997 * 109.46689 * 65.90871 * 8 7 5 38 38 H 1.08993 * 109.47220 * 185.91411 * 8 7 5 39 39 H 1.08993 * 109.88546 * 300.44058 * 12 11 9 40 40 H 1.09004 * 109.88111 * 61.60886 * 12 11 9 41 41 H 1.09001 * 110.70485 * 263.79790 * 13 12 11 42 42 H 1.09002 * 110.75678 * 140.50824 * 13 12 11 43 43 H 0.96702 * 114.00017 * 64.58277 * 15 14 13 44 44 H 0.97002 * 119.99902 * 180.02562 * 19 18 16 45 45 H 1.09000 * 110.36882 * 37.06720 * 24 11 9 46 46 H 1.09000 * 110.46063 * 274.79552 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0799 2.8805 0.1147 6 1 3.6213 3.3611 0.9790 7 6 3.7130 3.6539 -1.1533 8 6 4.3028 2.9429 -2.3730 9 6 5.5777 2.8706 0.2815 10 8 6.2194 1.8998 -0.0601 11 7 6.2039 3.9405 0.8101 12 6 5.5645 5.2122 1.1785 13 6 6.6720 6.1441 1.7149 14 6 7.9609 5.5453 1.0923 15 8 8.1463 6.0094 -0.2465 16 6 9.1663 5.8578 1.9411 17 1 9.7109 5.0581 2.4209 18 6 9.5775 7.1642 2.1003 19 7 8.9144 8.1381 1.5159 20 14 11.0762 7.5509 3.1461 21 1 12.2658 6.8671 2.5782 22 1 11.3065 9.0179 3.1579 23 1 10.8474 7.0751 4.5341 24 6 7.6434 4.0294 1.1155 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9336 1.0006 -0.9270 33 1 3.9329 0.8600 0.8474 34 1 2.6283 3.7006 -1.2494 35 1 4.1162 4.6648 -1.0919 36 1 5.3742 2.8027 -2.2289 37 1 3.8225 1.9721 -2.4950 38 1 4.1321 3.5474 -3.2637 39 1 5.0969 5.6597 0.3015 40 1 4.8167 5.0405 1.9528 41 1 6.7153 6.1046 2.8034 42 1 6.5166 7.1667 1.3709 43 1 8.2992 6.9618 -0.3150 44 1 9.2038 9.0572 1.6276 45 1 8.2253 3.5083 0.3554 46 1 7.8500 3.6135 2.1016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:13 Heat of formation + Delta-G solvation = -119.966202 kcal Electronic energy + Delta-G solvation = -23587.455332 eV Core-core repulsion = 20282.700430 eV Total energy + Delta-G solvation = -3304.754902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.86528 -37.65335 -36.26229 -34.32184 -33.96353 -32.18637 -30.04113 -29.83269 -28.43009 -26.97453 -24.98145 -23.52914 -22.69259 -21.53094 -20.33229 -19.58628 -18.25776 -17.23587 -16.48072 -15.94942 -15.36676 -15.15951 -14.96008 -14.45359 -14.26432 -13.88064 -13.60854 -13.28529 -13.18909 -12.79591 -12.66732 -12.26752 -12.13733 -12.04890 -11.68532 -11.45809 -11.43297 -11.35040 -11.29406 -11.01132 -10.93432 -10.86826 -10.77741 -10.63845 -10.50764 -10.45892 -10.32430 -10.01327 -9.41707 -9.13860 -8.68416 -8.21989 -7.93066 -6.30141 -4.37893 3.14688 3.20791 3.25709 3.28948 3.60444 4.25649 4.66460 4.74978 4.84333 4.96993 5.03257 5.06636 5.09113 5.36553 5.38994 5.47115 5.56879 5.61290 5.66225 5.70873 5.74391 5.76905 5.86302 5.90887 5.92699 5.96927 6.01527 6.04634 6.14354 6.23134 6.30083 6.35618 6.38960 6.45439 6.55016 6.68192 6.89172 7.00134 7.29478 7.32624 7.72316 8.00451 8.20522 8.63588 8.72855 9.30579 9.42553 10.77415 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.036148 B = 0.003537 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.412457 B = 7915.522511 C = 8007.282984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.103 4.103 5 C -0.103 4.103 6 H 0.086 0.914 7 C -0.113 4.113 8 C -0.155 4.155 9 C 0.529 3.471 10 O -0.555 6.555 11 N -0.607 5.607 12 C 0.100 3.900 13 C -0.138 4.138 14 C 0.249 3.751 15 O -0.583 6.583 16 C -0.536 4.536 17 H 0.064 0.936 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.903 3.097 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.119 3.881 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.382 0.618 44 H 0.269 0.731 45 H 0.069 0.931 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.522 -7.187 -2.046 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.140 4.140 5 C -0.124 4.124 6 H 0.105 0.895 7 C -0.150 4.150 8 C -0.212 4.212 9 C 0.317 3.683 10 O -0.434 6.434 11 N -0.339 5.339 12 C -0.023 4.023 13 C -0.177 4.177 14 C 0.208 3.792 15 O -0.392 6.392 16 C -0.574 4.574 17 H 0.082 0.918 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.003 4.003 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.233 0.767 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.309 -8.193 -2.409 16.663 hybrid contribution 0.841 1.087 0.847 1.615 sum -13.468 -7.106 -1.562 15.307 Atomic orbital electron populations 1.21778 0.96119 1.01351 1.01697 1.21527 0.95516 0.97139 1.02093 1.21663 0.95394 0.96610 1.02027 1.21470 0.94469 0.94591 1.03500 1.21341 0.92663 0.98450 0.99993 0.89539 1.21464 1.00896 0.99270 0.93405 1.21848 1.02159 1.00144 0.97093 1.20164 0.89547 0.81748 0.76820 1.90639 1.67901 1.34132 1.50733 1.48615 1.10481 1.13741 1.61060 1.22194 0.96899 0.84721 0.98523 1.23200 0.95186 0.98757 1.00519 1.19581 0.91493 0.86992 0.81101 1.86127 1.94709 1.29825 1.28535 1.21435 1.12577 0.92981 1.30411 0.91785 1.24987 0.96855 0.95979 0.95161 1.69641 1.39879 1.00193 1.43911 0.86467 0.82723 0.77171 0.80573 1.19993 1.21115 1.20062 1.22347 0.79426 0.98705 0.99837 0.93004 0.92838 0.92842 0.92040 0.92082 0.92131 0.91768 0.90570 0.91811 0.91112 0.91310 0.91933 0.92466 0.92938 0.92329 0.93014 0.91423 0.89744 0.76702 0.92118 0.91210 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.13 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.12 -1.16 4.89 -26.74 -0.13 -1.29 16 4 C -0.10 -1.29 3.81 -26.73 -0.10 -1.39 16 5 C -0.10 -1.44 1.88 -91.77 -0.17 -1.62 16 6 H 0.09 1.10 7.51 -51.93 -0.39 0.71 16 7 C -0.11 -1.43 5.40 -26.73 -0.14 -1.58 16 8 C -0.16 -2.08 9.20 37.16 0.34 -1.74 16 9 C 0.53 9.94 5.98 -10.99 -0.07 9.88 16 10 O -0.55 -12.14 15.90 5.56 0.09 -12.05 16 11 N -0.61 -12.04 3.33 -170.50 -0.57 -12.61 16 12 C 0.10 1.79 6.19 -3.04 -0.02 1.77 16 13 C -0.14 -2.93 5.52 -24.87 -0.14 -3.06 16 14 C 0.25 5.99 0.88 -89.62 -0.08 5.91 16 15 O -0.58 -14.88 13.17 -35.23 -0.46 -15.35 16 16 C -0.54 -13.89 8.25 -34.44 -0.28 -14.18 16 17 H 0.06 1.66 7.78 -52.49 -0.41 1.25 16 18 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 19 N -0.90 -22.88 10.76 55.43 0.60 -22.29 16 20 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 22 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 C 0.12 2.68 6.10 -2.54 -0.02 2.66 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.06 0.59 6.90 -51.93 -0.36 0.23 16 32 H 0.08 1.03 6.11 -51.93 -0.32 0.71 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.73 6.85 -51.93 -0.36 0.37 16 35 H 0.07 0.94 6.47 -51.93 -0.34 0.61 16 36 H 0.06 1.05 6.74 -51.93 -0.35 0.70 16 37 H 0.06 0.69 6.57 -51.93 -0.34 0.35 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 1.00 6.60 -51.93 -0.34 0.65 16 40 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 41 H 0.07 1.44 8.03 -51.93 -0.42 1.03 16 42 H 0.08 1.87 7.69 -51.93 -0.40 1.47 16 43 H 0.38 9.77 7.24 45.56 0.33 10.10 16 44 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 45 H 0.07 1.69 8.00 -51.93 -0.42 1.28 16 46 H 0.07 1.52 8.02 -51.93 -0.42 1.10 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -27.88 355.06 -8.15 -36.03 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -7.44 Total: 10.81 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.69 Total: -4.96 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.03 Total: -34.90 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.38 Total: -27.40 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.88 -8.15 -36.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.931 kcal (2) G-P(sol) polarization free energy of solvation -27.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds