Wall clock time and date at job start Tue Mar 31 2020 05:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00338 * 2 1 4 4 H 1.48504 * 109.46766 * 270.00014 * 3 2 1 5 5 H 1.48504 * 109.46938 * 29.99561 * 3 2 1 6 6 H 1.48496 * 109.47417 * 149.99686 * 3 2 1 7 7 C 1.37877 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99943 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99871 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.51117 * 60.07754 * 9 7 2 11 11 C 1.53117 * 109.50203 * 299.99389 * 9 7 2 12 12 C 1.53120 * 109.16447 * 182.36845 * 11 9 7 13 13 C 1.53039 * 109.27847 * 57.65474 * 12 11 9 14 14 N 1.46845 * 109.52244 * 300.82536 * 13 12 11 15 15 C 1.46904 * 110.99822 * 185.83362 * 14 13 12 16 16 C 1.53006 * 109.46673 * 66.04689 * 15 14 13 17 17 O 1.42895 * 109.47036 * 65.00189 * 16 15 14 18 18 C 1.42901 * 113.99948 * 179.97438 * 17 16 15 19 19 H 1.09000 * 109.48188 * 55.02385 * 18 17 16 20 20 C 1.53091 * 109.48335 * 175.05500 * 18 17 16 21 21 C 1.53175 * 109.16753 * 177.59023 * 20 18 17 22 22 C 1.53173 * 109.03578 * 303.02148 * 21 20 18 23 23 C 1.53090 * 109.16307 * 56.97820 * 22 21 20 24 24 O 1.42899 * 109.41600 * 302.38896 * 23 22 21 25 25 C 1.46853 * 111.20078 * 61.74175 * 14 13 12 26 26 H 0.97000 * 119.99590 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.51971 * 62.46532 * 11 9 7 28 28 H 1.09001 * 109.57890 * 302.30779 * 11 9 7 29 29 H 1.09002 * 109.50373 * 297.71761 * 12 11 9 30 30 H 1.08997 * 109.53770 * 177.61864 * 12 11 9 31 31 H 1.08999 * 109.46333 * 180.80795 * 13 12 11 32 32 H 1.09004 * 109.44820 * 60.83470 * 13 12 11 33 33 H 1.08992 * 109.47335 * 306.04927 * 15 14 13 34 34 H 1.08997 * 109.46819 * 186.04562 * 15 14 13 35 35 H 1.09001 * 109.47002 * 184.99666 * 16 15 14 36 36 H 1.08993 * 109.46955 * 305.00103 * 16 15 14 37 37 H 1.09004 * 109.52556 * 297.50060 * 20 18 17 38 38 H 1.09004 * 109.52289 * 57.68126 * 20 18 17 39 39 H 1.09001 * 109.54716 * 183.15228 * 21 20 18 40 40 H 1.09002 * 109.61232 * 62.92975 * 21 20 18 41 41 H 1.09000 * 109.52240 * 297.07235 * 22 21 20 42 42 H 1.08998 * 109.57405 * 176.91625 * 22 21 20 43 43 H 1.08999 * 109.47940 * 182.40744 * 23 22 21 44 44 H 1.08997 * 109.49340 * 62.38144 * 23 22 21 45 45 H 1.08999 * 109.45812 * 58.26887 * 25 14 13 46 46 H 1.08997 * 109.46251 * 178.24205 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 1 3.8752 -0.6814 0.8916 11 6 4.0231 -0.4728 -1.2489 12 6 5.5531 -0.5289 -1.2707 13 6 6.0057 -1.9905 -1.2377 14 7 5.4915 -2.6361 -0.0231 15 6 6.0201 -4.0000 0.1120 16 6 7.5315 -3.9406 0.3432 17 8 7.7971 -3.3064 1.5959 18 6 9.1870 -3.2000 1.9103 19 1 9.7057 -2.6915 1.0976 20 6 9.3580 -2.4005 3.2046 21 6 10.8451 -2.3423 3.5670 22 6 11.3856 -3.7702 3.6901 23 6 11.1364 -4.5168 2.3770 24 8 9.7380 -4.5072 2.0832 25 6 4.0232 -2.6364 -0.0028 26 1 -0.4849 0.8401 -0.0004 27 1 3.6970 0.5671 -1.2285 28 1 3.6280 -0.9610 -2.1397 29 1 5.9489 -0.0057 -0.4002 30 1 5.9224 -0.0540 -2.1796 31 1 7.0948 -2.0335 -1.2387 32 1 5.6209 -2.5094 -2.1156 33 1 5.8138 -4.5616 -0.7990 34 1 5.5421 -4.4926 0.9587 35 1 7.9372 -4.9522 0.3550 36 1 7.9996 -3.3706 -0.4592 37 1 8.9783 -1.3889 3.0608 38 1 8.8059 -2.8868 4.0088 39 1 10.9689 -1.8224 4.5170 40 1 11.3913 -1.8116 2.7871 41 1 10.8745 -4.2842 4.5040 42 1 12.4559 -3.7392 3.8940 43 1 11.4805 -5.5465 2.4734 44 1 11.6807 -4.0257 1.5704 45 1 3.6479 -3.1525 -0.8865 46 1 3.6725 -3.1486 0.8931 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595620786.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:39 Heat of formation + Delta-G solvation = -100.394295 kcal Electronic energy + Delta-G solvation = -23376.587808 eV Core-core repulsion = 20072.681607 eV Total energy + Delta-G solvation = -3303.906201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.81306 -38.55642 -36.85164 -33.93035 -33.91633 -32.11878 -30.67111 -30.23765 -28.46004 -24.98303 -24.90946 -23.62076 -23.36636 -21.80164 -20.72533 -20.32358 -18.81802 -17.48249 -16.93397 -16.63203 -16.02231 -15.59106 -15.08881 -14.71312 -14.48698 -14.21169 -14.13139 -13.60251 -13.33248 -13.19238 -12.98808 -12.96150 -12.80365 -12.25629 -12.11929 -11.90767 -11.42828 -11.41775 -11.24552 -11.09579 -10.99239 -10.93711 -10.72445 -10.41995 -10.00841 -9.89399 -9.77246 -9.64400 -9.59388 -9.02746 -8.86100 -8.45888 -7.70114 -6.01607 -4.00132 3.23979 3.32741 3.43986 3.48523 3.84688 4.39962 4.47949 4.48928 4.53739 4.64329 4.78179 4.83113 5.08652 5.15947 5.28287 5.30083 5.32754 5.42376 5.44426 5.50580 5.57520 5.60496 5.64236 5.69906 5.78201 5.84985 5.87806 6.00441 6.03826 6.10438 6.23054 6.35248 6.39148 6.54079 6.67871 6.87029 6.90479 6.95413 7.24546 7.28070 7.48746 7.71050 7.73776 7.94139 8.58458 9.01995 9.61665 11.11788 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026807 B = 0.003603 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.239799 B = 7770.099748 C = 8119.694727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.512 4.512 8 H 0.072 0.928 9 C 0.020 3.980 10 H 0.036 0.964 11 C -0.122 4.122 12 C -0.118 4.118 13 C 0.061 3.939 14 N -0.533 5.533 15 C 0.056 3.944 16 C 0.069 3.931 17 O -0.342 6.342 18 C 0.254 3.746 19 H 0.048 0.952 20 C -0.140 4.140 21 C -0.120 4.120 22 C -0.160 4.160 23 C 0.072 3.928 24 O -0.408 6.408 25 C 0.078 3.922 26 H 0.263 0.737 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.026 0.974 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.049 0.951 45 H 0.025 0.975 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.256 -6.940 2.740 25.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.188 1.188 7 C -0.551 4.551 8 H 0.090 0.910 9 C 0.001 3.999 10 H 0.054 0.946 11 C -0.159 4.159 12 C -0.156 4.156 13 C -0.067 4.067 14 N -0.258 5.258 15 C -0.073 4.073 16 C -0.008 4.008 17 O -0.261 6.261 18 C 0.158 3.842 19 H 0.065 0.935 20 C -0.178 4.178 21 C -0.158 4.158 22 C -0.197 4.197 23 C -0.004 4.004 24 O -0.330 6.330 25 C -0.049 4.049 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.112 0.888 44 H 0.067 0.933 45 H 0.043 0.957 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 23.980 -6.656 3.246 25.097 hybrid contribution 0.410 0.621 -0.953 1.209 sum 24.389 -6.035 2.292 25.229 Atomic orbital electron populations 1.69904 1.06311 1.26864 1.51168 1.24984 0.94658 0.99046 0.94470 0.86820 0.80068 0.83453 0.77785 1.20794 1.22685 1.18760 1.21021 0.88869 0.94457 1.50722 0.90984 1.19153 0.95819 0.91228 0.93688 0.94594 1.22017 0.92627 1.00159 1.01119 1.21636 0.98096 0.95223 1.00675 1.22036 0.98461 0.95634 0.90591 1.61962 1.10158 1.16223 1.37481 1.22093 0.93247 0.91130 1.00794 1.22585 0.96477 0.96448 0.85267 1.88202 1.20609 1.78731 1.38519 1.22935 0.82559 0.83110 0.95580 0.93459 1.21990 0.96718 1.01513 0.97582 1.21588 0.95138 0.96692 1.02354 1.22243 1.01685 0.96659 0.99161 1.22460 0.81160 1.01330 0.95480 1.87814 1.23573 1.30228 1.91348 1.22083 0.83546 0.99617 0.99648 0.92755 0.93634 0.92639 0.91822 0.92987 0.92060 0.95601 0.93776 0.89937 0.92525 0.93498 0.89791 0.90050 0.90774 0.91712 0.90735 0.90719 0.88771 0.93298 0.95721 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 2 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 3 Si 0.89 22.58 24.35 -169.99 -4.14 18.44 16 4 H -0.28 -6.93 6.89 56.52 0.39 -6.55 16 5 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.26 -6.48 6.53 56.52 0.37 -6.11 16 7 C -0.51 -14.65 9.15 -34.44 -0.32 -14.96 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.02 0.49 1.85 -91.69 -0.17 0.32 16 10 H 0.04 0.93 7.21 -51.93 -0.37 0.55 16 11 C -0.12 -2.70 4.73 -26.61 -0.13 -2.83 16 12 C -0.12 -2.16 6.09 -26.65 -0.16 -2.32 16 13 C 0.06 1.01 5.30 -3.83 -0.02 0.99 16 14 N -0.53 -9.69 4.60 -234.66 -1.08 -10.77 16 15 C 0.06 0.84 5.35 -3.82 -0.02 0.82 16 16 C 0.07 0.94 5.87 37.16 0.22 1.16 16 17 O -0.34 -5.24 10.22 -59.04 -0.60 -5.84 16 18 C 0.25 3.12 3.20 37.20 0.12 3.24 16 19 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 20 C -0.14 -1.50 5.79 -26.59 -0.15 -1.65 16 21 C -0.12 -0.94 6.03 -26.55 -0.16 -1.10 16 22 C -0.16 -1.14 6.14 -26.59 -0.16 -1.30 16 23 C 0.07 0.59 6.84 37.20 0.25 0.84 16 24 O -0.41 -4.92 10.03 -59.04 -0.59 -5.51 16 25 C 0.08 1.64 4.68 -3.83 -0.02 1.62 16 26 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 27 H 0.05 1.07 3.34 -51.93 -0.17 0.89 16 28 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.89 6.13 -51.93 -0.32 0.57 16 32 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.08 1.27 7.98 -51.93 -0.41 0.86 16 35 H 0.06 0.71 7.74 -51.93 -0.40 0.31 16 36 H 0.05 0.60 6.23 -51.93 -0.32 0.28 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 1.43 8.01 -51.93 -0.42 1.02 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -31.95 345.19 -9.61 -41.56 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -8.36 Total: -2.49 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -0.81 Total: -13.22 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: -0.31 Total: -38.14 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -1.20 Total: -11.36 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.14 Total: 18.44 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.95 -9.61 -41.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620786.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.832 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds