Wall clock time and date at job start Tue Mar 31 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46926 * 2 1 4 4 C 1.52998 * 109.46686 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46987 * 299.99579 * 4 3 2 6 6 C 1.52998 * 109.47588 * 59.99944 * 4 3 2 7 7 C 1.52995 * 109.46989 * 63.69723 * 6 4 3 8 8 C 1.50702 * 109.46948 * 180.02562 * 4 3 2 9 9 O 1.21281 * 120.00125 * 355.29557 * 8 4 3 10 10 N 1.34780 * 120.00165 * 175.30795 * 8 4 3 11 11 C 1.47026 * 125.64769 * 354.45804 * 10 8 4 12 12 C 1.54318 * 107.27216 * 181.02962 * 11 10 8 13 13 C 1.55152 * 102.94109 * 22.19215 * 12 11 10 14 14 O 1.42897 * 111.03904 * 82.59293 * 13 12 11 15 15 C 1.50709 * 111.00351 * 206.42513 * 13 12 11 16 16 H 1.07993 * 119.99743 * 112.20136 * 15 13 12 17 17 C 1.37875 * 119.99750 * 292.47439 * 15 13 12 18 18 N 1.31514 * 120.00264 * 359.72187 * 17 15 13 19 19 Si 1.86803 * 119.99973 * 179.72657 * 17 15 13 20 20 H 1.48502 * 109.47483 * 89.99350 * 19 17 15 21 21 H 1.48492 * 109.47241 * 210.00039 * 19 17 15 22 22 H 1.48507 * 109.46594 * 329.99925 * 19 17 15 23 23 C 1.47421 * 125.64903 * 174.42612 * 10 8 4 24 24 H 1.09004 * 109.47349 * 60.00302 * 1 2 3 25 25 H 1.08998 * 109.47381 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47527 * 300.00020 * 1 2 3 27 27 H 1.09002 * 109.46904 * 239.99699 * 2 1 3 28 28 H 1.09001 * 109.46900 * 120.00296 * 2 1 3 29 29 H 1.08992 * 109.47415 * 60.00009 * 3 2 1 30 30 H 1.09004 * 109.47181 * 299.99557 * 3 2 1 31 31 H 1.09003 * 109.47088 * 284.99425 * 5 4 3 32 32 H 1.08997 * 109.46806 * 45.00161 * 5 4 3 33 33 H 1.09004 * 109.46930 * 164.99660 * 5 4 3 34 34 H 1.08997 * 109.47091 * 183.69934 * 6 4 3 35 35 H 1.09007 * 109.47016 * 303.69610 * 6 4 3 36 36 H 1.08995 * 109.47174 * 60.00528 * 7 6 4 37 37 H 1.09005 * 109.46807 * 179.97438 * 7 6 4 38 38 H 1.08997 * 109.47377 * 300.00036 * 7 6 4 39 39 H 1.08999 * 109.87964 * 300.44696 * 11 10 8 40 40 H 1.08996 * 109.87903 * 61.60807 * 11 10 8 41 41 H 1.08998 * 110.71834 * 263.83176 * 12 11 10 42 42 H 1.09000 * 110.72331 * 140.55951 * 12 11 10 43 43 H 0.96695 * 114.00631 * 64.60047 * 14 13 12 44 44 H 0.97001 * 119.99764 * 180.02562 * 18 17 15 45 45 H 1.08995 * 110.37303 * 37.05991 * 23 10 8 46 46 H 1.09003 * 110.45769 * 274.78625 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0804 0.7211 1.2484 6 6 4.0795 0.7214 -1.2501 7 6 3.6464 1.4945 -2.4973 8 6 4.0723 2.8633 0.0000 9 8 3.2875 3.7840 -0.0853 10 7 5.3937 3.1108 0.0951 11 6 6.4405 2.1028 0.3184 12 6 7.7895 2.8493 0.3815 13 6 7.3693 4.2953 0.7554 14 8 7.1719 4.4240 2.1648 15 6 8.3812 5.2968 0.2611 16 1 8.1180 5.9859 -0.5277 17 6 9.6447 5.3294 0.8120 18 7 9.9651 4.4903 1.7726 19 14 10.9014 6.5657 0.1941 20 1 10.7943 7.8181 0.9849 21 1 12.2665 6.0009 0.3439 22 1 10.6424 6.8610 -1.2381 23 6 6.0290 4.4371 -0.0083 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9512 1.3651 2.1182 32 1 3.5164 -0.2006 1.3915 33 1 5.1373 0.4848 1.1250 34 1 5.1674 0.6636 -1.2180 35 1 3.6630 -0.2854 -1.2839 36 1 4.0629 2.5012 -2.4636 37 1 4.0098 0.9810 -3.3875 38 1 2.5584 1.5523 -2.5295 39 1 6.2599 1.5831 1.2593 40 1 6.4497 1.3893 -0.5056 41 1 8.2863 2.8308 -0.5885 42 1 8.4309 2.4225 1.1526 43 1 7.9746 4.2941 2.6880 44 1 10.8540 4.5136 2.1604 45 1 5.4029 5.1954 0.4618 46 1 6.2123 4.6914 -1.0523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853394.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:38 Heat of formation + Delta-G solvation = -102.027609 kcal Electronic energy + Delta-G solvation = -24350.590302 eV Core-core repulsion = 21046.613275 eV Total energy + Delta-G solvation = -3303.977026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.30688 -37.71863 -36.37789 -34.38430 -32.92850 -32.14818 -30.53023 -29.65061 -28.31240 -26.53851 -25.34447 -23.85544 -23.15269 -22.01123 -20.07571 -19.46706 -18.30897 -17.16900 -16.02138 -15.66227 -15.52798 -15.10825 -14.96681 -14.36723 -14.19462 -13.97852 -13.54328 -13.06732 -13.00945 -12.88295 -12.58397 -12.21640 -12.06902 -11.95550 -11.80048 -11.73248 -11.58830 -11.34595 -11.26137 -11.11454 -10.92600 -10.79684 -10.74781 -10.52076 -10.47407 -10.25745 -10.16321 -9.99158 -9.43037 -9.09055 -8.67080 -8.19960 -7.89512 -6.30435 -4.37579 3.16756 3.19301 3.26670 3.29681 3.61104 4.25715 4.67785 4.70716 4.86052 4.97057 5.06563 5.11733 5.21018 5.33454 5.47873 5.55072 5.59103 5.61305 5.65777 5.75581 5.79704 5.84043 5.87253 5.89612 5.94810 6.02996 6.06999 6.12294 6.17808 6.25620 6.29252 6.37213 6.40947 6.46903 6.57968 6.68739 6.89067 7.01351 7.28661 7.31935 7.72992 8.00628 8.22488 8.63658 8.74102 9.31194 9.47459 10.77471 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.035758 B = 0.004160 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.864320 B = 6729.227077 C = 6811.929376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.095 4.095 4 C -0.074 4.074 5 C -0.157 4.157 6 C -0.118 4.118 7 C -0.155 4.155 8 C 0.535 3.465 9 O -0.556 6.556 10 N -0.603 5.603 11 C 0.091 3.909 12 C -0.141 4.141 13 C 0.250 3.750 14 O -0.583 6.583 15 C -0.534 4.534 16 H 0.064 0.936 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.903 3.097 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.118 3.882 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.384 0.616 44 H 0.269 0.731 45 H 0.069 0.931 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.653 -11.463 -3.733 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.132 4.132 4 C -0.077 4.077 5 C -0.214 4.214 6 C -0.155 4.155 7 C -0.212 4.212 8 C 0.324 3.676 9 O -0.435 6.435 10 N -0.335 5.335 11 C -0.031 4.031 12 C -0.180 4.180 13 C 0.209 3.791 14 O -0.393 6.393 15 C -0.573 4.573 16 H 0.083 0.917 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.731 3.269 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.003 4.003 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.236 0.764 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.603 -10.927 -3.858 15.707 hybrid contribution 1.485 0.512 -0.096 1.574 sum -9.118 -10.415 -3.953 14.396 Atomic orbital electron populations 1.21759 0.96055 1.01172 1.01874 1.21709 0.95616 0.97098 1.02135 1.21432 0.92211 0.96290 1.03304 1.20757 0.96982 0.92798 0.97132 1.22229 1.02297 1.00454 0.96409 1.21737 1.01607 0.99067 0.93082 1.21832 1.01629 1.00651 0.97099 1.20061 0.80874 0.90657 0.76032 1.90638 1.54718 1.46600 1.51569 1.48507 1.05158 1.10068 1.69790 1.22529 0.89398 0.91539 0.99641 1.23228 0.93355 0.99024 1.02365 1.19570 0.88983 0.90710 0.79857 1.86112 1.39642 1.94810 1.18746 1.21489 0.96521 1.18489 1.20785 0.91732 1.24978 0.98147 0.95386 0.94446 1.69571 1.21674 1.36598 1.25924 0.86410 0.80013 0.81139 0.79380 1.20392 1.21052 1.19718 1.22352 0.94609 0.83839 0.99534 0.92840 0.93032 0.92793 0.91730 0.91660 0.91573 0.91025 0.92174 0.91484 0.90832 0.90876 0.90854 0.92573 0.92743 0.92345 0.91536 0.92562 0.91475 0.89980 0.76436 0.92130 0.91224 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 37.16 0.37 -0.99 16 2 C -0.13 -1.27 5.27 -26.73 -0.14 -1.41 16 3 C -0.09 -1.24 3.30 -26.73 -0.09 -1.32 16 4 C -0.07 -1.04 0.30 -155.66 -0.05 -1.08 16 5 C -0.16 -2.01 7.60 37.16 0.28 -1.72 16 6 C -0.12 -1.43 4.56 -26.73 -0.12 -1.55 16 7 C -0.15 -1.96 9.34 37.16 0.35 -1.61 16 8 C 0.54 10.14 5.08 -10.98 -0.06 10.08 16 9 O -0.56 -12.40 16.21 5.56 0.09 -12.31 16 10 N -0.60 -11.90 3.32 -170.52 -0.57 -12.46 16 11 C 0.09 1.62 5.08 -3.06 -0.02 1.60 16 12 C -0.14 -2.97 5.63 -24.90 -0.14 -3.11 16 13 C 0.25 6.01 0.88 -89.62 -0.08 5.93 16 14 O -0.58 -15.01 13.16 -35.23 -0.46 -15.47 16 15 C -0.53 -13.88 8.25 -34.44 -0.28 -14.16 16 16 H 0.06 1.67 7.77 -52.49 -0.41 1.27 16 17 C 0.07 1.85 5.31 -17.82 -0.09 1.76 16 18 N -0.90 -22.96 10.80 55.43 0.60 -22.36 16 19 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 C 0.12 2.67 6.11 -2.53 -0.02 2.66 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.59 6.35 -51.93 -0.33 0.27 16 28 H 0.06 0.61 6.14 -51.93 -0.32 0.29 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.00 6.43 -51.93 -0.33 0.67 16 31 H 0.06 0.86 8.05 -51.93 -0.42 0.44 16 32 H 0.07 0.69 5.78 -51.93 -0.30 0.39 16 33 H 0.07 0.92 4.93 -51.93 -0.26 0.66 16 34 H 0.07 0.91 5.18 -51.93 -0.27 0.64 16 35 H 0.07 0.73 6.24 -51.93 -0.32 0.41 16 36 H 0.06 0.86 7.11 -51.93 -0.37 0.49 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.71 6.52 -51.93 -0.34 0.37 16 39 H 0.07 1.12 5.68 -51.93 -0.30 0.83 16 40 H 0.06 0.86 5.60 -51.93 -0.29 0.57 16 41 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 42 H 0.08 1.80 7.84 -51.93 -0.41 1.40 16 43 H 0.38 9.91 7.02 45.56 0.32 10.23 16 44 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 45 H 0.07 1.70 7.99 -51.93 -0.41 1.28 16 46 H 0.07 1.50 8.01 -51.93 -0.42 1.08 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -28.20 340.66 -7.15 -35.35 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -6.83 Total: 11.98 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -0.09 Total: -4.94 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.03 Total: -34.82 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.37 Total: -27.78 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.20 -7.15 -35.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853394.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.682 kcal (2) G-P(sol) polarization free energy of solvation -28.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds