Wall clock time and date at job start Tue Mar 31 2020 05:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47022 * 2 1 4 4 C 1.53002 * 109.47022 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47181 * 174.51204 * 4 3 2 6 6 C 1.53000 * 109.47012 * 299.99983 * 3 2 1 7 7 C 1.53002 * 109.47002 * 299.99780 * 6 3 2 8 8 C 1.50692 * 109.47372 * 60.00176 * 3 2 1 9 9 O 1.21285 * 120.00296 * 230.73952 * 8 3 2 10 10 N 1.34780 * 120.00040 * 50.73043 * 8 3 2 11 11 C 1.47425 * 125.64891 * 3.26186 * 10 8 3 12 12 C 1.55129 * 104.72130 * 155.81637 * 11 10 8 13 13 C 1.55149 * 101.48696 * 37.29268 * 12 11 10 14 14 O 1.42898 * 110.72056 * 82.69917 * 13 12 11 15 15 C 1.50705 * 110.87164 * 205.89475 * 13 12 11 16 16 H 1.08001 * 119.99394 * 21.68599 * 15 13 12 17 17 C 1.37872 * 120.00449 * 201.67871 * 15 13 12 18 18 N 1.31508 * 120.00545 * 178.10653 * 17 15 13 19 19 Si 1.86808 * 119.99552 * 358.10552 * 17 15 13 20 20 H 1.48497 * 109.47097 * 90.73138 * 19 17 15 21 21 H 1.48503 * 109.47015 * 210.72878 * 19 17 15 22 22 H 1.48494 * 109.47007 * 330.72919 * 19 17 15 23 23 C 1.47018 * 125.64743 * 183.56404 * 10 8 3 24 24 H 1.08999 * 109.47107 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47011 * 300.00194 * 1 2 3 26 26 H 1.08996 * 109.47028 * 59.99940 * 1 2 3 27 27 H 1.08997 * 109.47455 * 240.00077 * 2 1 3 28 28 H 1.08997 * 109.47416 * 119.99686 * 2 1 3 29 29 H 1.08996 * 109.47261 * 294.51493 * 4 3 2 30 30 H 1.09003 * 109.47188 * 54.51278 * 4 3 2 31 31 H 1.09010 * 109.46717 * 60.00222 * 5 4 3 32 32 H 1.09002 * 109.47344 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.47259 * 300.00290 * 5 4 3 34 34 H 1.08994 * 109.47362 * 60.00252 * 6 3 2 35 35 H 1.09001 * 109.47265 * 180.02562 * 6 3 2 36 36 H 1.08995 * 109.46899 * 60.00826 * 7 6 3 37 37 H 1.09011 * 109.46869 * 179.97438 * 7 6 3 38 38 H 1.08994 * 109.47447 * 300.00420 * 7 6 3 39 39 H 1.09004 * 110.36412 * 274.74746 * 11 10 8 40 40 H 1.08996 * 110.36597 * 37.06405 * 11 10 8 41 41 H 1.09009 * 111.18919 * 279.18549 * 12 11 10 42 42 H 1.09001 * 110.93443 * 155.29219 * 12 11 10 43 43 H 0.96706 * 113.99904 * 61.31041 * 14 13 12 44 44 H 0.96996 * 120.00838 * 180.02562 * 18 17 15 45 45 H 1.08999 * 109.88603 * 300.44296 * 23 10 8 46 46 H 1.09001 * 109.88398 * 61.61008 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8784 -0.1373 6 6 1.5300 2.1638 -1.2492 7 6 2.0401 1.4425 -2.4985 8 6 1.5378 2.1529 1.2304 9 8 0.9849 3.2275 1.1271 10 7 1.7027 1.5941 2.4457 11 6 2.4128 0.3320 2.7219 12 6 2.8611 0.4477 4.2025 13 6 1.6484 1.1789 4.8363 14 8 0.6089 0.2515 5.1547 15 6 2.0666 1.9493 6.0622 16 1 3.1001 2.2335 6.1947 17 6 1.1300 2.2914 7.0143 18 7 1.5011 2.9311 8.1018 19 14 -0.6663 1.8463 6.7596 20 1 -0.9350 0.5128 7.3551 21 1 -1.5262 2.8638 7.4157 22 1 -0.9655 1.8085 5.3056 23 6 1.1989 2.1390 3.7149 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9330 1.0163 0.9358 30 1 3.9337 0.8458 -0.8359 31 1 3.7164 3.4751 0.6993 32 1 5.1701 2.8785 -0.1364 33 1 3.7171 3.3046 -1.0725 34 1 0.4400 2.1638 -1.2493 35 1 1.8937 3.1913 -1.2495 36 1 1.6767 0.4149 -2.4985 37 1 1.6763 1.9561 -3.3885 38 1 3.1300 1.4425 -2.4985 39 1 1.7418 -0.5171 2.5915 40 1 3.2806 0.2344 2.0696 41 1 3.7687 1.0447 4.2938 42 1 2.9984 -0.5384 4.6461 43 1 0.8672 -0.4235 5.7972 44 1 0.8423 3.1715 8.7718 45 1 1.6187 3.1304 3.8853 46 1 0.1106 2.1946 3.6885 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592845558.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:23 Heat of formation + Delta-G solvation = -90.656178 kcal Electronic energy + Delta-G solvation = -24915.999547 eV Core-core repulsion = 21612.515623 eV Total energy + Delta-G solvation = -3303.483924 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.62864 -38.13794 -36.51901 -34.83251 -32.39398 -32.30231 -31.09553 -30.00250 -28.54126 -27.06641 -24.91440 -24.35686 -22.83517 -22.03793 -20.49798 -19.60549 -18.30002 -17.48513 -16.06941 -15.92597 -15.83329 -15.54056 -15.08706 -14.67352 -14.22688 -13.85184 -13.47919 -13.14229 -13.02014 -12.85452 -12.76001 -12.51358 -12.43300 -12.18335 -11.98799 -11.81290 -11.60546 -11.59841 -11.55223 -11.28478 -11.04299 -10.88753 -10.68931 -10.61294 -10.33086 -10.28376 -10.24735 -9.98466 -9.25643 -9.13513 -8.66459 -8.48963 -8.02519 -6.21012 -4.34595 3.07448 3.41768 3.44655 3.56453 3.72440 4.47857 4.57527 4.58021 4.82124 4.97070 5.03683 5.08795 5.17627 5.20419 5.30847 5.35678 5.38183 5.44753 5.50853 5.57474 5.63408 5.73339 5.76103 5.82962 5.89367 5.92311 5.98858 6.02556 6.08610 6.14844 6.21477 6.25245 6.26002 6.31208 6.51028 6.55296 6.60226 6.67341 6.82285 7.01882 7.45810 8.06771 8.10657 8.61401 8.63842 8.79891 9.39736 10.87870 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026400 B = 0.005405 C = 0.005212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.346251 B = 5178.982392 C = 5370.911063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.128 4.128 3 C -0.071 4.071 4 C -0.118 4.118 5 C -0.156 4.156 6 C -0.103 4.103 7 C -0.154 4.154 8 C 0.536 3.464 9 O -0.550 6.550 10 N -0.609 5.609 11 C 0.093 3.907 12 C -0.149 4.149 13 C 0.219 3.781 14 O -0.562 6.562 15 C -0.553 4.553 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.887 5.887 19 Si 0.939 3.061 20 H -0.292 1.292 21 H -0.323 1.323 22 H -0.262 1.262 23 C 0.116 3.884 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.370 0.630 44 H 0.267 0.733 45 H 0.080 0.920 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.371 -8.165 -17.184 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.165 4.165 3 C -0.074 4.074 4 C -0.156 4.156 5 C -0.213 4.213 6 C -0.141 4.141 7 C -0.211 4.211 8 C 0.324 3.676 9 O -0.429 6.429 10 N -0.342 5.342 11 C -0.030 4.030 12 C -0.188 4.188 13 C 0.179 3.821 14 O -0.370 6.370 15 C -0.590 4.590 16 H 0.099 0.901 17 C -0.131 4.131 18 N -0.522 5.522 19 Si 0.774 3.226 20 H -0.219 1.219 21 H -0.254 1.254 22 H -0.188 1.188 23 C -0.006 4.006 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.217 0.783 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.707 -7.096 -17.560 19.132 hybrid contribution -0.587 -0.518 0.537 0.949 sum 2.120 -7.614 -17.024 18.769 Atomic orbital electron populations 1.21834 0.95526 1.01566 1.02359 1.21920 0.96662 0.94628 1.03333 1.20838 0.96529 0.96228 0.93817 1.21744 0.92763 0.98292 1.02770 1.21861 1.00475 0.96425 1.02582 1.21429 1.01150 0.99575 0.91910 1.21896 1.01285 1.00602 0.97290 1.20072 0.79069 0.85172 0.83246 1.90660 1.44335 1.21777 1.86081 1.48627 1.54727 1.24074 1.06752 1.22716 0.95690 0.86788 0.97788 1.23447 1.00696 1.01408 0.93217 1.20054 0.82852 0.86281 0.92891 1.86271 1.41259 1.44516 1.64923 1.21208 0.97349 1.37687 1.02743 0.90087 1.25149 1.00522 0.93117 0.94276 1.69946 1.35430 1.38024 1.08786 0.85856 0.82378 0.75801 0.78574 1.21904 1.25424 1.18760 1.22616 0.99121 0.98171 0.80652 0.92661 0.92507 0.92401 0.90991 0.90214 0.90841 0.90880 0.92374 0.92720 0.92124 0.91401 0.90832 0.92495 0.92879 0.92446 0.91436 0.90870 0.90326 0.90647 0.78254 0.92370 0.90173 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.31 37.16 0.35 -1.58 16 2 C -0.13 -1.46 4.33 -26.73 -0.12 -1.57 16 3 C -0.07 -0.93 0.09 -155.66 -0.01 -0.94 16 4 C -0.12 -1.34 4.32 -26.73 -0.12 -1.46 16 5 C -0.16 -1.88 9.23 37.16 0.34 -1.54 16 6 C -0.10 -1.27 3.48 -26.73 -0.09 -1.37 16 7 C -0.15 -1.41 9.21 37.16 0.34 -1.07 16 8 C 0.54 9.61 4.32 -10.99 -0.05 9.56 16 9 O -0.55 -11.94 16.31 5.55 0.09 -11.85 16 10 N -0.61 -11.22 3.30 -170.39 -0.56 -11.78 16 11 C 0.09 1.40 4.85 -2.41 -0.01 1.39 16 12 C -0.15 -2.58 6.26 -24.47 -0.15 -2.73 16 13 C 0.22 4.75 0.68 -89.94 -0.06 4.69 16 14 O -0.56 -11.79 8.41 -35.23 -0.30 -12.08 16 15 C -0.55 -14.50 8.73 -34.44 -0.30 -14.80 16 16 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 17 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 18 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 19 Si 0.94 23.36 25.06 -169.99 -4.26 19.10 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.32 -8.34 7.11 56.52 0.40 -7.93 16 22 H -0.26 -6.57 5.02 56.52 0.28 -6.28 16 23 C 0.12 2.58 5.79 -3.07 -0.02 2.57 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.88 7.22 -51.93 -0.37 0.50 16 26 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 27 H 0.07 0.67 6.43 -51.93 -0.33 0.33 16 28 H 0.08 0.91 4.15 -51.93 -0.22 0.69 16 29 H 0.07 0.85 5.06 -51.93 -0.26 0.59 16 30 H 0.07 0.67 6.74 -51.93 -0.35 0.32 16 31 H 0.06 0.87 7.40 -51.92 -0.38 0.48 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.68 6.34 -51.93 -0.33 0.35 16 34 H 0.07 0.91 6.43 -51.93 -0.33 0.58 16 35 H 0.07 1.00 6.20 -51.93 -0.32 0.68 16 36 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 37 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.06 0.49 6.56 -51.93 -0.34 0.14 16 39 H 0.07 0.97 6.94 -51.93 -0.36 0.61 16 40 H 0.07 0.92 4.52 -51.93 -0.23 0.69 16 41 H 0.08 1.40 7.99 -51.92 -0.42 0.98 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.37 6.66 8.88 45.56 0.40 7.06 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.08 1.93 7.81 -51.93 -0.41 1.53 16 46 H 0.06 1.52 6.64 -51.93 -0.34 1.18 16 LS Contribution 329.34 15.07 4.96 4.96 Total: -1.00 -31.62 329.34 -5.92 -37.54 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.63 Total: 6.49 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 0.00 Total: -6.88 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.21 Total: -37.29 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.21 Total: -23.93 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.26 Total: 19.10 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.62 -5.92 -37.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592845558.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.118 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds