Wall clock time and date at job start Tue Mar 31 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47288 * 2 1 4 4 C 1.52997 * 109.47132 * 174.98222 * 3 2 1 5 5 C 1.53000 * 109.47459 * 185.56860 * 4 3 2 6 6 C 1.53007 * 109.47005 * 64.99592 * 5 4 3 7 7 C 1.52996 * 109.46942 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47470 * 65.56607 * 4 3 2 9 9 O 1.21288 * 119.99866 * 35.00653 * 8 4 3 10 10 N 1.34774 * 120.00345 * 215.01214 * 8 4 3 11 11 C 1.47018 * 125.64835 * 355.00610 * 10 8 4 12 12 C 1.54326 * 107.27573 * 181.02491 * 11 10 8 13 13 C 1.55166 * 102.93832 * 22.19644 * 12 11 10 14 14 O 1.42902 * 111.00319 * 82.57219 * 13 12 11 15 15 C 1.50697 * 111.00327 * 206.38480 * 13 12 11 16 16 H 1.07999 * 119.99810 * 24.80800 * 15 13 12 17 17 C 1.37881 * 120.00117 * 204.80660 * 15 13 12 18 18 N 1.31507 * 119.99910 * 172.49814 * 17 15 13 19 19 Si 1.86802 * 119.99715 * 352.49665 * 17 15 13 20 20 H 1.48493 * 109.46883 * 85.15736 * 19 17 15 21 21 H 1.48504 * 109.47046 * 205.15661 * 19 17 15 22 22 H 1.48496 * 109.47308 * 325.15739 * 19 17 15 23 23 C 1.47424 * 125.64926 * 174.70759 * 10 8 4 24 24 H 1.08999 * 109.46602 * 299.99719 * 1 2 3 25 25 H 1.08998 * 109.47067 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47166 * 59.99759 * 1 2 3 27 27 H 1.08995 * 109.46861 * 120.00450 * 2 1 3 28 28 H 1.09009 * 109.46732 * 240.00205 * 2 1 3 29 29 H 1.09000 * 109.47083 * 294.97876 * 3 2 1 30 30 H 1.09003 * 109.47179 * 54.97805 * 3 2 1 31 31 H 1.09010 * 109.47007 * 305.56493 * 4 3 2 32 32 H 1.08988 * 109.47478 * 184.99813 * 5 4 3 33 33 H 1.09004 * 109.46977 * 305.00061 * 5 4 3 34 34 H 1.08996 * 109.46875 * 300.00298 * 6 5 4 35 35 H 1.08997 * 109.46916 * 60.00785 * 6 5 4 36 36 H 1.08997 * 109.47224 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.47391 * 300.00317 * 7 6 5 38 38 H 1.09004 * 109.47303 * 60.00308 * 7 6 5 39 39 H 1.08999 * 109.88439 * 300.44258 * 11 10 8 40 40 H 1.09002 * 109.88390 * 61.45759 * 11 10 8 41 41 H 1.08999 * 110.72207 * 140.55397 * 12 11 10 42 42 H 1.08996 * 110.72294 * 263.65733 * 12 11 10 43 43 H 0.96692 * 113.99688 * 65.97715 * 14 13 12 44 44 H 0.97009 * 119.99934 * 180.02562 * 18 17 15 45 45 H 1.09006 * 110.36515 * 274.74314 * 23 10 8 46 46 H 1.08998 * 110.36929 * 37.06519 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5648 1.4443 0.1262 5 6 4.0634 2.8840 0.2658 6 6 3.5479 3.4772 1.5786 7 6 4.0459 4.9171 1.7179 8 6 4.1715 0.8197 -1.1038 9 8 3.6498 0.9823 -2.1866 10 7 5.2936 0.0804 -1.0006 11 6 6.0835 -0.1118 0.2243 12 6 7.2861 -1.0071 -0.1415 13 6 7.4160 -0.8049 -1.6745 14 8 8.1442 0.3876 -1.9739 15 6 8.0572 -2.0036 -2.3249 16 1 7.9955 -2.9723 -1.8515 17 6 8.7226 -1.8635 -3.5244 18 7 9.4064 -2.8722 -4.0187 19 14 8.6527 -0.2409 -4.4473 20 1 9.7021 0.6709 -3.9254 21 1 8.8829 -0.4840 -5.8941 22 1 7.3175 0.3802 -4.2560 23 6 5.9288 -0.6747 -2.0960 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.8934 -0.5139 -0.8901 29 1 1.7521 1.9297 -0.9315 30 1 1.6052 1.9816 0.8416 31 1 3.8573 0.8715 1.0064 32 1 5.1533 2.8926 0.2665 33 1 3.6958 3.4785 -0.5706 34 1 2.4579 3.4685 1.5779 35 1 3.9155 2.8827 2.4150 36 1 3.6790 5.3395 2.6533 37 1 5.1359 4.9261 1.7184 38 1 3.6780 5.5114 0.8815 39 1 6.4369 0.8513 0.5925 40 1 5.4742 -0.5987 0.9858 41 1 8.1877 -0.6698 0.3697 42 1 7.0769 -2.0501 0.0962 43 1 9.0716 0.3609 -1.7016 44 1 9.8749 -2.7736 -4.8624 45 1 5.4718 -1.6596 -2.1927 46 1 5.8475 -0.1242 -3.0332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592844665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:16 Heat of formation + Delta-G solvation = -137.848870 kcal Electronic energy + Delta-G solvation = -23887.467303 eV Core-core repulsion = 20581.936950 eV Total energy + Delta-G solvation = -3305.530353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.39009 -39.50213 -37.29359 -36.40820 -34.94040 -34.49797 -32.26244 -31.32140 -30.08114 -27.36701 -27.19338 -24.92588 -23.60952 -22.39848 -21.80625 -21.49985 -19.92794 -19.44307 -18.41748 -17.32021 -16.71508 -16.53707 -16.32898 -16.01911 -15.97767 -15.29283 -15.12785 -14.65135 -14.53958 -14.27733 -13.99777 -13.95331 -13.65181 -13.51891 -13.44549 -13.22102 -12.90742 -12.76516 -12.60122 -12.40649 -12.17380 -12.14806 -12.04163 -11.98889 -11.92998 -11.55643 -11.50977 -11.32830 -11.25737 -10.78226 -10.63226 -10.33835 -9.57979 -8.41836 -6.52816 1.37380 1.45961 1.63221 1.66136 2.07027 2.35101 2.91363 3.35312 3.53905 3.70200 3.84045 3.89869 4.13427 4.17832 4.24419 4.27218 4.29941 4.37574 4.45002 4.49567 4.62705 4.67066 4.73067 4.79345 4.84362 4.86715 4.93248 4.95894 4.98048 5.06886 5.10221 5.17958 5.22955 5.25107 5.29744 5.31147 5.37980 5.40155 5.44501 5.51311 5.52477 6.00778 6.55073 6.65099 6.94846 7.19310 7.25730 8.71084 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.004917 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.670285 B = 5692.973320 C = 6262.898482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C -0.100 4.100 4 C -0.092 4.092 5 C -0.105 4.105 6 C -0.115 4.115 7 C -0.154 4.154 8 C 0.520 3.480 9 O -0.599 6.599 10 N -0.616 5.616 11 C 0.106 3.894 12 C -0.138 4.138 13 C 0.214 3.786 14 O -0.565 6.565 15 C -0.546 4.546 16 H 0.057 0.943 17 C 0.034 3.966 18 N -0.928 5.928 19 Si 0.995 3.005 20 H -0.269 1.269 21 H -0.335 1.335 22 H -0.289 1.289 23 C 0.115 3.885 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.385 0.615 44 H 0.268 0.732 45 H 0.066 0.934 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.871 11.336 17.132 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.137 4.137 4 C -0.113 4.113 5 C -0.143 4.143 6 C -0.152 4.152 7 C -0.212 4.212 8 C 0.311 3.689 9 O -0.480 6.480 10 N -0.348 5.348 11 C -0.016 4.016 12 C -0.176 4.176 13 C 0.174 3.826 14 O -0.374 6.374 15 C -0.584 4.584 16 H 0.075 0.925 17 C -0.167 4.167 18 N -0.565 5.565 19 Si 0.830 3.170 20 H -0.195 1.195 21 H -0.268 1.268 22 H -0.216 1.216 23 C -0.009 4.009 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.097 0.903 43 H 0.235 0.765 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.661 11.562 16.235 23.613 hybrid contribution 0.903 -0.135 -1.390 1.663 sum -11.758 11.427 14.846 22.118 Atomic orbital electron populations 1.21714 0.94410 1.01959 1.02206 1.21567 0.97274 0.96720 1.01036 1.21578 0.91721 0.97429 1.03013 1.21457 0.97212 0.98039 0.94619 1.21509 1.00626 0.92538 0.99606 1.21544 1.01570 0.96435 0.95647 1.21784 1.01189 0.96198 1.01984 1.21265 0.78783 0.77194 0.91648 1.90631 1.63186 1.62536 1.31679 1.48823 1.25429 1.48022 1.12565 1.22226 0.92471 1.00785 0.86074 1.23141 0.98420 1.00255 0.95770 1.20136 0.87315 0.82223 0.92971 1.86104 1.27681 1.40603 1.83054 1.21468 1.34683 0.95389 1.06869 0.92512 1.25710 0.93468 0.99797 0.97741 1.70043 1.31936 1.33813 1.20734 0.84965 0.78872 0.79436 0.73753 1.19519 1.26776 1.21587 1.22545 0.93452 0.94535 0.90353 0.90702 0.92544 0.93636 0.90626 0.95536 0.93201 0.87731 0.86834 0.92185 0.93114 0.90555 0.90223 0.91281 0.93026 0.93391 0.89797 0.88816 0.88247 0.90288 0.76463 0.92278 0.91539 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.91 71.98 0.71 -1.95 16 2 C -0.13 -2.88 5.67 30.60 0.17 -2.71 16 3 C -0.10 -2.18 4.32 30.59 0.13 -2.04 16 4 C -0.09 -2.19 1.82 -11.54 -0.02 -2.21 16 5 C -0.10 -2.23 4.67 30.60 0.14 -2.08 16 6 C -0.11 -1.61 5.70 30.60 0.17 -1.44 16 7 C -0.15 -2.11 9.91 71.98 0.71 -1.40 16 8 C 0.52 18.69 5.98 87.66 0.52 19.22 16 9 O -0.60 -27.28 16.22 -3.06 -0.05 -27.33 16 10 N -0.62 -22.44 3.32 -811.35 -2.70 -25.14 16 11 C 0.11 2.87 6.15 86.73 0.53 3.41 16 12 C -0.14 -4.41 6.14 31.79 0.20 -4.21 16 13 C 0.21 9.23 0.70 -10.07 -0.01 9.23 16 14 O -0.56 -23.82 8.92 -148.98 -1.33 -25.15 16 15 C -0.55 -28.86 8.85 25.60 0.23 -28.64 16 16 H 0.06 3.25 8.00 -2.91 -0.02 3.23 16 17 C 0.03 1.90 5.46 84.66 0.46 2.36 16 18 N -0.93 -55.81 13.96 21.45 0.30 -55.51 16 19 Si 0.99 49.99 24.64 68.60 1.69 51.68 16 20 H -0.27 -12.40 7.08 99.48 0.70 -11.70 16 21 H -0.34 -17.39 7.11 99.48 0.71 -16.68 16 22 H -0.29 -15.36 5.52 99.48 0.55 -14.81 16 23 C 0.11 5.17 5.91 86.93 0.51 5.68 16 24 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.03 0.79 7.42 -2.38 -0.02 0.77 16 29 H 0.05 1.35 7.66 -2.39 -0.02 1.33 16 30 H 0.10 1.57 6.32 -2.39 -0.02 1.56 16 31 H 0.11 2.09 6.96 -2.38 -0.02 2.08 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.08 0.93 6.45 -2.39 -0.02 0.92 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.09 1.93 7.72 -2.39 -0.02 1.91 16 41 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.08 2.55 7.99 -2.39 -0.02 2.53 16 43 H 0.39 13.87 8.64 -74.06 -0.64 13.23 16 44 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 45 H 0.07 3.07 8.04 -2.38 -0.02 3.06 16 46 H 0.04 1.95 6.39 -2.39 -0.02 1.94 16 Total: -1.00 -72.38 355.56 2.53 -69.85 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.14 Total: 18.38 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 4.48 Total: -6.78 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -2.40 Total: -80.65 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -1.38 Total: -52.48 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 1.69 Total: 51.68 kcal Total: -72.38 2.53 -69.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592844665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.001 kcal (2) G-P(sol) polarization free energy of solvation -72.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds