Wall clock time and date at job start Tue Mar 31 2020 05:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48505 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46990 * 299.99984 * 3 2 1 6 6 H 1.48501 * 109.46871 * 60.00244 * 3 2 1 7 7 C 1.37877 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00178 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99977 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.50695 * 299.92519 * 9 7 2 11 11 C 1.53124 * 109.50375 * 60.00305 * 9 7 2 12 12 C 1.53117 * 109.16496 * 177.63506 * 11 9 7 13 13 C 1.53041 * 109.27373 * 302.34769 * 12 11 9 14 14 N 1.46843 * 109.52800 * 59.17810 * 13 12 11 15 15 C 1.46893 * 111.00203 * 174.15654 * 14 13 12 16 16 C 1.53007 * 109.47016 * 66.04630 * 15 14 13 17 17 O 1.42901 * 109.46893 * 64.99974 * 16 15 14 18 18 C 1.42902 * 113.99762 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47064 * 179.97438 * 18 17 16 20 20 H 1.08999 * 109.98878 * 306.08956 * 19 18 17 21 21 C 1.54098 * 109.87723 * 185.00396 * 19 18 17 22 22 C 1.54813 * 104.30472 * 238.48010 * 21 19 18 23 23 C 1.55227 * 101.98357 * 339.26359 * 22 21 19 24 24 O 1.43744 * 109.87631 * 67.17260 * 19 18 17 25 25 C 1.46849 * 111.19687 * 298.25631 * 14 13 12 26 26 H 0.96998 * 120.00217 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.51914 * 57.72341 * 11 9 7 28 28 H 1.08998 * 109.52048 * 297.54184 * 11 9 7 29 29 H 1.08992 * 109.50424 * 182.40648 * 12 11 9 30 30 H 1.09001 * 109.53012 * 62.29969 * 12 11 9 31 31 H 1.09000 * 109.46319 * 299.15799 * 13 12 11 32 32 H 1.09004 * 109.45465 * 179.19401 * 13 12 11 33 33 H 1.08999 * 109.47367 * 306.04969 * 15 14 13 34 34 H 1.09001 * 109.47361 * 186.04514 * 15 14 13 35 35 H 1.09000 * 109.46695 * 305.00309 * 16 15 14 36 36 H 1.09000 * 109.47043 * 184.99857 * 16 15 14 37 37 H 1.09000 * 109.46431 * 60.00251 * 18 17 16 38 38 H 1.08996 * 109.47430 * 300.00322 * 18 17 16 39 39 H 1.09002 * 110.48969 * 357.22346 * 21 19 18 40 40 H 1.09002 * 110.48612 * 119.74013 * 21 19 18 41 41 H 1.08999 * 110.90868 * 97.38351 * 22 21 19 42 42 H 1.09003 * 110.91016 * 220.99202 * 22 21 19 43 43 H 1.09002 * 110.51777 * 278.38206 * 23 22 21 44 44 H 1.09000 * 110.77540 * 155.50397 * 23 22 21 45 45 H 1.08998 * 109.46289 * 181.75406 * 25 14 13 46 46 H 1.08996 * 109.46210 * 301.72547 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6255 -2.5583 0.8901 11 6 0.3700 -2.5808 -1.2502 12 6 -0.3465 -3.9339 -1.2726 13 6 0.6930 -5.0566 -1.2408 14 7 1.5097 -4.9350 -0.0264 15 6 2.4266 -6.0748 0.1077 16 6 3.4531 -6.0398 -1.0264 17 8 4.2729 -4.8772 -0.8910 18 6 5.2709 -4.7485 -1.9057 19 6 6.0841 -3.4755 -1.6627 20 1 5.4173 -2.6169 -1.5834 21 6 7.0795 -3.2608 -2.8192 22 6 8.4659 -3.2351 -2.1308 23 6 8.0908 -2.8955 -0.6633 24 8 6.8535 -3.6099 -0.4559 25 6 2.2442 -3.6635 -0.0056 26 1 -0.4850 0.8400 -0.0004 27 1 0.9909 -2.4826 -2.1407 28 1 -0.3675 -1.7785 -1.2291 29 1 -0.9422 -4.0152 -2.1817 30 1 -0.9975 -4.0159 -0.4022 31 1 1.3346 -4.9825 -2.1188 32 1 0.1857 -6.0213 -1.2421 33 1 1.8602 -7.0047 0.0565 34 1 2.9420 -6.0156 1.0663 35 1 2.9347 -6.0094 -1.9847 36 1 4.0773 -6.9321 -0.9790 37 1 4.7906 -4.6915 -2.8825 38 1 5.9328 -5.6140 -1.8762 39 1 7.0219 -4.0851 -3.5302 40 1 6.8843 -2.3123 -3.3195 41 1 8.9492 -4.2101 -2.1928 42 1 9.0999 -2.4601 -2.5616 43 1 7.9388 -1.8225 -0.5463 44 1 8.8587 -3.2504 0.0241 45 1 2.8635 -3.6164 0.8901 46 1 2.8785 -3.5960 -0.8895 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595613325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:16 Heat of formation + Delta-G solvation = -115.554564 kcal Electronic energy + Delta-G solvation = -24082.148182 eV Core-core repulsion = 20777.584583 eV Total energy + Delta-G solvation = -3304.563599 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.66692 -40.08211 -38.17413 -35.63273 -33.72634 -33.13270 -31.61649 -31.55817 -29.31364 -26.90725 -26.20457 -24.87625 -23.29222 -22.94890 -22.38991 -21.85891 -20.16851 -18.45068 -18.02736 -17.44980 -16.96997 -16.85489 -16.58761 -16.22023 -15.91326 -15.57010 -15.09836 -14.83836 -14.55010 -14.41628 -14.07182 -13.94362 -13.31306 -13.18374 -13.10168 -12.88137 -12.77213 -12.67708 -12.51862 -12.43454 -12.30337 -12.12407 -12.04211 -11.77260 -11.67146 -11.56997 -11.34385 -10.80370 -10.67794 -10.61835 -10.45137 -10.29619 -8.89777 -8.06490 -6.19517 1.36649 1.38126 1.50292 2.42581 2.67461 2.94073 3.19448 3.28164 3.60652 3.83712 3.93496 4.06803 4.14766 4.20627 4.23522 4.30039 4.36204 4.40879 4.44693 4.47327 4.54782 4.63337 4.67587 4.77318 4.77876 4.86782 4.90188 4.95521 5.01097 5.03549 5.03569 5.13312 5.16333 5.23386 5.34483 5.46990 5.57287 5.65832 5.94856 6.01050 6.20147 6.27641 6.32296 6.49351 6.56015 6.93366 7.47378 8.98480 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.006740 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.562197 B = 4153.098586 C = 6094.613060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.279 1.279 7 C -0.527 4.527 8 H 0.042 0.958 9 C 0.049 3.951 10 H -0.014 1.014 11 C -0.100 4.100 12 C -0.112 4.112 13 C 0.066 3.934 14 N -0.551 5.551 15 C 0.056 3.944 16 C 0.025 3.975 17 O -0.393 6.393 18 C 0.062 3.938 19 C 0.071 3.929 20 H 0.043 0.957 21 C -0.144 4.144 22 C -0.142 4.142 23 C 0.030 3.970 24 O -0.395 6.395 25 C 0.094 3.906 26 H 0.260 0.740 27 H 0.020 0.980 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.027 0.973 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.053 0.947 44 H 0.107 0.893 45 H 0.029 0.971 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.191 -12.205 -8.058 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.565 4.565 8 H 0.060 0.940 9 C 0.030 3.970 10 H 0.005 0.995 11 C -0.138 4.138 12 C -0.150 4.150 13 C -0.062 4.062 14 N -0.275 5.275 15 C -0.072 4.072 16 C -0.053 4.053 17 O -0.313 6.313 18 C -0.014 4.014 19 C 0.013 3.987 20 H 0.061 0.939 21 C -0.182 4.182 22 C -0.180 4.180 23 C -0.046 4.046 24 O -0.315 6.315 25 C -0.034 4.034 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.110 0.890 33 H 0.133 0.867 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.119 0.881 43 H 0.071 0.929 44 H 0.125 0.875 45 H 0.047 0.953 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.632 -12.075 -7.313 18.943 hybrid contribution 0.734 1.318 -0.647 1.641 sum 13.366 -10.757 -7.960 18.914 Atomic orbital electron populations 1.70041 1.07052 1.26853 1.51672 1.25691 0.95661 1.02119 0.94968 0.85632 0.78982 0.80009 0.77819 1.19555 1.20135 1.20515 1.21485 0.92560 0.92354 1.50138 0.93954 1.18670 0.93107 0.91892 0.93364 0.99548 1.21411 0.98885 0.96396 0.97127 1.21598 0.97613 0.94953 1.00808 1.22046 0.94779 0.99065 0.90283 1.62051 1.24430 1.02649 1.38378 1.22410 0.92112 0.94882 0.97754 1.23358 0.93445 0.88388 1.00118 1.88251 1.47131 1.44471 1.51474 1.22765 0.89978 0.97201 0.91495 1.22831 0.93323 0.96882 0.85682 0.93857 1.22937 0.93875 1.04271 0.97119 1.23149 0.96645 1.04074 0.94121 1.23850 0.86149 0.96487 0.98136 1.88950 1.31316 1.74565 1.36684 1.21988 0.94190 0.87895 0.99277 0.93109 0.96114 0.92573 0.91086 0.93329 0.95465 0.88963 0.86724 0.91371 0.92963 0.91118 0.91363 0.91555 0.88378 0.89757 0.89261 0.88053 0.92856 0.87529 0.95281 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.55 11.35 21.45 0.24 -55.31 16 2 C 0.01 0.81 5.30 84.66 0.45 1.26 16 3 Si 0.95 45.91 29.54 68.60 2.03 47.94 16 4 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.53 -31.43 8.57 25.60 0.22 -31.21 16 8 H 0.04 2.55 7.74 -2.91 -0.02 2.53 16 9 C 0.05 2.68 2.26 -11.48 -0.03 2.65 16 10 H -0.01 -0.86 8.14 -2.39 -0.02 -0.87 16 11 C -0.10 -5.06 5.02 30.67 0.15 -4.90 16 12 C -0.11 -4.47 6.09 30.65 0.19 -4.29 16 13 C 0.07 2.25 5.06 86.33 0.44 2.68 16 14 N -0.55 -21.20 4.86 -896.36 -4.35 -25.56 16 15 C 0.06 1.67 5.93 86.31 0.51 2.18 16 16 C 0.02 0.67 5.76 71.98 0.41 1.09 16 17 O -0.39 -13.60 6.78 -147.43 -1.00 -14.60 16 18 C 0.06 1.71 5.39 71.98 0.39 2.10 16 19 C 0.07 2.09 3.71 30.97 0.11 2.21 16 20 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 21 C -0.14 -2.85 6.63 31.58 0.21 -2.64 16 22 C -0.14 -2.35 7.17 31.98 0.23 -2.12 16 23 C 0.03 0.69 7.72 72.75 0.56 1.25 16 24 O -0.40 -12.89 11.18 -147.43 -1.65 -14.54 16 25 C 0.09 4.43 3.45 86.33 0.30 4.73 16 26 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 27 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.06 3.19 6.15 -2.39 -0.01 3.17 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.03 0.91 6.65 -2.39 -0.02 0.90 16 32 H 0.09 2.50 8.06 -2.39 -0.02 2.49 16 33 H 0.11 2.58 8.06 -2.39 -0.02 2.56 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.05 1.36 6.46 -2.39 -0.02 1.34 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.10 1.52 7.70 -2.39 -0.02 1.50 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.03 1.48 8.12 -2.39 -0.02 1.46 16 46 H 0.05 2.30 5.58 -2.39 -0.01 2.29 16 Total: -1.00 -71.59 349.91 0.33 -71.25 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.92 Total: 15.83 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: 4.15 Total: -25.02 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -4.11 Total: -80.86 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -2.65 Total: -29.14 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -71.59 0.33 -71.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595613325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.301 kcal (2) G-P(sol) polarization free energy of solvation -71.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds