Wall clock time and date at job start Tue Mar 31 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46916 * 2 1 4 4 C 1.52995 * 109.47589 * 304.27646 * 3 2 1 5 5 C 1.53001 * 109.47157 * 295.45963 * 4 3 2 6 6 C 1.53003 * 109.47054 * 64.27981 * 3 2 1 7 7 H 1.08997 * 109.46880 * 299.99331 * 6 3 2 8 8 C 1.53003 * 109.47054 * 179.97438 * 6 3 2 9 9 C 1.50695 * 109.47192 * 59.99796 * 6 3 2 10 10 O 1.21277 * 120.00176 * 0.02562 * 9 6 3 11 11 N 1.34782 * 119.99679 * 180.02562 * 9 6 3 12 12 C 1.47419 * 125.65185 * 359.97438 * 11 9 6 13 13 C 1.54905 * 104.83623 * 155.91093 * 12 11 9 14 14 C 1.55155 * 101.58205 * 37.00419 * 13 12 11 15 15 O 1.42900 * 110.71820 * 82.86712 * 14 13 12 16 16 C 1.50695 * 110.72105 * 205.95930 * 14 13 12 17 17 H 1.08000 * 120.00249 * 21.58023 * 16 14 13 18 18 C 1.37878 * 120.00226 * 201.57969 * 16 14 13 19 19 N 1.31518 * 120.00090 * 173.25161 * 18 16 14 20 20 Si 1.86803 * 119.99805 * 353.25066 * 18 16 14 21 21 H 1.48498 * 109.46767 * 86.00687 * 20 18 16 22 22 H 1.48501 * 109.46933 * 206.00121 * 20 18 16 23 23 H 1.48494 * 109.46952 * 326.00397 * 20 18 16 24 24 C 1.47025 * 125.64615 * 180.02562 * 11 9 6 25 25 H 1.08999 * 109.47444 * 305.37139 * 1 2 3 26 26 H 1.09002 * 109.46884 * 65.36633 * 1 2 3 27 27 H 1.08997 * 109.47293 * 185.36280 * 1 2 3 28 28 H 1.08996 * 109.47666 * 240.00074 * 2 1 3 29 29 H 1.08996 * 109.47097 * 119.99429 * 2 1 3 30 30 H 1.09006 * 109.47244 * 184.27230 * 3 2 1 31 31 H 1.09006 * 109.46715 * 55.45432 * 4 3 2 32 32 H 1.09000 * 109.47739 * 175.45905 * 4 3 2 33 33 H 1.08999 * 109.47274 * 185.21683 * 5 4 3 34 34 H 1.09003 * 109.47108 * 305.21494 * 5 4 3 35 35 H 1.09000 * 109.47221 * 65.21212 * 5 4 3 36 36 H 1.09001 * 109.47179 * 180.02562 * 8 6 3 37 37 H 1.09007 * 109.46771 * 299.99490 * 8 6 3 38 38 H 1.09001 * 109.47420 * 59.99496 * 8 6 3 39 39 H 1.09003 * 110.36629 * 37.06268 * 12 11 9 40 40 H 1.09005 * 110.36736 * 274.74950 * 12 11 9 41 41 H 1.09006 * 110.99941 * 278.93791 * 13 12 11 42 42 H 1.08997 * 111.04079 * 155.10278 * 13 12 11 43 43 H 0.96708 * 113.99943 * 56.38617 * 15 14 13 44 44 H 0.97003 * 119.99815 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.87939 * 61.60509 * 24 11 9 46 46 H 1.08998 * 109.88629 * 300.44099 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4440 2.1942 -1.1919 5 6 1.9555 1.5737 -2.4936 6 6 1.6197 2.1320 1.2996 7 1 0.5324 2.1311 1.3762 8 6 2.1302 3.5744 1.2999 9 6 2.2067 1.3917 2.4736 10 8 2.8939 0.4096 2.2891 11 7 1.9679 1.8210 3.7287 12 6 1.1548 2.9948 4.0952 13 6 0.6807 2.7126 5.5427 14 6 1.9265 2.0132 6.1477 15 8 2.8857 2.9781 6.5846 16 6 1.5296 1.1065 7.2841 17 1 0.5153 0.7424 7.3555 18 6 2.4613 0.7418 8.2328 19 7 2.0872 0.0616 9.2944 20 14 4.2549 1.2138 8.0101 21 1 4.4786 2.5782 8.5520 22 1 5.1154 0.2457 8.7365 23 1 4.5966 1.1928 6.5652 24 6 2.4761 1.1968 4.9590 25 1 -0.3634 0.5949 0.8379 26 1 -0.3633 0.4284 -0.9342 27 1 -0.3634 -1.0231 0.0960 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 3.1273 1.4436 -0.0766 31 1 0.3567 2.1243 -1.1587 32 1 1.7423 3.2417 -1.1470 33 1 1.6059 2.1651 -3.3399 34 1 3.0454 1.5596 -2.4857 35 1 1.5795 0.5545 -2.5825 36 1 1.8312 4.0655 2.2259 37 1 3.2176 3.5749 1.2235 38 1 1.7060 4.1101 0.4507 39 1 0.2988 3.0871 3.4267 40 1 1.7606 3.9005 4.0642 41 1 -0.1823 2.0468 5.5482 42 1 0.4590 3.6406 6.0697 43 1 2.5385 3.6172 7.2221 44 1 2.7428 -0.1953 9.9616 45 1 3.5658 1.2216 4.9644 46 1 2.1264 0.1665 5.0238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848451.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:43 Heat of formation + Delta-G solvation = -100.636447 kcal Electronic energy + Delta-G solvation = -24184.324812 eV Core-core repulsion = 20880.408111 eV Total energy + Delta-G solvation = -3303.916701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.21524 -38.27961 -36.70544 -34.81975 -32.49009 -32.30917 -31.19610 -30.03233 -28.50141 -26.41611 -25.44493 -23.73386 -23.38372 -22.21127 -19.96746 -19.32598 -18.54853 -17.40859 -16.80559 -15.65756 -15.52248 -15.44066 -14.99197 -14.62521 -14.58649 -13.91477 -13.71887 -13.11639 -13.02398 -12.98068 -12.80203 -12.52590 -12.38587 -12.05955 -11.95232 -11.84742 -11.75992 -11.55300 -11.52721 -11.35790 -10.96854 -10.89549 -10.60821 -10.41481 -10.37691 -10.29125 -10.21275 -10.14324 -9.26589 -9.14204 -8.68748 -8.52334 -8.05080 -6.21577 -4.34115 3.02876 3.40905 3.46142 3.55847 3.68022 4.48074 4.63201 4.65437 4.80742 4.97697 5.07159 5.14648 5.16760 5.18903 5.24218 5.34063 5.40403 5.46124 5.48143 5.58511 5.62039 5.66984 5.76548 5.82492 5.87446 5.88127 5.97742 6.02017 6.06061 6.08674 6.11537 6.26945 6.31242 6.46519 6.51013 6.58593 6.63183 6.68882 6.80671 7.01437 7.46394 8.04131 8.11859 8.60468 8.61948 8.80511 9.40443 10.87256 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.029320 B = 0.004438 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.761023 B = 6307.496611 C = 6431.786724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.134 4.134 3 C -0.064 4.064 4 C -0.125 4.125 5 C -0.151 4.151 6 C -0.104 4.104 7 H 0.094 0.906 8 C -0.153 4.153 9 C 0.526 3.474 10 O -0.545 6.545 11 N -0.611 5.611 12 C 0.100 3.900 13 C -0.149 4.149 14 C 0.219 3.781 15 O -0.564 6.564 16 C -0.553 4.553 17 H 0.081 0.919 18 C 0.077 3.923 19 N -0.886 5.886 20 Si 0.940 3.060 21 H -0.288 1.288 22 H -0.322 1.322 23 H -0.268 1.268 24 C 0.114 3.886 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.372 0.628 44 H 0.267 0.733 45 H 0.065 0.935 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.555 7.863 -17.922 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.171 4.171 3 C -0.083 4.083 4 C -0.162 4.162 5 C -0.208 4.208 6 C -0.125 4.125 7 H 0.112 0.888 8 C -0.211 4.211 9 C 0.314 3.686 10 O -0.424 6.424 11 N -0.344 5.344 12 C -0.022 4.022 13 C -0.188 4.188 14 C 0.179 3.821 15 O -0.372 6.372 16 C -0.591 4.591 17 H 0.099 0.901 18 C -0.128 4.128 19 N -0.521 5.521 20 Si 0.774 3.226 21 H -0.215 1.215 22 H -0.252 1.252 23 H -0.194 1.194 24 C -0.008 4.008 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.220 0.780 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.763 6.883 -18.329 19.773 hybrid contribution 0.451 0.514 0.469 0.829 sum -2.313 7.397 -17.860 19.469 Atomic orbital electron populations 1.21879 0.96728 1.01286 1.01160 1.21817 0.95237 0.96349 1.03722 1.20959 1.00647 0.94912 0.91800 1.21718 1.00807 0.99404 0.94262 1.21780 1.01169 1.00948 0.96930 1.21345 1.01586 0.96004 0.93595 0.88773 1.21984 1.01811 0.94404 1.02858 1.20242 0.80943 0.84536 0.82830 1.90599 1.39837 1.27257 1.84662 1.48725 1.50540 1.29316 1.05864 1.22411 0.93913 0.88654 0.97271 1.23410 1.00480 1.01318 0.93552 1.20072 0.83811 0.86438 0.91810 1.86143 1.41430 1.45467 1.64166 1.21183 0.99097 1.31265 1.07517 0.90105 1.25122 1.00426 0.93256 0.94023 1.69962 1.35439 1.37190 1.09516 0.85872 0.82358 0.76105 0.78224 1.21549 1.25247 1.19381 1.22671 0.99237 0.97521 0.81374 0.92956 0.92967 0.93170 0.92441 0.88954 0.90788 0.91637 0.91868 0.93158 0.92833 0.92543 0.91426 0.92314 0.91473 0.91671 0.91540 0.90301 0.90549 0.78033 0.92349 0.91667 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.13 37.16 0.34 -1.38 16 2 C -0.13 -1.73 5.08 -26.73 -0.14 -1.87 16 3 C -0.06 -0.78 1.40 -90.62 -0.13 -0.90 16 4 C -0.12 -1.16 4.86 -26.73 -0.13 -1.29 16 5 C -0.15 -1.30 9.53 37.16 0.35 -0.95 16 6 C -0.10 -1.34 1.42 -91.77 -0.13 -1.47 16 7 H 0.09 1.10 6.14 -51.93 -0.32 0.79 16 8 C -0.15 -1.68 8.66 37.16 0.32 -1.36 16 9 C 0.53 9.30 6.90 -10.99 -0.08 9.22 16 10 O -0.54 -11.43 13.99 5.56 0.08 -11.35 16 11 N -0.61 -11.25 3.32 -170.53 -0.57 -11.82 16 12 C 0.10 1.51 5.13 -2.53 -0.01 1.49 16 13 C -0.15 -2.56 6.22 -24.59 -0.15 -2.72 16 14 C 0.22 4.74 0.68 -89.94 -0.06 4.68 16 15 O -0.56 -11.86 8.83 -35.23 -0.31 -12.17 16 16 C -0.55 -14.55 8.72 -34.44 -0.30 -14.85 16 17 H 0.08 2.30 7.98 -52.49 -0.42 1.88 16 18 C 0.08 2.15 5.46 -17.82 -0.10 2.05 16 19 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 20 Si 0.94 23.56 24.91 -169.99 -4.23 19.32 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.32 -8.28 7.11 56.52 0.40 -7.88 16 23 H -0.27 -6.79 5.26 56.52 0.30 -6.49 16 24 C 0.11 2.52 5.68 -3.06 -0.02 2.50 16 25 H 0.05 0.60 6.30 -51.93 -0.33 0.28 16 26 H 0.05 0.50 6.58 -51.93 -0.34 0.16 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.68 6.89 -51.93 -0.36 0.33 16 29 H 0.09 1.52 5.43 -51.93 -0.28 1.23 16 30 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.07 0.58 6.22 -51.93 -0.32 0.26 16 32 H 0.06 0.54 6.20 -51.93 -0.32 0.22 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.49 6.91 -51.93 -0.36 0.13 16 36 H 0.07 0.73 4.99 -51.93 -0.26 0.47 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.58 6.33 -51.93 -0.33 0.25 16 39 H 0.06 0.80 7.36 -51.93 -0.38 0.42 16 40 H 0.07 0.93 7.07 -51.93 -0.37 0.56 16 41 H 0.08 1.40 7.99 -51.93 -0.41 0.98 16 42 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 43 H 0.37 6.61 9.06 45.56 0.41 7.02 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.07 1.58 6.37 -51.93 -0.33 1.25 16 46 H 0.08 1.92 7.82 -51.93 -0.41 1.52 16 LS Contribution 336.05 15.07 5.06 5.06 Total: -1.00 -31.27 336.05 -6.32 -37.59 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.90 Total: 5.66 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -0.23 Total: -6.83 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.21 Total: -37.28 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.23 Total: -23.52 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -4.23 Total: 19.32 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.27 -6.32 -37.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848451.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.050 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds