Wall clock time and date at job start Tue Mar 31 2020 05:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00338 * 2 1 4 4 H 1.48504 * 109.46766 * 270.00014 * 3 2 1 5 5 H 1.48504 * 109.46938 * 29.99561 * 3 2 1 6 6 H 1.48496 * 109.47417 * 149.99686 * 3 2 1 7 7 C 1.37877 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99943 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99871 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.51117 * 60.07754 * 9 7 2 11 11 C 1.53117 * 109.50203 * 299.99389 * 9 7 2 12 12 C 1.53120 * 109.16447 * 182.36845 * 11 9 7 13 13 C 1.53039 * 109.27847 * 57.65474 * 12 11 9 14 14 N 1.46845 * 109.52244 * 300.82536 * 13 12 11 15 15 C 1.46904 * 110.99822 * 185.83362 * 14 13 12 16 16 C 1.53006 * 109.46673 * 66.04689 * 15 14 13 17 17 O 1.42895 * 109.47036 * 65.00189 * 16 15 14 18 18 C 1.42901 * 113.99948 * 179.97438 * 17 16 15 19 19 H 1.09000 * 109.48188 * 55.02385 * 18 17 16 20 20 C 1.53091 * 109.48335 * 175.05500 * 18 17 16 21 21 C 1.53175 * 109.16753 * 177.59023 * 20 18 17 22 22 C 1.53173 * 109.03578 * 303.02148 * 21 20 18 23 23 C 1.53090 * 109.16307 * 56.97820 * 22 21 20 24 24 O 1.42899 * 109.41600 * 302.38896 * 23 22 21 25 25 C 1.46853 * 111.20078 * 61.74175 * 14 13 12 26 26 H 0.97000 * 119.99590 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.51971 * 62.46532 * 11 9 7 28 28 H 1.09001 * 109.57890 * 302.30779 * 11 9 7 29 29 H 1.09002 * 109.50373 * 297.71761 * 12 11 9 30 30 H 1.08997 * 109.53770 * 177.61864 * 12 11 9 31 31 H 1.08999 * 109.46333 * 180.80795 * 13 12 11 32 32 H 1.09004 * 109.44820 * 60.83470 * 13 12 11 33 33 H 1.08992 * 109.47335 * 306.04927 * 15 14 13 34 34 H 1.08997 * 109.46819 * 186.04562 * 15 14 13 35 35 H 1.09001 * 109.47002 * 184.99666 * 16 15 14 36 36 H 1.08993 * 109.46955 * 305.00103 * 16 15 14 37 37 H 1.09004 * 109.52556 * 297.50060 * 20 18 17 38 38 H 1.09004 * 109.52289 * 57.68126 * 20 18 17 39 39 H 1.09001 * 109.54716 * 183.15228 * 21 20 18 40 40 H 1.09002 * 109.61232 * 62.92975 * 21 20 18 41 41 H 1.09000 * 109.52240 * 297.07235 * 22 21 20 42 42 H 1.08998 * 109.57405 * 176.91625 * 22 21 20 43 43 H 1.08999 * 109.47940 * 182.40744 * 23 22 21 44 44 H 1.08997 * 109.49340 * 62.38144 * 23 22 21 45 45 H 1.08999 * 109.45812 * 58.26887 * 25 14 13 46 46 H 1.08997 * 109.46251 * 178.24205 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 1 3.8752 -0.6814 0.8916 11 6 4.0231 -0.4728 -1.2489 12 6 5.5531 -0.5289 -1.2707 13 6 6.0057 -1.9905 -1.2377 14 7 5.4915 -2.6361 -0.0231 15 6 6.0201 -4.0000 0.1120 16 6 7.5315 -3.9406 0.3432 17 8 7.7971 -3.3064 1.5959 18 6 9.1870 -3.2000 1.9103 19 1 9.7057 -2.6915 1.0976 20 6 9.3580 -2.4005 3.2046 21 6 10.8451 -2.3423 3.5670 22 6 11.3856 -3.7702 3.6901 23 6 11.1364 -4.5168 2.3770 24 8 9.7380 -4.5072 2.0832 25 6 4.0232 -2.6364 -0.0028 26 1 -0.4849 0.8401 -0.0004 27 1 3.6970 0.5671 -1.2285 28 1 3.6280 -0.9610 -2.1397 29 1 5.9489 -0.0057 -0.4002 30 1 5.9224 -0.0540 -2.1796 31 1 7.0948 -2.0335 -1.2387 32 1 5.6209 -2.5094 -2.1156 33 1 5.8138 -4.5616 -0.7990 34 1 5.5421 -4.4926 0.9587 35 1 7.9372 -4.9522 0.3550 36 1 7.9996 -3.3706 -0.4592 37 1 8.9783 -1.3889 3.0608 38 1 8.8059 -2.8868 4.0088 39 1 10.9689 -1.8224 4.5170 40 1 11.3913 -1.8116 2.7871 41 1 10.8745 -4.2842 4.5040 42 1 12.4559 -3.7392 3.8940 43 1 11.4805 -5.5465 2.4734 44 1 11.6807 -4.0257 1.5704 45 1 3.6479 -3.1525 -0.8865 46 1 3.6725 -3.1486 0.8931 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595620786.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:38 Heat of formation + Delta-G solvation = -121.993164 kcal Electronic energy + Delta-G solvation = -23377.524405 eV Core-core repulsion = 20072.681607 eV Total energy + Delta-G solvation = -3304.842798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.67247 -39.98028 -37.92746 -35.63613 -34.64360 -33.99792 -32.01675 -31.50323 -29.67699 -26.84940 -25.78646 -24.96967 -24.16836 -23.34327 -22.06219 -21.16999 -20.49574 -18.83885 -18.40248 -17.79288 -17.25081 -16.72302 -16.29150 -15.91741 -15.68117 -15.38057 -15.24653 -15.15702 -14.80543 -14.49382 -14.46743 -14.00502 -13.86394 -13.69175 -13.49772 -13.13501 -12.90587 -12.66844 -12.47722 -12.29431 -12.13079 -12.02068 -11.88349 -11.82726 -11.68811 -11.44941 -11.41692 -11.00191 -10.80665 -10.66961 -10.60067 -10.43464 -9.11867 -8.30377 -6.33677 1.29403 1.36561 1.48156 2.33303 2.39579 3.01212 3.03272 3.05517 3.82581 3.86318 3.93132 4.01327 4.02238 4.06810 4.12159 4.15953 4.29634 4.35730 4.44924 4.47746 4.50207 4.60410 4.66704 4.71623 4.74580 4.80529 4.82298 4.86792 4.92635 4.98246 5.03729 5.06287 5.11535 5.12645 5.16056 5.25992 5.35352 5.45641 5.64046 5.74319 6.11268 6.17954 6.27721 6.35615 6.42489 6.73685 7.31995 8.86660 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026807 B = 0.003603 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.239799 B = 7770.099748 C = 8119.694727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.012 3.988 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.299 1.299 6 H -0.251 1.251 7 C -0.519 4.519 8 H 0.032 0.968 9 C 0.021 3.979 10 H 0.021 0.979 11 C -0.121 4.121 12 C -0.113 4.113 13 C 0.061 3.939 14 N -0.543 5.543 15 C 0.055 3.945 16 C 0.075 3.925 17 O -0.374 6.374 18 C 0.251 3.749 19 H 0.061 0.939 20 C -0.141 4.141 21 C -0.116 4.116 22 C -0.157 4.157 23 C 0.063 3.937 24 O -0.430 6.430 25 C 0.089 3.911 26 H 0.266 0.734 27 H 0.034 0.966 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.033 0.967 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.063 0.937 45 H 0.019 0.981 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.056 -6.369 1.979 28.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.227 1.227 6 H -0.175 1.175 7 C -0.558 4.558 8 H 0.050 0.950 9 C 0.002 3.998 10 H 0.039 0.961 11 C -0.159 4.159 12 C -0.151 4.151 13 C -0.067 4.067 14 N -0.268 5.268 15 C -0.072 4.072 16 C -0.001 4.001 17 O -0.293 6.293 18 C 0.155 3.845 19 H 0.078 0.922 20 C -0.179 4.179 21 C -0.154 4.154 22 C -0.194 4.194 23 C -0.012 4.012 24 O -0.352 6.352 25 C -0.038 4.038 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.126 0.874 44 H 0.082 0.918 45 H 0.037 0.963 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 27.816 -6.107 2.482 28.586 hybrid contribution -0.792 0.318 -0.677 1.089 sum 27.024 -5.790 1.805 27.696 Atomic orbital electron populations 1.70050 1.08177 1.28010 1.52929 1.25851 0.95417 1.03001 0.94172 0.85773 0.78965 0.78565 0.78704 1.19029 1.22678 1.17474 1.21346 0.91499 0.93000 1.49951 0.94950 1.19050 0.92833 0.93597 0.94338 0.96115 1.21908 0.95928 0.98773 0.99256 1.21614 0.94592 0.96707 1.02168 1.22121 1.00157 0.94414 0.89997 1.61894 1.07729 1.18401 1.38775 1.22157 0.94382 0.89515 1.01186 1.22539 0.94972 0.97287 0.85287 1.88161 1.22825 1.79100 1.39255 1.23082 0.81366 0.83567 0.96438 0.92203 1.22022 0.98708 1.00641 0.96525 1.21601 0.93024 0.97502 1.03248 1.22233 1.03048 0.95833 0.98300 1.22751 0.79424 1.02650 0.96418 1.87778 1.25731 1.30081 1.91641 1.21765 0.86046 0.97215 0.98797 0.92550 0.94740 0.93116 0.92188 0.89744 0.89021 0.94908 0.92059 0.91075 0.91451 0.92094 0.90404 0.91850 0.89797 0.90435 0.91774 0.88238 0.87422 0.91839 0.96274 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 2 C 0.01 0.74 5.45 84.66 0.46 1.20 16 3 Si 0.95 46.84 24.35 68.60 1.67 48.51 16 4 H -0.26 -12.22 6.89 99.48 0.69 -11.54 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.25 -11.72 6.53 99.48 0.65 -11.07 16 7 C -0.52 -30.77 9.15 25.60 0.23 -30.54 16 8 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 9 C 0.02 1.03 1.85 -11.49 -0.02 1.01 16 10 H 0.02 1.07 7.21 -2.39 -0.02 1.06 16 11 C -0.12 -5.19 4.73 30.67 0.15 -5.05 16 12 C -0.11 -3.76 6.09 30.65 0.19 -3.57 16 13 C 0.06 1.82 5.30 86.33 0.46 2.27 16 14 N -0.54 -18.91 4.60 -896.33 -4.13 -23.04 16 15 C 0.06 1.58 5.35 86.30 0.46 2.05 16 16 C 0.08 1.88 5.87 71.98 0.42 2.30 16 17 O -0.37 -10.97 10.22 -126.21 -1.29 -12.25 16 18 C 0.25 5.74 3.20 72.01 0.23 5.97 16 19 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 20 C -0.14 -2.86 5.79 30.68 0.18 -2.68 16 21 C -0.12 -1.54 6.03 30.71 0.19 -1.35 16 22 C -0.16 -1.84 6.14 30.68 0.19 -1.65 16 23 C 0.06 0.87 6.84 72.01 0.49 1.36 16 24 O -0.43 -9.60 10.03 -126.21 -1.27 -10.87 16 25 C 0.09 3.79 4.68 86.33 0.40 4.20 16 26 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 27 H 0.03 1.54 3.34 -2.39 -0.01 1.54 16 28 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.09 2.25 6.13 -2.39 -0.01 2.24 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.55 8.12 -2.39 -0.02 1.53 16 34 H 0.07 2.18 7.98 -2.39 -0.02 2.16 16 35 H 0.07 1.53 7.74 -2.39 -0.02 1.52 16 36 H 0.06 1.33 6.23 -2.39 -0.01 1.32 16 37 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.05 2.37 8.01 -2.39 -0.02 2.35 16 Total: -1.00 -71.05 345.19 0.16 -70.89 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.85 Total: 12.05 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 4.03 Total: -24.48 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -3.83 Total: -83.85 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -2.56 Total: -23.12 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.67 Total: 48.51 kcal Total: -71.05 0.16 -70.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595620786.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.099 kcal (2) G-P(sol) polarization free energy of solvation -71.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds