Wall clock time and date at job start Tue Mar 31 2020 05:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48505 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46990 * 299.99984 * 3 2 1 6 6 H 1.48501 * 109.46871 * 60.00244 * 3 2 1 7 7 C 1.37877 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00178 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99977 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.50695 * 299.92519 * 9 7 2 11 11 C 1.53124 * 109.50375 * 60.00305 * 9 7 2 12 12 C 1.53117 * 109.16496 * 177.63506 * 11 9 7 13 13 C 1.53041 * 109.27373 * 302.34769 * 12 11 9 14 14 N 1.46843 * 109.52800 * 59.17810 * 13 12 11 15 15 C 1.46893 * 111.00203 * 174.15654 * 14 13 12 16 16 C 1.53007 * 109.47016 * 66.04630 * 15 14 13 17 17 O 1.42901 * 109.46893 * 64.99974 * 16 15 14 18 18 C 1.42902 * 113.99762 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47064 * 179.97438 * 18 17 16 20 20 H 1.08999 * 109.98878 * 306.08956 * 19 18 17 21 21 C 1.54098 * 109.87723 * 185.00396 * 19 18 17 22 22 C 1.54813 * 104.30472 * 238.48010 * 21 19 18 23 23 C 1.55227 * 101.98357 * 339.26359 * 22 21 19 24 24 O 1.43744 * 109.87631 * 67.17260 * 19 18 17 25 25 C 1.46849 * 111.19687 * 298.25631 * 14 13 12 26 26 H 0.96998 * 120.00217 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.51914 * 57.72341 * 11 9 7 28 28 H 1.08998 * 109.52048 * 297.54184 * 11 9 7 29 29 H 1.08992 * 109.50424 * 182.40648 * 12 11 9 30 30 H 1.09001 * 109.53012 * 62.29969 * 12 11 9 31 31 H 1.09000 * 109.46319 * 299.15799 * 13 12 11 32 32 H 1.09004 * 109.45465 * 179.19401 * 13 12 11 33 33 H 1.08999 * 109.47367 * 306.04969 * 15 14 13 34 34 H 1.09001 * 109.47361 * 186.04514 * 15 14 13 35 35 H 1.09000 * 109.46695 * 305.00309 * 16 15 14 36 36 H 1.09000 * 109.47043 * 184.99857 * 16 15 14 37 37 H 1.09000 * 109.46431 * 60.00251 * 18 17 16 38 38 H 1.08996 * 109.47430 * 300.00322 * 18 17 16 39 39 H 1.09002 * 110.48969 * 357.22346 * 21 19 18 40 40 H 1.09002 * 110.48612 * 119.74013 * 21 19 18 41 41 H 1.08999 * 110.90868 * 97.38351 * 22 21 19 42 42 H 1.09003 * 110.91016 * 220.99202 * 22 21 19 43 43 H 1.09002 * 110.51777 * 278.38206 * 23 22 21 44 44 H 1.09000 * 110.77540 * 155.50397 * 23 22 21 45 45 H 1.08998 * 109.46289 * 181.75406 * 25 14 13 46 46 H 1.08996 * 109.46210 * 301.72547 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6255 -2.5583 0.8901 11 6 0.3700 -2.5808 -1.2502 12 6 -0.3465 -3.9339 -1.2726 13 6 0.6930 -5.0566 -1.2408 14 7 1.5097 -4.9350 -0.0264 15 6 2.4266 -6.0748 0.1077 16 6 3.4531 -6.0398 -1.0264 17 8 4.2729 -4.8772 -0.8910 18 6 5.2709 -4.7485 -1.9057 19 6 6.0841 -3.4755 -1.6627 20 1 5.4173 -2.6169 -1.5834 21 6 7.0795 -3.2608 -2.8192 22 6 8.4659 -3.2351 -2.1308 23 6 8.0908 -2.8955 -0.6633 24 8 6.8535 -3.6099 -0.4559 25 6 2.2442 -3.6635 -0.0056 26 1 -0.4850 0.8400 -0.0004 27 1 0.9909 -2.4826 -2.1407 28 1 -0.3675 -1.7785 -1.2291 29 1 -0.9422 -4.0152 -2.1817 30 1 -0.9975 -4.0159 -0.4022 31 1 1.3346 -4.9825 -2.1188 32 1 0.1857 -6.0213 -1.2421 33 1 1.8602 -7.0047 0.0565 34 1 2.9420 -6.0156 1.0663 35 1 2.9347 -6.0094 -1.9847 36 1 4.0773 -6.9321 -0.9790 37 1 4.7906 -4.6915 -2.8825 38 1 5.9328 -5.6140 -1.8762 39 1 7.0219 -4.0851 -3.5302 40 1 6.8843 -2.3123 -3.3195 41 1 8.9492 -4.2101 -2.1928 42 1 9.0999 -2.4601 -2.5616 43 1 7.9388 -1.8225 -0.5463 44 1 8.8587 -3.2504 0.0241 45 1 2.8635 -3.6164 0.8901 46 1 2.8785 -3.5960 -0.8895 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595613325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:17 Heat of formation + Delta-G solvation = -94.858843 kcal Electronic energy + Delta-G solvation = -24081.250748 eV Core-core repulsion = 20777.584583 eV Total energy + Delta-G solvation = -3303.666165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.54648 -38.67948 -36.77679 -33.77467 -32.22156 -31.86507 -30.45919 -29.71345 -27.92504 -25.19949 -24.78780 -23.38792 -22.10820 -21.49781 -20.99410 -20.59774 -18.40079 -16.93092 -16.52550 -16.09690 -15.81746 -15.71132 -15.06184 -14.64846 -14.38186 -13.98044 -13.78904 -13.68726 -13.16761 -12.71259 -12.56990 -12.22378 -11.94831 -11.87919 -11.71896 -11.57692 -11.40697 -11.22458 -11.17955 -10.95897 -10.88942 -10.72004 -10.53061 -10.49901 -10.02653 -9.76067 -9.55381 -9.40153 -9.12141 -8.82706 -8.53877 -8.18545 -7.34977 -5.85924 -3.90173 3.35462 3.43295 3.47652 3.74947 3.92592 4.46215 4.50691 4.70045 4.77858 4.87167 5.08907 5.21721 5.27315 5.37867 5.41137 5.44111 5.48659 5.53484 5.55859 5.58919 5.66903 5.71382 5.80551 5.90052 5.92149 5.95561 6.11522 6.18133 6.28513 6.41365 6.70982 6.79692 6.87553 6.96637 7.01287 7.28349 7.36206 7.45110 7.55309 7.84714 7.90682 8.02714 8.26147 8.33235 8.65755 9.15133 9.73016 11.20377 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.006740 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.562197 B = 4153.098586 C = 6094.613060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.503 4.503 8 H 0.054 0.946 9 C 0.051 3.949 10 H 0.029 0.971 11 C -0.109 4.109 12 C -0.117 4.117 13 C 0.061 3.939 14 N -0.536 5.536 15 C 0.058 3.942 16 C 0.024 3.976 17 O -0.356 6.356 18 C 0.062 3.938 19 C 0.078 3.922 20 H 0.085 0.915 21 C -0.150 4.150 22 C -0.154 4.154 23 C 0.043 3.957 24 O -0.361 6.361 25 C 0.068 3.932 26 H 0.257 0.743 27 H 0.027 0.973 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.021 0.979 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.055 0.945 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.904 -10.587 -6.389 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.714 3.286 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.542 4.542 8 H 0.072 0.928 9 C 0.032 3.968 10 H 0.047 0.953 11 C -0.147 4.147 12 C -0.155 4.155 13 C -0.067 4.067 14 N -0.259 5.259 15 C -0.071 4.071 16 C -0.054 4.054 17 O -0.274 6.274 18 C -0.015 4.015 19 C 0.020 3.980 20 H 0.103 0.897 21 C -0.188 4.188 22 C -0.192 4.192 23 C -0.034 4.034 24 O -0.280 6.280 25 C -0.058 4.058 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.074 0.926 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.338 -10.441 -5.637 16.412 hybrid contribution 1.144 0.819 -1.231 1.869 sum 12.482 -9.622 -6.868 17.192 Atomic orbital electron populations 1.69906 1.05784 1.25902 1.51497 1.24932 0.94771 0.98769 0.95527 0.86638 0.80237 0.84310 0.77412 1.19877 1.21280 1.21130 1.21216 0.92901 0.90633 1.49448 0.92786 1.18724 0.92786 0.90927 0.94369 0.95321 1.21631 0.99938 0.94536 0.98576 1.21668 0.97170 0.96697 0.99951 1.22036 0.95485 0.98394 0.90791 1.62174 1.23530 1.03057 1.37162 1.22294 0.91948 0.95260 0.97625 1.23324 0.93427 0.88075 1.00622 1.88315 1.46037 1.42979 1.50105 1.22630 0.90264 0.96832 0.91733 1.22785 0.92816 0.98060 0.84324 0.89670 1.22939 0.94389 1.03227 0.98237 1.23162 0.97129 1.02537 0.96370 1.23591 0.87102 0.97077 0.95668 1.88994 1.29582 1.74015 1.35387 1.22481 0.95557 0.86991 1.00763 0.93327 0.95426 0.89322 0.93826 0.92203 0.96050 0.92848 0.90330 0.90289 0.93635 0.93966 0.92648 0.93413 0.90522 0.90068 0.90708 0.90250 0.92066 0.89182 0.92613 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 11.35 55.43 0.63 -25.53 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.50 -14.31 8.57 -34.44 -0.29 -14.61 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.05 1.33 2.26 -91.69 -0.21 1.13 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.11 -2.67 5.02 -26.61 -0.13 -2.81 16 12 C -0.12 -2.38 6.09 -26.65 -0.16 -2.55 16 13 C 0.06 1.11 5.06 -3.83 -0.02 1.09 16 14 N -0.54 -10.49 4.86 -234.67 -1.14 -11.63 16 15 C 0.06 0.91 5.93 -3.82 -0.02 0.89 16 16 C 0.02 0.36 5.76 37.16 0.21 0.57 16 17 O -0.36 -6.19 6.78 -36.85 -0.25 -6.44 16 18 C 0.06 0.89 5.39 37.16 0.20 1.09 16 19 C 0.08 1.14 3.71 -26.16 -0.10 1.04 16 20 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 21 C -0.15 -1.60 6.63 -25.20 -0.17 -1.77 16 22 C -0.15 -1.45 7.17 -24.60 -0.18 -1.63 16 23 C 0.04 0.50 7.72 38.34 0.30 0.79 16 24 O -0.36 -5.78 11.18 -36.85 -0.41 -6.19 16 25 C 0.07 1.56 3.45 -3.83 -0.01 1.54 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.09 2.42 6.15 -51.93 -0.32 2.11 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.02 0.39 6.65 -51.93 -0.35 0.04 16 32 H 0.05 0.84 8.06 -51.93 -0.42 0.42 16 33 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.05 0.66 6.46 -51.93 -0.34 0.33 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.70 7.70 -51.93 -0.40 0.30 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 1.35 8.12 -51.93 -0.42 0.93 16 46 H 0.05 1.18 5.58 -51.93 -0.29 0.89 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -31.19 349.91 -10.01 -41.20 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -8.41 Total: 0.10 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -0.68 Total: -13.58 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.51 Total: -37.16 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.66 Total: -12.64 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.19 -10.01 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.660 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds