Wall clock time and date at job start Tue Mar 31 2020 06:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46606 * 2 1 4 4 C 1.52998 * 109.46898 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47425 * 179.97438 * 4 3 2 6 6 H 1.09006 * 109.46982 * 305.00132 * 5 4 3 7 7 C 1.52999 * 109.47271 * 64.99972 * 5 4 3 8 8 C 1.53000 * 109.47599 * 185.52848 * 7 5 4 9 9 C 1.50693 * 109.47467 * 185.00192 * 5 4 3 10 10 O 1.21282 * 119.99885 * 275.12291 * 9 5 4 11 11 N 1.34774 * 120.00444 * 95.12775 * 9 5 4 12 12 C 1.47028 * 125.64492 * 355.02489 * 11 9 5 13 13 C 1.54320 * 107.27242 * 181.02632 * 12 11 9 14 14 C 1.55163 * 102.94274 * 22.19576 * 13 12 11 15 15 O 1.42896 * 111.00457 * 82.56960 * 14 13 12 16 16 C 1.50697 * 111.00576 * 206.38920 * 14 13 12 17 17 H 1.07999 * 120.00306 * 118.54455 * 16 14 13 18 18 C 1.37881 * 119.99860 * 298.54570 * 16 14 13 19 19 N 1.31516 * 119.99890 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 120.00131 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47266 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47278 * 119.99812 * 20 18 16 23 23 H 1.48507 * 109.47204 * 239.99761 * 20 18 16 24 24 C 1.47428 * 125.65511 * 174.72643 * 11 9 5 25 25 H 1.09002 * 109.46900 * 179.97438 * 1 2 3 26 26 H 1.08989 * 109.47633 * 300.00365 * 1 2 3 27 27 H 1.09003 * 109.46902 * 60.00385 * 1 2 3 28 28 H 1.09003 * 109.46902 * 119.99615 * 2 1 3 29 29 H 1.08997 * 109.47524 * 240.00267 * 2 1 3 30 30 H 1.09003 * 109.47175 * 299.99447 * 3 2 1 31 31 H 1.09004 * 109.47350 * 60.00002 * 3 2 1 32 32 H 1.08999 * 109.47577 * 300.00058 * 4 3 2 33 33 H 1.08996 * 109.47401 * 60.00001 * 4 3 2 34 34 H 1.09007 * 109.47001 * 305.52702 * 7 5 4 35 35 H 1.09001 * 109.47019 * 65.52487 * 7 5 4 36 36 H 1.08999 * 109.46704 * 304.84267 * 8 7 5 37 37 H 1.09000 * 109.46796 * 64.83540 * 8 7 5 38 38 H 1.08997 * 109.47535 * 184.83755 * 8 7 5 39 39 H 1.08997 * 109.88738 * 300.44344 * 12 11 9 40 40 H 1.09001 * 109.87838 * 61.61299 * 12 11 9 41 41 H 1.08996 * 110.72308 * 140.55873 * 13 12 11 42 42 H 1.08999 * 110.72148 * 263.65586 * 13 12 11 43 43 H 0.96703 * 113.99396 * 61.45847 * 15 14 13 44 44 H 0.97000 * 119.99851 * 179.97438 * 19 18 16 45 45 H 1.09008 * 110.36389 * 274.74511 * 24 11 9 46 46 H 1.08997 * 110.36184 * 37.05794 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4237 -0.8424 7 6 3.6746 3.5700 1.3067 8 6 4.0628 5.0488 1.2494 9 6 5.5818 2.8869 -0.1232 10 8 6.2716 2.7641 0.8667 11 7 6.1585 3.0251 -1.3335 12 6 5.4485 3.0789 -2.6199 13 6 6.5152 3.2167 -3.7265 14 6 7.7954 2.6640 -3.0460 15 8 7.8348 1.2370 -3.1111 16 6 9.0347 3.2643 -3.6582 17 1 9.7063 3.8529 -3.0508 18 6 9.3113 3.0620 -4.9937 19 7 8.4937 2.3448 -5.7332 20 14 10.8478 3.8055 -5.7525 21 1 11.5953 4.5619 -4.7161 22 1 11.7079 2.7215 -6.2916 23 1 10.4614 4.7245 -6.8531 24 6 7.6053 3.1536 -1.5863 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8898 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.9329 0.9290 0.8908 33 1 3.9337 0.9287 -0.8891 34 1 2.5967 3.4824 1.4437 35 1 4.1870 3.0919 2.1416 36 1 5.1262 5.1368 1.0268 37 1 3.4860 5.5458 0.4694 38 1 3.8529 5.5172 2.2109 39 1 4.8780 2.1619 -2.7671 40 1 4.7811 3.9404 -2.6391 41 1 6.2497 2.6144 -4.5953 42 1 6.6456 4.2614 -4.0086 43 1 7.8547 0.8849 -4.0116 44 1 8.6881 2.2028 -6.6729 45 1 7.9164 4.1938 -1.4890 46 1 8.1680 2.5226 -0.8985 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592839018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:16 Heat of formation + Delta-G solvation = -122.139777 kcal Electronic energy + Delta-G solvation = -23603.356516 eV Core-core repulsion = 20298.507360 eV Total energy + Delta-G solvation = -3304.849155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.80736 -37.59644 -36.24981 -34.25917 -33.92955 -32.23075 -30.65561 -29.71837 -28.38990 -26.83872 -25.02007 -22.89302 -22.73740 -21.56002 -20.70750 -19.65392 -18.35821 -17.25515 -16.78467 -15.60719 -15.18894 -15.03429 -14.94806 -14.50004 -14.11637 -13.87387 -13.73126 -13.56006 -13.07418 -12.92900 -12.67484 -12.28233 -12.16123 -11.91766 -11.73952 -11.58924 -11.38426 -11.31770 -11.25333 -11.17665 -11.00298 -10.90786 -10.66304 -10.63253 -10.54337 -10.45814 -10.34010 -10.02045 -9.40262 -9.15159 -8.69274 -8.22019 -7.93893 -6.29533 -4.37344 3.12499 3.17910 3.27145 3.31676 3.60921 4.26127 4.66958 4.71569 4.85943 4.95508 4.99210 5.08719 5.17908 5.32570 5.36001 5.50702 5.56657 5.58017 5.65643 5.68854 5.72375 5.77896 5.86067 5.89328 5.92068 5.96028 6.02058 6.04924 6.11788 6.23104 6.26377 6.34513 6.35962 6.39857 6.45434 6.67880 6.89521 6.99892 7.29178 7.33985 7.72441 8.01978 8.20027 8.65042 8.72679 9.30023 9.38970 10.77846 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.004097 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.911817 B = 6832.553572 C = 7551.426892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.118 4.118 4 C -0.108 4.108 5 C -0.103 4.103 6 H 0.086 0.914 7 C -0.108 4.108 8 C -0.153 4.153 9 C 0.529 3.471 10 O -0.556 6.556 11 N -0.607 5.607 12 C 0.100 3.900 13 C -0.136 4.136 14 C 0.248 3.752 15 O -0.582 6.582 16 C -0.534 4.534 17 H 0.065 0.935 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.902 3.098 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.119 3.881 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.380 0.620 44 H 0.267 0.733 45 H 0.070 0.930 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.222 0.360 6.748 15.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.155 4.155 4 C -0.146 4.146 5 C -0.124 4.124 6 H 0.104 0.896 7 C -0.146 4.146 8 C -0.211 4.211 9 C 0.318 3.682 10 O -0.435 6.435 11 N -0.339 5.339 12 C -0.023 4.023 13 C -0.175 4.175 14 C 0.208 3.792 15 O -0.390 6.390 16 C -0.573 4.573 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.729 3.271 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.003 4.003 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.229 0.771 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.924 0.290 7.810 15.967 hybrid contribution 0.788 0.388 -1.351 1.611 sum -13.136 0.678 6.459 14.654 Atomic orbital electron populations 1.21771 0.96052 1.01412 1.01671 1.21541 0.95610 0.97041 1.02220 1.21665 0.94861 0.96785 1.02187 1.21489 0.95468 0.94522 1.03103 1.21364 0.92572 0.98264 1.00224 0.89608 1.21467 1.00799 0.95661 0.96667 1.21789 1.02016 0.95978 1.01274 1.20157 0.89962 0.76214 0.81911 1.90635 1.65165 1.51070 1.36598 1.48650 1.09119 1.70498 1.05665 1.22170 0.96230 0.99601 0.84305 1.23172 0.95552 1.02251 0.96488 1.19641 0.91964 0.79482 0.88162 1.86145 1.97165 1.21954 1.33752 1.21492 1.07936 1.33002 0.94829 0.91719 1.24987 0.96799 0.94360 0.96851 1.69727 1.36713 1.39313 1.07689 0.86376 0.82634 0.78983 0.79068 1.19582 1.20774 1.20841 1.22398 0.79450 1.00079 0.98376 0.92950 0.92891 0.92786 0.92042 0.91891 0.91883 0.91645 0.91243 0.91375 0.91283 0.90778 0.92462 0.93024 0.92745 0.92466 0.93015 0.89582 0.91425 0.77051 0.92314 0.91183 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.84 16 2 C -0.13 -1.17 5.93 -26.73 -0.16 -1.33 16 3 C -0.12 -1.16 4.98 -26.73 -0.13 -1.30 16 4 C -0.11 -1.37 4.66 -26.73 -0.12 -1.50 16 5 C -0.10 -1.45 1.82 -91.77 -0.17 -1.61 16 6 H 0.09 1.11 6.96 -51.93 -0.36 0.75 16 7 C -0.11 -1.36 5.04 -26.73 -0.13 -1.49 16 8 C -0.15 -1.91 9.81 37.16 0.36 -1.55 16 9 C 0.53 10.01 5.81 -10.99 -0.06 9.94 16 10 O -0.56 -12.30 16.27 5.56 0.09 -12.21 16 11 N -0.61 -12.09 3.33 -170.38 -0.57 -12.65 16 12 C 0.10 1.80 6.15 -3.06 -0.02 1.78 16 13 C -0.14 -2.89 5.37 -24.90 -0.13 -3.02 16 14 C 0.25 5.96 0.87 -89.50 -0.08 5.88 16 15 O -0.58 -14.79 13.17 -35.23 -0.46 -15.25 16 16 C -0.53 -13.87 8.27 -34.44 -0.28 -14.16 16 17 H 0.06 1.69 7.79 -52.49 -0.41 1.28 16 18 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 19 N -0.90 -22.80 10.76 55.43 0.60 -22.21 16 20 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 C 0.12 2.68 6.12 -2.41 -0.01 2.67 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.39 8.14 -51.94 -0.42 -0.03 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.60 6.45 -51.93 -0.34 0.26 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.70 6.32 -51.93 -0.33 0.37 16 35 H 0.07 1.04 7.66 -51.93 -0.40 0.64 16 36 H 0.06 0.86 7.16 -51.93 -0.37 0.49 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.80 7.73 -51.93 -0.40 0.40 16 41 H 0.09 1.91 7.55 -51.93 -0.39 1.52 16 42 H 0.07 1.45 8.04 -51.93 -0.42 1.04 16 43 H 0.38 9.58 7.56 45.56 0.34 9.93 16 44 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 45 H 0.07 1.54 8.04 -51.92 -0.42 1.12 16 46 H 0.07 1.69 7.99 -51.93 -0.41 1.27 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -28.10 361.53 -8.28 -36.37 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -7.69 Total: 10.20 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -0.67 Total: -4.78 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.03 Total: -34.86 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.37 Total: -27.46 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.10 -8.28 -36.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.765 kcal (2) G-P(sol) polarization free energy of solvation -28.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds