Wall clock time and date at job start Tue Mar 31 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47017 * 2 1 4 4 C 1.53002 * 109.46843 * 65.00186 * 3 2 1 5 5 C 1.53003 * 109.46985 * 186.15598 * 4 3 2 6 6 C 1.53004 * 109.47259 * 184.99962 * 3 2 1 7 7 N 1.46501 * 109.46768 * 65.27755 * 6 3 2 8 8 C 1.46493 * 120.00180 * 263.93239 * 7 6 3 9 9 C 1.50709 * 109.47422 * 275.16980 * 8 7 6 10 10 H 1.08003 * 119.99711 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00166 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99920 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99783 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47309 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47064 * 119.99905 * 13 11 9 16 16 H 1.48502 * 109.46732 * 239.99634 * 13 11 9 17 17 C 1.34777 * 119.99472 * 83.93963 * 7 6 3 18 18 O 1.21276 * 120.00798 * 5.12515 * 17 7 6 19 19 C 1.50708 * 119.99496 * 185.12472 * 17 7 6 20 20 H 1.09000 * 109.46786 * 47.14980 * 19 17 7 21 21 O 1.42902 * 109.46852 * 167.14837 * 19 17 7 22 22 C 1.53001 * 109.47319 * 287.14794 * 19 17 7 23 23 C 1.52997 * 117.49705 * 174.19521 * 22 19 17 24 24 C 1.53003 * 60.03112 * 107.48020 * 23 22 19 25 25 H 1.09010 * 109.47039 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47083 * 299.99745 * 1 2 3 27 27 H 1.08999 * 109.47208 * 59.99962 * 1 2 3 28 28 H 1.09000 * 109.47083 * 240.00255 * 2 1 3 29 29 H 1.08999 * 109.47208 * 120.00038 * 2 1 3 30 30 H 1.08994 * 109.47081 * 305.00102 * 3 2 1 31 31 H 1.09000 * 109.47177 * 306.14953 * 4 3 2 32 32 H 1.08993 * 109.47284 * 66.15293 * 4 3 2 33 33 H 1.09000 * 109.47507 * 64.16990 * 5 4 3 34 34 H 1.08994 * 109.47214 * 184.17461 * 5 4 3 35 35 H 1.09005 * 109.47182 * 304.17035 * 5 4 3 36 36 H 1.08998 * 109.46721 * 305.28281 * 6 3 2 37 37 H 1.08991 * 109.47096 * 185.28354 * 6 3 2 38 38 H 1.09003 * 109.47491 * 35.17124 * 8 7 6 39 39 H 1.09003 * 109.47466 * 155.17163 * 8 7 6 40 40 H 0.96995 * 120.00235 * 179.97438 * 12 11 9 41 41 H 0.96697 * 114.00124 * 59.99741 * 21 19 17 42 42 H 1.08999 * 115.54578 * 28.52408 * 22 19 17 43 43 H 1.08999 * 117.49770 * 214.97656 * 23 22 19 44 44 H 1.08999 * 117.49923 * 359.97438 * 23 22 19 45 45 H 1.08995 * 117.50437 * 107.50407 * 24 23 22 46 46 H 1.09005 * 117.49537 * 252.52357 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6352 2.1265 1.3074 5 6 2.0092 3.6087 1.2446 6 6 3.5648 1.4444 -0.1257 7 7 3.9477 0.9040 -1.4325 8 6 4.3105 -0.5093 -1.5630 9 6 5.7670 -0.6878 -1.2198 10 1 6.3630 0.1662 -0.9335 11 6 6.3391 -1.9412 -1.2722 12 7 5.6135 -2.9811 -1.6213 13 14 8.1443 -2.1625 -0.8461 14 1 8.7332 -0.8472 -0.4879 15 1 8.2708 -3.0921 0.3050 16 1 8.8640 -2.7242 -2.0174 17 6 3.9662 1.7073 -2.5146 18 8 3.7569 2.8955 -2.3916 19 6 4.2470 1.1288 -3.8776 20 1 3.6419 0.2342 -4.0243 21 8 3.9222 2.0935 -4.8806 22 6 5.7294 0.7645 -3.9815 23 6 6.1906 0.0345 -5.2445 24 6 6.5666 1.5020 -5.0295 25 1 -0.3634 -1.0278 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6053 1.9815 -0.8418 31 1 0.5590 2.0292 1.4503 32 1 2.1564 1.6552 2.1405 33 1 1.4323 4.0961 0.4587 34 1 1.7890 4.0799 2.2024 35 1 3.0731 3.7061 1.0278 36 1 3.9951 0.8271 0.6629 37 1 3.9358 2.4649 -0.0316 38 1 3.7013 -1.1051 -0.8832 39 1 4.1361 -0.8361 -2.5882 40 1 6.0160 -3.8628 -1.6586 41 1 4.4239 2.9172 -4.8112 42 1 6.2157 0.5014 -3.0421 43 1 6.9807 -0.7085 -5.1362 44 1 5.4379 -0.1865 -6.0013 45 1 7.6040 1.7244 -4.7798 46 1 6.0609 2.2464 -5.6445 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597159656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:21 Heat of formation + Delta-G solvation = -86.151987 kcal Electronic energy + Delta-G solvation = -24343.759000 eV Core-core repulsion = 21040.470392 eV Total energy + Delta-G solvation = -3303.288608 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.79624 -37.75035 -36.50986 -34.89172 -34.19987 -32.52135 -31.52575 -29.08489 -27.47863 -26.50755 -23.85842 -23.08397 -22.23894 -21.93067 -20.48099 -19.68763 -18.76006 -16.85679 -16.55192 -16.23326 -15.94832 -14.97279 -14.64387 -14.44332 -14.29571 -13.88819 -13.65581 -13.41508 -13.17928 -12.73035 -12.48074 -12.40879 -12.18906 -11.73895 -11.63513 -11.48476 -11.35631 -11.10076 -11.08628 -10.97417 -10.92470 -10.80271 -10.39065 -10.27848 -10.19228 -10.06546 -9.99836 -9.82949 -9.71456 -9.62715 -8.76392 -8.54978 -7.71285 -6.24607 -4.30771 3.16052 3.24956 3.26581 3.32319 3.84791 4.25577 4.32067 4.77966 5.03484 5.07559 5.15036 5.15953 5.25276 5.34056 5.43883 5.49825 5.59144 5.69523 5.71317 5.87626 5.94203 5.94830 6.02319 6.05132 6.09547 6.12553 6.16438 6.24555 6.32255 6.34614 6.39632 6.44112 6.58686 6.61222 6.62154 6.79834 6.81915 6.98687 7.13747 7.50166 7.69286 7.91275 7.99243 8.30784 8.71842 8.94824 9.35462 10.81591 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012160 B = 0.007171 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.012105 B = 3903.443189 C = 5196.428643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.101 4.101 4 C -0.116 4.116 5 C -0.153 4.153 6 C 0.123 3.877 7 N -0.588 5.588 8 C 0.231 3.769 9 C -0.536 4.536 10 H 0.062 0.938 11 C 0.070 3.930 12 N -0.884 5.884 13 Si 0.890 3.110 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.492 3.508 18 O -0.569 6.569 19 C 0.127 3.873 20 H 0.121 0.879 21 O -0.548 6.548 22 C -0.181 4.181 23 C -0.162 4.162 24 C -0.188 4.188 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.265 0.735 41 H 0.377 0.623 42 H 0.151 0.849 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 5.628 0.578 7.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.120 4.120 4 C -0.154 4.154 5 C -0.210 4.210 6 C 0.000 4.000 7 N -0.318 5.318 8 C 0.111 3.889 9 C -0.574 4.574 10 H 0.080 0.920 11 C -0.134 4.134 12 N -0.522 5.522 13 Si 0.717 3.283 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.280 3.720 18 O -0.451 6.451 19 C 0.065 3.935 20 H 0.139 0.861 21 O -0.354 6.354 22 C -0.200 4.200 23 C -0.199 4.199 24 C -0.224 4.224 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.226 0.774 42 H 0.168 0.832 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.875 5.548 0.424 7.398 hybrid contribution 1.458 -0.091 0.484 1.538 sum -3.417 5.458 0.908 6.503 Atomic orbital electron populations 1.21814 0.96674 1.01027 1.01205 1.21651 0.94993 0.96424 1.02904 1.21579 0.96527 0.96105 0.97825 1.21545 1.00883 0.95509 0.97439 1.21816 1.02178 0.96223 1.00760 1.21402 0.93290 0.99671 0.85662 1.48216 1.64194 1.12659 1.06743 1.19612 0.95907 0.74763 0.98588 1.21423 0.95015 0.93711 1.47254 0.91980 1.24895 0.98058 0.95722 0.94729 1.69916 1.36073 0.99460 1.46723 0.86563 0.85003 0.78411 0.78304 1.19649 1.20821 1.20761 1.21229 0.76780 0.86637 0.87360 1.90584 1.52131 1.15782 1.86569 1.21284 0.95289 0.91583 0.85324 0.86116 1.86511 1.68024 1.29226 1.51603 1.23428 0.94371 1.04569 0.97592 1.22768 1.03310 0.94241 0.99548 1.22936 1.00112 0.95756 1.03643 0.93148 0.93009 0.93225 0.90897 0.92055 0.91266 0.91991 0.92100 0.92942 0.93419 0.92234 0.90337 0.91084 0.94104 0.94180 0.92511 0.77416 0.83199 0.88961 0.89181 0.89313 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.68 37.16 0.36 -1.61 16 2 C -0.12 -1.89 4.80 -26.73 -0.13 -2.02 16 3 C -0.10 -1.58 2.00 -90.62 -0.18 -1.77 16 4 C -0.12 -1.52 5.28 -26.73 -0.14 -1.66 16 5 C -0.15 -1.97 9.78 37.16 0.36 -1.61 16 6 C 0.12 2.23 4.72 -4.04 -0.02 2.21 16 7 N -0.59 -11.81 2.18 -175.06 -0.38 -12.19 16 8 C 0.23 5.12 3.90 -5.19 -0.02 5.10 16 9 C -0.54 -12.96 6.88 -34.44 -0.24 -13.19 16 10 H 0.06 1.55 7.68 -52.48 -0.40 1.15 16 11 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.88 -23.11 13.29 55.43 0.74 -22.37 16 13 Si 0.89 19.73 29.54 -169.99 -5.02 14.71 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 C 0.49 10.11 6.92 -10.98 -0.08 10.03 16 18 O -0.57 -12.65 15.95 -14.02 -0.22 -12.87 16 19 C 0.13 2.39 2.89 -27.88 -0.08 2.31 16 20 H 0.12 2.31 6.91 -51.93 -0.36 1.95 16 21 O -0.55 -9.73 12.08 -54.81 -0.66 -10.39 16 22 C -0.18 -3.35 4.92 -90.58 -0.45 -3.80 16 23 C -0.16 -2.70 10.24 -26.73 -0.27 -2.97 16 24 C -0.19 -2.93 9.70 -26.69 -0.26 -3.19 16 25 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 26 H 0.05 0.61 6.44 -51.93 -0.33 0.27 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.28 5.84 -51.93 -0.30 0.98 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.75 6.30 -51.93 -0.33 0.42 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.83 6.32 -51.93 -0.33 0.50 16 36 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 37 H 0.07 1.32 5.70 -51.93 -0.30 1.02 16 38 H 0.04 0.95 6.38 -51.93 -0.33 0.62 16 39 H 0.04 0.93 5.69 -51.93 -0.30 0.63 16 40 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 41 H 0.38 5.95 7.50 45.56 0.34 6.29 16 42 H 0.15 3.20 4.94 -51.93 -0.26 2.94 16 43 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 46 H 0.09 1.32 6.49 -51.93 -0.34 0.99 16 LS Contribution 355.49 15.07 5.36 5.36 Total: -1.00 -26.63 355.49 -8.44 -35.07 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -7.01 Total: 13.20 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -1.24 Total: -10.51 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.35 Total: -34.56 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.89 Total: -23.27 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -26.63 -8.44 -35.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597159656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.081 kcal (2) G-P(sol) polarization free energy of solvation -26.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds