Wall clock time and date at job start Tue Mar 31 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47531 * 2 1 4 4 C 1.53000 * 109.47143 * 64.99957 * 3 2 1 5 5 C 1.52999 * 109.47152 * 59.84417 * 4 3 2 6 6 C 1.53002 * 109.47314 * 184.99973 * 3 2 1 7 7 H 1.08992 * 109.46749 * 297.67290 * 6 3 2 8 8 C 1.53004 * 109.47008 * 57.67542 * 6 3 2 9 9 C 1.50700 * 109.46794 * 177.67146 * 6 3 2 10 10 O 1.21274 * 120.00521 * 327.51319 * 9 6 3 11 11 N 1.34776 * 119.99653 * 147.50681 * 9 6 3 12 12 C 1.47026 * 125.65075 * 5.27068 * 11 9 6 13 13 C 1.54318 * 107.27643 * 181.01993 * 12 11 9 14 14 C 1.55166 * 102.93998 * 22.18834 * 13 12 11 15 15 O 1.42894 * 111.00353 * 82.57626 * 14 13 12 16 16 C 1.50704 * 111.00183 * 206.39112 * 14 13 12 17 17 H 1.07994 * 120.00329 * 118.55116 * 16 14 13 18 18 C 1.37883 * 119.99813 * 298.54270 * 16 14 13 19 19 N 1.31513 * 119.99841 * 0.02562 * 18 16 14 20 20 Si 1.86792 * 119.99892 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47292 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47246 * 120.00150 * 20 18 16 23 23 H 1.48500 * 109.47097 * 240.00170 * 20 18 16 24 24 C 1.47429 * 125.65133 * 184.95396 * 11 9 6 25 25 H 1.08997 * 109.47288 * 59.99606 * 1 2 3 26 26 H 1.08995 * 109.47405 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47057 * 300.00295 * 1 2 3 28 28 H 1.09008 * 109.47285 * 119.99948 * 2 1 3 29 29 H 1.09007 * 109.47057 * 239.99705 * 2 1 3 30 30 H 1.09001 * 109.47043 * 305.00474 * 3 2 1 31 31 H 1.08999 * 109.47015 * 179.84428 * 4 3 2 32 32 H 1.09004 * 109.46940 * 299.84525 * 4 3 2 33 33 H 1.09005 * 109.47159 * 301.15255 * 5 4 3 34 34 H 1.08996 * 109.47272 * 61.15208 * 5 4 3 35 35 H 1.09000 * 109.46993 * 181.15297 * 5 4 3 36 36 H 1.08992 * 109.46986 * 173.86748 * 8 6 3 37 37 H 1.09002 * 109.46962 * 293.86920 * 8 6 3 38 38 H 1.09001 * 109.47102 * 53.86571 * 8 6 3 39 39 H 1.09000 * 109.87824 * 300.43402 * 12 11 9 40 40 H 1.09000 * 109.88370 * 61.59817 * 12 11 9 41 41 H 1.08998 * 110.72663 * 140.54926 * 13 12 11 42 42 H 1.09008 * 110.71801 * 263.65089 * 13 12 11 43 43 H 0.96698 * 113.99967 * 61.45240 * 15 14 13 44 44 H 0.97006 * 119.99865 * 180.02562 * 19 18 16 45 45 H 1.09005 * 110.36504 * 274.75182 * 24 11 9 46 46 H 1.09000 * 110.36421 * 37.06928 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6353 2.1265 1.3073 5 6 2.2421 1.3676 2.4892 6 6 3.5649 1.4442 -0.1257 7 1 4.0011 0.9412 0.7372 8 6 3.9721 0.7092 -1.4044 9 6 4.0625 2.8656 -0.1832 10 8 3.3834 3.7253 -0.7033 11 7 5.2622 3.1813 0.3434 12 6 6.2307 2.2267 0.9024 13 6 7.4394 3.0427 1.4070 14 6 6.8396 4.4581 1.6179 15 8 6.1804 4.5518 2.8822 16 6 7.9009 5.5198 1.4851 17 1 7.8202 6.2703 0.7128 18 6 8.9747 5.5330 2.3498 19 7 9.0731 4.6188 3.2901 20 14 10.2898 6.8493 2.1857 21 1 9.9486 7.7519 1.0570 22 1 10.3634 7.6350 3.4436 23 1 11.6033 6.2071 1.9257 24 6 5.8238 4.5404 0.4484 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.6054 1.9815 -0.8418 31 1 2.0011 3.1533 1.3085 32 1 0.5489 2.1278 1.3956 33 1 1.8924 0.3353 2.4762 34 1 3.3292 1.3839 2.4119 35 1 1.9370 1.8429 3.4214 36 1 5.0479 0.8039 -1.5509 37 1 3.7086 -0.3449 -1.3171 38 1 3.4496 1.1450 -2.2560 39 1 5.7785 1.6828 1.7318 40 1 6.5515 1.5285 0.1294 41 1 7.8124 2.6379 2.3478 42 1 8.2304 3.0639 0.6572 43 1 6.7626 4.4080 3.6409 44 1 9.8284 4.6283 3.8987 45 1 6.3292 4.8146 -0.4777 46 1 5.0373 5.2589 0.6794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592848452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:46 Heat of formation + Delta-G solvation = -112.926805 kcal Electronic energy + Delta-G solvation = -24181.058525 eV Core-core repulsion = 20876.608874 eV Total energy + Delta-G solvation = -3304.449651 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.98878 -37.92298 -36.57756 -34.26770 -32.23569 -32.17254 -31.23439 -29.63339 -28.29052 -26.35188 -25.44614 -23.64818 -23.23141 -21.95979 -19.85543 -19.18797 -18.17200 -17.18809 -16.76188 -15.69356 -15.29261 -14.97665 -14.84202 -14.50830 -14.28527 -13.86083 -13.55578 -13.14783 -12.92120 -12.88475 -12.54911 -12.30099 -12.16561 -11.83290 -11.80230 -11.71661 -11.44435 -11.39251 -11.33434 -11.28058 -10.91230 -10.89644 -10.61379 -10.46251 -10.35578 -10.26558 -10.14023 -10.02310 -9.40799 -9.13031 -8.69240 -8.22370 -7.94075 -6.29733 -4.37450 3.15167 3.17886 3.27134 3.31761 3.60995 4.26132 4.72605 4.75305 4.86682 4.97392 5.09960 5.23271 5.33792 5.42199 5.47271 5.52022 5.53920 5.58649 5.67346 5.75073 5.80407 5.83883 5.87417 5.93417 5.95497 6.00764 6.06451 6.13226 6.16179 6.29004 6.33010 6.39147 6.43916 6.47552 6.60954 6.67574 6.90041 6.99673 7.29069 7.33771 7.72306 8.01780 8.20501 8.65073 8.73333 9.29760 9.38535 10.77640 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.033533 B = 0.004145 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.807129 B = 6754.217913 C = 6914.052961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.069 4.069 4 C -0.123 4.123 5 C -0.155 4.155 6 C -0.105 4.105 7 H 0.090 0.910 8 C -0.140 4.140 9 C 0.531 3.469 10 O -0.556 6.556 11 N -0.607 5.607 12 C 0.100 3.900 13 C -0.136 4.136 14 C 0.248 3.752 15 O -0.582 6.582 16 C -0.534 4.534 17 H 0.065 0.935 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.902 3.098 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.120 3.880 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.380 0.620 44 H 0.267 0.733 45 H 0.069 0.931 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.298 -11.155 -3.760 15.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.088 4.088 4 C -0.160 4.160 5 C -0.212 4.212 6 C -0.127 4.127 7 H 0.108 0.892 8 C -0.198 4.198 9 C 0.319 3.681 10 O -0.436 6.436 11 N -0.339 5.339 12 C -0.023 4.023 13 C -0.175 4.175 14 C 0.208 3.792 15 O -0.390 6.390 16 C -0.573 4.573 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.729 3.271 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.001 4.001 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.230 0.770 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.126 -10.659 -4.303 15.319 hybrid contribution 1.468 0.502 0.418 1.606 sum -8.658 -10.157 -3.886 13.901 Atomic orbital electron populations 1.21799 0.95996 1.01128 1.01999 1.21702 0.95837 0.96423 1.02137 1.21039 0.92724 0.96032 0.99026 1.21579 1.00374 1.00117 0.93945 1.21886 1.01348 0.99978 0.97997 1.21376 0.97213 0.93676 1.00394 0.89163 1.21749 1.01614 1.00030 0.96392 1.20140 0.79844 0.90405 0.77685 1.90630 1.56508 1.50925 1.45494 1.48648 1.16575 1.09889 1.58802 1.22178 0.91083 0.92397 0.96675 1.23172 0.94494 0.98063 1.01731 1.19642 0.87368 0.91247 0.80967 1.86138 1.41157 1.94974 1.16732 1.21495 1.05871 1.13374 1.16526 0.91718 1.24983 0.97752 0.95680 0.94564 1.69727 1.31516 1.33907 1.18288 0.86375 0.80936 0.81483 0.78270 1.19582 1.20778 1.20846 1.22385 0.96595 0.82607 0.98546 0.92842 0.93118 0.92475 0.91592 0.91747 0.90175 0.91462 0.91953 0.92694 0.92475 0.92972 0.92379 0.91495 0.92047 0.92547 0.92991 0.89580 0.91435 0.77049 0.92319 0.91238 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.67 37.16 0.36 -1.02 16 2 C -0.12 -1.24 4.92 -26.73 -0.13 -1.37 16 3 C -0.07 -0.90 1.45 -90.62 -0.13 -1.03 16 4 C -0.12 -1.68 5.23 -26.73 -0.14 -1.82 16 5 C -0.16 -1.96 9.22 37.16 0.34 -1.62 16 6 C -0.11 -1.49 1.62 -91.77 -0.15 -1.64 16 7 H 0.09 1.22 5.19 -51.93 -0.27 0.95 16 8 C -0.14 -1.68 8.57 37.16 0.32 -1.36 16 9 C 0.53 9.99 5.91 -10.99 -0.06 9.92 16 10 O -0.56 -12.20 15.96 5.56 0.09 -12.11 16 11 N -0.61 -12.03 3.33 -170.38 -0.57 -12.59 16 12 C 0.10 1.79 6.24 -3.06 -0.02 1.77 16 13 C -0.14 -2.88 5.37 -24.89 -0.13 -3.02 16 14 C 0.25 5.94 0.87 -89.50 -0.08 5.86 16 15 O -0.58 -14.62 13.17 -35.23 -0.46 -15.09 16 16 C -0.53 -13.85 8.27 -34.44 -0.28 -14.14 16 17 H 0.06 1.69 7.79 -52.49 -0.41 1.28 16 18 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 19 N -0.90 -22.74 10.76 55.43 0.60 -22.14 16 20 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 C 0.12 2.71 6.08 -2.41 -0.01 2.70 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.53 6.57 -51.93 -0.34 0.18 16 28 H 0.07 0.64 6.15 -51.92 -0.32 0.32 16 29 H 0.06 0.59 6.25 -51.93 -0.32 0.27 16 30 H 0.08 1.16 7.77 -51.93 -0.40 0.75 16 31 H 0.07 1.15 6.92 -51.93 -0.36 0.79 16 32 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 33 H 0.05 0.58 6.26 -51.93 -0.32 0.26 16 34 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.71 8.02 -51.93 -0.42 0.29 16 37 H 0.07 0.64 6.63 -51.93 -0.34 0.29 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.95 7.63 -51.93 -0.40 0.56 16 40 H 0.05 0.81 8.02 -51.93 -0.42 0.39 16 41 H 0.09 1.90 7.54 -51.93 -0.39 1.51 16 42 H 0.07 1.45 8.04 -51.92 -0.42 1.04 16 43 H 0.38 9.51 7.56 45.56 0.34 9.85 16 44 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 45 H 0.07 1.54 8.04 -51.93 -0.42 1.12 16 46 H 0.07 1.64 8.09 -51.93 -0.42 1.22 16 LS Contribution 349.12 15.07 5.26 5.26 Total: -1.00 -27.84 349.12 -7.45 -35.30 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -7.13 Total: 11.32 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -0.22 Total: -5.00 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.03 Total: -34.74 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.38 Total: -27.20 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.84 -7.45 -35.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592848452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.632 kcal (2) G-P(sol) polarization free energy of solvation -27.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds