Wall clock time and date at job start Tue Mar 31 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47045 * 2 1 4 4 C 1.53004 * 109.47045 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47201 * 60.00108 * 4 3 2 6 6 C 1.52998 * 109.47026 * 299.99657 * 4 3 2 7 7 C 1.52995 * 109.47463 * 295.09842 * 6 4 3 8 8 C 1.50706 * 109.47086 * 179.97438 * 4 3 2 9 9 O 1.21285 * 119.99848 * 6.19750 * 8 4 3 10 10 N 1.34777 * 119.99775 * 186.19874 * 8 4 3 11 11 C 1.47416 * 125.65009 * 5.35829 * 10 8 4 12 12 C 1.54903 * 104.83404 * 204.09398 * 11 10 8 13 13 C 1.55151 * 101.58312 * 322.99100 * 12 11 10 14 14 O 1.42903 * 110.72486 * 277.14059 * 13 12 11 15 15 C 1.50703 * 110.72341 * 154.03967 * 13 12 11 16 16 H 1.08001 * 120.00068 * 241.45697 * 15 13 12 17 17 C 1.37881 * 119.99603 * 61.45629 * 15 13 12 18 18 N 1.31512 * 120.00040 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99654 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47230 * 60.00121 * 19 17 15 21 21 H 1.48496 * 109.47007 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47274 * 299.99980 * 19 17 15 23 23 C 1.47022 * 125.64453 * 185.05788 * 10 8 4 24 24 H 1.08995 * 109.47102 * 60.00163 * 1 2 3 25 25 H 1.08998 * 109.47069 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47246 * 300.00095 * 1 2 3 27 27 H 1.09004 * 109.46928 * 119.99863 * 2 1 3 28 28 H 1.09000 * 109.46752 * 239.99907 * 2 1 3 29 29 H 1.09004 * 109.47146 * 299.99729 * 3 2 1 30 30 H 1.09004 * 109.47177 * 59.99862 * 3 2 1 31 31 H 1.08998 * 109.47060 * 59.99407 * 5 4 3 32 32 H 1.09000 * 109.47272 * 180.02562 * 5 4 3 33 33 H 1.09010 * 109.46928 * 300.00301 * 5 4 3 34 34 H 1.09004 * 109.46904 * 55.09588 * 6 4 3 35 35 H 1.08999 * 109.47079 * 175.09066 * 6 4 3 36 36 H 1.08998 * 109.47060 * 180.02562 * 7 6 4 37 37 H 1.09004 * 109.46853 * 299.99777 * 7 6 4 38 38 H 1.08999 * 109.47607 * 59.99547 * 7 6 4 39 39 H 1.09001 * 110.37133 * 322.93252 * 11 10 8 40 40 H 1.09006 * 110.36482 * 85.14280 * 11 10 8 41 41 H 1.09001 * 111.00747 * 81.06459 * 12 11 10 42 42 H 1.09000 * 111.00737 * 204.91636 * 12 11 10 43 43 H 0.96705 * 113.99746 * 298.54449 * 14 13 12 44 44 H 0.97003 * 119.99762 * 179.97438 * 18 17 15 45 45 H 1.08999 * 109.88131 * 298.39049 * 23 10 8 46 46 H 1.08994 * 109.88844 * 59.55533 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0795 0.7214 -1.2502 6 6 4.0805 0.7211 1.2483 7 6 3.6742 1.5098 2.4947 8 6 4.0724 2.8633 -0.0013 9 8 3.2900 3.7832 0.1122 10 7 5.3910 3.1118 -0.1279 11 6 6.4347 2.1027 -0.3840 12 6 7.7396 2.7347 0.1613 13 6 7.5448 4.2268 -0.2169 14 8 7.9271 4.4585 -1.5742 15 6 8.3244 5.1191 0.7143 16 1 7.8075 5.8409 1.3294 17 6 9.6976 5.0140 0.7811 18 7 10.3270 4.1354 0.0318 19 14 10.6638 6.1196 1.9359 20 1 10.2178 5.8864 3.3330 21 1 12.1117 5.8105 1.8210 22 1 10.4300 7.5402 1.5722 23 6 6.0259 4.4349 -0.0398 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 3.7157 1.2354 -2.1399 32 1 5.1695 0.7210 -1.2504 33 1 3.7161 -0.3063 -1.2502 34 1 3.6472 -0.2781 1.2934 35 1 5.1670 0.6443 1.2050 36 1 4.0383 0.9961 3.3845 37 1 4.1075 2.5090 2.4497 38 1 2.5878 1.5866 2.5381 39 1 6.2088 1.1794 0.1493 40 1 6.5223 1.9106 -1.4534 41 1 7.8114 2.6118 1.2420 42 1 8.6142 2.3164 -0.3369 43 1 8.8569 4.2672 -1.7591 44 1 11.2931 4.0617 0.0785 45 1 5.6440 5.0826 -0.8289 46 1 5.8255 4.8780 0.9357 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:41 Heat of formation + Delta-G solvation = -102.132794 kcal Electronic energy + Delta-G solvation = -24372.373806 eV Core-core repulsion = 21068.392218 eV Total energy + Delta-G solvation = -3303.981587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34698 -37.74509 -36.40338 -34.42644 -32.93526 -32.22309 -30.51935 -29.54723 -28.35664 -26.54247 -25.34551 -23.84930 -23.13541 -22.05102 -20.20657 -19.38944 -18.33501 -17.15702 -15.98413 -15.77810 -15.55515 -15.07354 -14.92868 -14.32999 -14.23131 -13.94012 -13.55352 -13.12508 -12.95947 -12.90276 -12.61051 -12.19638 -12.10175 -11.90750 -11.78990 -11.73489 -11.56124 -11.38248 -11.26462 -11.10167 -10.91247 -10.77778 -10.72519 -10.64277 -10.51425 -10.28836 -10.12256 -10.06201 -9.40221 -9.09492 -8.66854 -8.21887 -7.95022 -6.29501 -4.36899 3.14010 3.21274 3.25877 3.29454 3.57982 4.26179 4.66940 4.69657 4.86813 4.98048 5.06199 5.11407 5.19086 5.32864 5.44617 5.52012 5.60367 5.65932 5.69902 5.75617 5.79334 5.83586 5.87986 5.90407 5.97661 6.00915 6.03427 6.10993 6.15084 6.22626 6.33138 6.35336 6.37603 6.48164 6.57400 6.71963 6.91349 7.00242 7.29480 7.34589 7.72186 8.02274 8.18323 8.64551 8.71405 9.29611 9.38737 10.77933 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.032054 B = 0.004302 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.328519 B = 6507.713280 C = 6635.110285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.094 4.094 4 C -0.074 4.074 5 C -0.160 4.160 6 C -0.117 4.117 7 C -0.155 4.155 8 C 0.534 3.466 9 O -0.556 6.556 10 N -0.605 5.605 11 C 0.089 3.911 12 C -0.135 4.135 13 C 0.248 3.752 14 O -0.586 6.586 15 C -0.535 4.535 16 H 0.063 0.937 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.902 3.098 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.122 3.878 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.381 0.619 44 H 0.268 0.732 45 H 0.059 0.941 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.402 -11.087 0.423 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.132 4.132 4 C -0.077 4.077 5 C -0.217 4.217 6 C -0.155 4.155 7 C -0.212 4.212 8 C 0.323 3.677 9 O -0.435 6.435 10 N -0.337 5.337 11 C -0.034 4.034 12 C -0.174 4.174 13 C 0.208 3.792 14 O -0.394 6.394 15 C -0.573 4.573 16 H 0.081 0.919 17 C -0.129 4.129 18 N -0.535 5.535 19 Si 0.730 3.270 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.200 1.200 23 C 0.001 3.999 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.231 0.769 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.337 -10.498 0.395 15.456 hybrid contribution 1.299 0.414 0.643 1.507 sum -10.039 -10.084 1.038 14.266 Atomic orbital electron populations 1.21761 0.96071 1.01177 1.01857 1.21683 0.95605 0.97064 1.02128 1.21441 0.92186 0.96322 1.03268 1.20759 0.96997 0.92731 0.97185 1.22252 1.02981 1.00247 0.96203 1.21742 1.01611 0.98996 0.93106 1.21830 1.01596 1.00717 0.97084 1.20082 0.80783 0.90701 0.76171 1.90640 1.54776 1.46665 1.51429 1.48566 1.05597 1.10149 1.69427 1.22809 0.89196 0.91516 0.99836 1.23315 0.94376 0.98948 1.00776 1.19459 0.87756 0.90849 0.81173 1.86146 1.32857 1.91103 1.29332 1.21478 0.91969 1.20574 1.23307 0.91897 1.24971 0.97587 0.94956 0.95425 1.69685 1.09469 1.34581 1.39799 0.86483 0.78503 0.81026 0.81027 1.20078 1.21112 1.19998 1.22038 0.93697 0.83367 1.00834 0.92831 0.93028 0.92819 0.91700 0.91776 0.91671 0.90984 0.92361 0.90547 0.91596 0.90823 0.90787 0.92666 0.92419 0.92408 0.91271 0.91886 0.91523 0.89449 0.76856 0.92187 0.92266 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.13 -1.25 5.24 -26.73 -0.14 -1.39 16 3 C -0.09 -1.22 3.33 -26.73 -0.09 -1.31 16 4 C -0.07 -1.03 0.30 -155.66 -0.05 -1.07 16 5 C -0.16 -1.97 7.78 37.16 0.29 -1.68 16 6 C -0.12 -1.45 4.62 -26.73 -0.12 -1.58 16 7 C -0.16 -2.05 9.35 37.16 0.35 -1.70 16 8 C 0.53 10.00 5.09 -10.98 -0.06 9.94 16 9 O -0.56 -12.23 16.32 5.55 0.09 -12.14 16 10 N -0.61 -11.88 3.32 -170.52 -0.57 -12.45 16 11 C 0.09 1.57 4.86 -2.54 -0.01 1.56 16 12 C -0.14 -2.86 5.47 -24.59 -0.13 -3.00 16 13 C 0.25 5.93 0.84 -89.93 -0.08 5.85 16 14 O -0.59 -14.62 13.06 -35.23 -0.46 -15.08 16 15 C -0.53 -13.94 8.23 -34.44 -0.28 -14.23 16 16 H 0.06 1.65 7.58 -52.49 -0.40 1.25 16 17 C 0.07 1.87 5.28 -17.82 -0.09 1.77 16 18 N -0.90 -22.72 10.67 55.43 0.59 -22.13 16 19 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 C 0.12 2.78 6.23 -3.06 -0.02 2.76 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.60 6.32 -51.93 -0.33 0.27 16 28 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.01 6.45 -51.93 -0.34 0.67 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.97 4.09 -51.93 -0.21 0.75 16 33 H 0.07 0.65 6.43 -51.92 -0.33 0.32 16 34 H 0.07 0.75 6.18 -51.93 -0.32 0.43 16 35 H 0.07 0.95 5.31 -51.93 -0.28 0.68 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.93 7.08 -51.93 -0.37 0.56 16 38 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 39 H 0.07 1.04 4.19 -51.93 -0.22 0.82 16 40 H 0.06 1.10 7.34 -51.93 -0.38 0.71 16 41 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 42 H 0.09 1.92 7.53 -51.93 -0.39 1.52 16 43 H 0.38 9.47 7.46 45.56 0.34 9.81 16 44 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 45 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 46 H 0.07 1.61 7.67 -51.93 -0.40 1.21 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -27.87 340.66 -7.10 -34.97 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -6.80 Total: 11.59 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -0.07 Total: -5.05 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.02 Total: -34.58 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.37 Total: -27.21 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.87 -7.10 -34.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.160 kcal (2) G-P(sol) polarization free energy of solvation -27.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds