Wall clock time and date at job start Tue Mar 31 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47208 * 2 1 4 4 C 1.52997 * 109.47404 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47359 * 299.99964 * 4 3 2 6 6 C 1.53002 * 109.46961 * 59.99965 * 4 3 2 7 7 C 1.52995 * 109.47135 * 64.10685 * 6 4 3 8 8 C 1.50699 * 109.47220 * 179.97438 * 4 3 2 9 9 O 1.21280 * 119.99920 * 354.91524 * 8 4 3 10 10 N 1.34776 * 120.00002 * 174.90776 * 8 4 3 11 11 C 1.47029 * 125.64852 * 353.96965 * 10 8 4 12 12 C 1.54335 * 107.26670 * 178.84523 * 11 10 8 13 13 C 1.55157 * 103.02133 * 338.14591 * 12 11 10 14 14 O 1.42905 * 111.00307 * 277.23161 * 13 12 11 15 15 C 1.50699 * 111.03939 * 153.39555 * 13 12 11 16 16 H 1.08005 * 119.99906 * 247.78650 * 15 13 12 17 17 C 1.37870 * 120.00175 * 67.78127 * 15 13 12 18 18 N 1.31520 * 119.99976 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00010 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47534 * 60.00195 * 19 17 15 21 21 H 1.48502 * 109.46924 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47100 * 299.99608 * 19 17 15 23 23 C 1.47430 * 125.65008 * 174.27683 * 10 8 4 24 24 H 1.09000 * 109.46728 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46928 * 300.00206 * 1 2 3 26 26 H 1.09001 * 109.47113 * 60.00059 * 1 2 3 27 27 H 1.08994 * 109.47389 * 239.99808 * 2 1 3 28 28 H 1.09004 * 109.46831 * 119.99484 * 2 1 3 29 29 H 1.09004 * 109.47112 * 59.99553 * 3 2 1 30 30 H 1.09001 * 109.47035 * 299.99989 * 3 2 1 31 31 H 1.09001 * 109.47329 * 287.09434 * 5 4 3 32 32 H 1.08994 * 109.47205 * 167.08821 * 5 4 3 33 33 H 1.09005 * 109.47059 * 47.09318 * 5 4 3 34 34 H 1.09000 * 109.47024 * 184.10895 * 6 4 3 35 35 H 1.09006 * 109.46802 * 304.10576 * 6 4 3 36 36 H 1.08993 * 109.47417 * 59.99935 * 7 6 4 37 37 H 1.09005 * 109.47223 * 180.02562 * 7 6 4 38 38 H 1.09000 * 109.47335 * 300.00019 * 7 6 4 39 39 H 1.08998 * 109.88494 * 298.39587 * 11 10 8 40 40 H 1.09008 * 109.87835 * 59.55758 * 11 10 8 41 41 H 1.08997 * 110.85418 * 219.67588 * 12 11 10 42 42 H 1.08995 * 110.66550 * 96.52486 * 12 11 10 43 43 H 0.96705 * 113.99864 * 292.19511 * 14 13 12 44 44 H 0.96998 * 120.00012 * 180.02562 * 18 17 15 45 45 H 1.09001 * 110.36380 * 322.93518 * 23 10 8 46 46 H 1.08996 * 110.36456 * 85.25770 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0796 0.7215 1.2502 6 6 4.0805 0.7211 -1.2483 7 6 3.6571 1.4993 -2.4957 8 6 4.0723 2.8634 0.0000 9 8 3.2881 3.7837 -0.0940 10 7 5.3930 3.1112 0.1040 11 6 6.4370 2.1053 0.3487 12 6 7.7918 2.8445 0.3597 13 6 7.4880 4.1430 -0.4335 14 8 7.5696 3.9139 -1.8417 15 6 8.4100 5.2598 -0.0166 16 1 8.0167 6.1162 0.5111 17 6 9.7555 5.1883 -0.3087 18 7 10.2344 4.1457 -0.9516 19 14 10.8983 6.5723 0.2087 20 1 10.8594 6.7206 1.6857 21 1 12.2843 6.2566 -0.2212 22 1 10.4600 7.8403 -0.4279 23 6 6.0294 4.4368 -0.0024 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9155 1.3507 2.1251 32 1 5.1451 0.5184 1.1434 33 1 3.5410 -0.2183 1.3724 34 1 5.1680 0.6569 -1.2118 35 1 3.6583 -0.2832 -1.2858 36 1 4.0792 2.5035 -2.4581 37 1 4.0204 0.9851 -3.3855 38 1 2.5696 1.5635 -2.5322 39 1 6.2682 1.6223 1.3111 40 1 6.4291 1.3615 -0.4482 41 1 8.5590 2.2559 -0.1432 42 1 8.0942 3.0781 1.3805 43 1 8.4637 3.7257 -2.1584 44 1 11.1811 4.0952 -1.1568 45 1 5.5250 5.0403 -0.7570 46 1 6.0139 4.9436 0.9625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853398.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:43 Heat of formation + Delta-G solvation = -102.225093 kcal Electronic energy + Delta-G solvation = -24413.517202 eV Core-core repulsion = 21109.531612 eV Total energy + Delta-G solvation = -3303.985590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.29766 -37.70515 -36.37112 -34.39256 -32.90593 -32.14523 -30.47528 -29.65384 -28.30940 -26.54043 -25.34411 -23.85332 -23.07824 -22.01025 -20.07515 -19.45289 -18.30027 -17.17744 -16.02486 -15.61656 -15.42305 -15.26293 -14.98048 -14.27098 -14.13059 -13.97344 -13.41477 -13.22872 -12.96426 -12.86317 -12.61181 -12.25595 -12.00373 -11.84910 -11.75608 -11.68130 -11.62343 -11.36047 -11.24225 -11.11193 -10.90929 -10.79493 -10.71885 -10.53346 -10.46985 -10.21933 -10.16800 -9.97239 -9.43039 -9.08474 -8.67862 -8.20914 -7.89739 -6.31131 -4.38737 3.16773 3.20452 3.25366 3.28681 3.61587 4.25133 4.69623 4.72952 4.87981 4.96303 5.09621 5.14241 5.22225 5.40378 5.48829 5.55906 5.62491 5.63363 5.69678 5.75170 5.80432 5.85433 5.90528 5.92142 5.97365 6.03916 6.06276 6.15489 6.18521 6.29814 6.38028 6.41212 6.43114 6.45923 6.62153 6.69459 6.89783 7.01429 7.29868 7.32323 7.72376 7.98939 8.22442 8.62604 8.73928 9.30275 9.47231 10.76451 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.037024 B = 0.004194 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.081408 B = 6674.883998 C = 6740.769897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.094 4.094 4 C -0.074 4.074 5 C -0.158 4.158 6 C -0.116 4.116 7 C -0.154 4.154 8 C 0.536 3.464 9 O -0.557 6.557 10 N -0.603 5.603 11 C 0.092 3.908 12 C -0.141 4.141 13 C 0.250 3.750 14 O -0.584 6.584 15 C -0.536 4.536 16 H 0.064 0.936 17 C 0.073 3.927 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.120 3.880 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.385 0.615 44 H 0.270 0.730 45 H 0.068 0.932 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.136 -10.615 2.084 14.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.132 4.132 4 C -0.077 4.077 5 C -0.215 4.215 6 C -0.153 4.153 7 C -0.211 4.211 8 C 0.324 3.676 9 O -0.436 6.436 10 N -0.335 5.335 11 C -0.030 4.030 12 C -0.180 4.180 13 C 0.210 3.790 14 O -0.394 6.394 15 C -0.574 4.574 16 H 0.082 0.918 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.731 3.269 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.002 4.002 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.237 0.763 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.092 -10.108 1.993 15.138 hybrid contribution 1.441 0.595 0.300 1.587 sum -9.651 -9.514 2.293 13.744 Atomic orbital electron populations 1.21761 0.96069 1.01165 1.01855 1.21707 0.95597 0.97109 1.02146 1.21430 0.92241 0.96287 1.03256 1.20759 0.96939 0.92800 0.97190 1.22245 1.02502 1.00456 0.96264 1.21714 1.01725 0.98832 0.93066 1.21816 1.01256 1.01014 0.97061 1.20057 0.80882 0.90661 0.75984 1.90635 1.54766 1.46651 1.51563 1.48517 1.05240 1.10215 1.69554 1.22525 0.89370 0.91887 0.99257 1.23222 0.93443 0.99426 1.01880 1.19553 0.88875 0.90980 0.79619 1.86099 1.35839 1.93679 1.23772 1.21462 0.92571 1.05555 1.37836 0.91754 1.24981 0.98025 0.95920 0.94031 1.69554 1.14927 1.28803 1.40508 0.86459 0.79248 0.82101 0.79085 1.20048 1.21103 1.19990 1.22355 0.93970 0.83611 1.00257 0.93035 0.92857 0.92796 0.91652 0.91739 0.91703 0.90957 0.92442 0.90748 0.91447 0.90768 0.91014 0.92209 0.92724 0.92617 0.92176 0.91951 0.89977 0.91516 0.76317 0.92038 0.91368 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.13 -1.28 5.27 -26.73 -0.14 -1.43 16 3 C -0.09 -1.24 3.31 -26.73 -0.09 -1.33 16 4 C -0.07 -1.05 0.30 -155.66 -0.05 -1.10 16 5 C -0.16 -1.92 7.60 37.16 0.28 -1.63 16 6 C -0.12 -1.53 4.58 -26.73 -0.12 -1.65 16 7 C -0.15 -2.22 9.34 37.15 0.35 -1.87 16 8 C 0.54 10.16 5.08 -10.99 -0.06 10.10 16 9 O -0.56 -12.37 16.29 5.56 0.09 -12.28 16 10 N -0.60 -11.91 3.32 -170.50 -0.57 -12.47 16 11 C 0.09 1.63 5.01 -3.05 -0.02 1.62 16 12 C -0.14 -2.97 5.64 -24.89 -0.14 -3.11 16 13 C 0.25 6.00 0.89 -89.62 -0.08 5.92 16 14 O -0.58 -14.82 13.18 -35.23 -0.46 -15.29 16 15 C -0.54 -13.87 8.25 -34.44 -0.28 -14.15 16 16 H 0.06 1.66 7.77 -52.48 -0.41 1.25 16 17 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 18 N -0.90 -22.86 10.79 55.43 0.60 -22.27 16 19 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 21 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 C 0.12 2.70 6.06 -2.53 -0.02 2.69 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.63 6.34 -51.93 -0.33 0.30 16 28 H 0.06 0.60 6.17 -51.93 -0.32 0.28 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.04 6.44 -51.93 -0.33 0.71 16 31 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.07 0.89 4.82 -51.93 -0.25 0.64 16 33 H 0.07 0.67 5.84 -51.93 -0.30 0.36 16 34 H 0.07 1.04 5.22 -51.93 -0.27 0.77 16 35 H 0.07 0.78 6.22 -51.93 -0.32 0.45 16 36 H 0.06 1.07 7.10 -51.93 -0.37 0.70 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.74 6.54 -51.93 -0.34 0.40 16 39 H 0.06 0.92 5.85 -51.93 -0.30 0.62 16 40 H 0.06 1.05 5.52 -51.92 -0.29 0.76 16 41 H 0.08 1.81 7.85 -51.93 -0.41 1.40 16 42 H 0.07 1.41 8.03 -51.93 -0.42 1.00 16 43 H 0.38 9.88 6.93 45.56 0.32 10.19 16 44 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 45 H 0.07 1.65 8.10 -51.93 -0.42 1.23 16 46 H 0.07 1.50 8.01 -51.93 -0.42 1.09 16 LS Contribution 340.83 15.07 5.14 5.14 Total: -1.00 -27.86 340.83 -7.16 -35.03 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -6.85 Total: 12.30 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -0.09 Total: -5.19 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.03 Total: -34.74 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.37 Total: -27.56 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.86 -7.16 -35.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853398.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.198 kcal (2) G-P(sol) polarization free energy of solvation -27.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds