Wall clock time and date at job start Tue Mar 31 2020 06:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47553 * 2 1 4 4 C 1.52998 * 109.47188 * 59.99523 * 3 2 1 5 5 C 1.52998 * 109.47275 * 53.58877 * 4 3 2 6 6 C 1.53004 * 109.46600 * 299.99870 * 3 2 1 7 7 O 1.42903 * 109.47288 * 305.77250 * 6 3 2 8 8 C 1.50694 * 109.47432 * 179.97438 * 3 2 1 9 9 O 1.21280 * 120.00125 * 1.73614 * 8 3 2 10 10 N 1.34777 * 119.99883 * 181.73405 * 8 3 2 11 11 C 1.46923 * 120.63479 * 355.00964 * 10 8 3 12 12 C 1.53189 * 108.77543 * 126.38970 * 11 10 8 13 13 C 1.53045 * 109.31333 * 54.64093 * 12 11 10 14 14 C 1.53039 * 109.53278 * 298.63246 * 13 12 11 15 15 H 1.08995 * 109.49772 * 301.38108 * 14 13 12 16 16 C 1.50705 * 109.49661 * 181.31648 * 14 13 12 17 17 H 1.08000 * 119.99900 * 240.00221 * 16 14 13 18 18 C 1.37882 * 119.99803 * 59.99571 * 16 14 13 19 19 N 1.31508 * 119.99638 * 180.02562 * 18 16 14 20 20 Si 1.86790 * 119.99991 * 0.28065 * 18 16 14 21 21 H 1.48503 * 109.47595 * 269.72135 * 20 18 16 22 22 H 1.48511 * 109.47561 * 29.72267 * 20 18 16 23 23 H 1.48504 * 109.47237 * 149.71874 * 20 18 16 24 24 C 1.46932 * 120.62845 * 175.01333 * 10 8 3 25 25 H 1.09000 * 109.47345 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47020 * 300.00511 * 1 2 3 27 27 H 1.08996 * 109.46935 * 60.00218 * 1 2 3 28 28 H 1.09000 * 109.47507 * 239.99344 * 2 1 3 29 29 H 1.09012 * 109.47015 * 119.99505 * 2 1 3 30 30 H 1.09003 * 109.47146 * 173.59197 * 4 3 2 31 31 H 1.09004 * 109.47514 * 293.58598 * 4 3 2 32 32 H 1.09005 * 109.46984 * 299.99798 * 5 4 3 33 33 H 1.08994 * 109.47165 * 59.99996 * 5 4 3 34 34 H 1.09000 * 109.46983 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.47376 * 65.77566 * 6 3 2 36 36 H 1.09004 * 109.46802 * 185.77287 * 6 3 2 37 37 H 0.96695 * 114.00298 * 180.02562 * 7 6 3 38 38 H 1.09000 * 109.58101 * 6.60594 * 11 10 8 39 39 H 1.08995 * 109.58997 * 246.18193 * 11 10 8 40 40 H 1.08999 * 109.49965 * 294.68463 * 12 11 10 41 41 H 1.09009 * 109.52217 * 174.60434 * 12 11 10 42 42 H 1.08997 * 109.46138 * 178.61273 * 13 12 11 43 43 H 1.08997 * 109.45881 * 58.64706 * 13 12 11 44 44 H 0.97000 * 119.99947 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.58814 * 113.81856 * 24 10 8 46 46 H 1.09003 * 109.58568 * 353.39355 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.9041 1.3556 2.4932 6 6 1.5301 2.1636 -1.2493 7 8 1.8925 1.4162 -2.4121 8 6 3.5470 1.4424 0.0006 9 8 4.1534 0.3926 -0.0308 10 7 4.2209 2.6091 0.0361 11 6 3.5046 3.8899 -0.0357 12 6 3.9242 4.7569 1.1555 13 6 5.4488 4.8896 1.1728 14 6 6.0811 3.5055 1.3363 15 1 5.7262 3.0503 2.2608 16 6 7.5813 3.6405 1.3856 17 1 8.1926 3.1457 0.6455 18 6 8.1732 4.3959 2.3756 19 7 9.4823 4.5141 2.4184 20 14 7.1162 5.2454 3.6602 21 1 6.7605 6.6073 3.1868 22 1 5.8762 4.4584 3.8804 23 1 7.8714 5.3460 4.9349 24 6 5.6859 2.6243 0.1471 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.9841 3.1530 1.3084 31 1 0.4461 2.2644 1.1936 32 1 1.4500 0.3664 2.4340 33 1 2.9880 1.2551 2.5489 34 1 1.5403 1.8693 3.3831 35 1 0.4450 2.2541 -1.1992 36 1 1.9754 3.1571 -1.3026 37 1 1.6011 1.8157 -3.2431 38 1 2.4302 3.7103 0.0036 39 1 3.7583 4.3989 -0.9655 40 1 3.5891 4.2896 2.0815 41 1 3.4740 5.7454 1.0631 42 1 5.7485 5.5263 2.0051 43 1 5.7852 5.3341 0.2362 44 1 9.8988 5.0452 3.1151 45 1 6.1175 3.0301 -0.7678 46 1 6.0508 1.6097 0.3070 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:17 Heat of formation + Delta-G solvation = -79.528513 kcal Electronic energy + Delta-G solvation = -24936.015851 eV Core-core repulsion = 21633.014458 eV Total energy + Delta-G solvation = -3303.001392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.83038 -37.75115 -36.81957 -35.52542 -33.55466 -31.77358 -31.23099 -30.55305 -28.88033 -25.66244 -25.11820 -24.21969 -23.25916 -21.69322 -20.98276 -19.20714 -18.34366 -17.48958 -16.83702 -16.25157 -16.17608 -15.47179 -15.08707 -14.75626 -14.36173 -13.97750 -13.66002 -13.44718 -13.32204 -13.07413 -12.73341 -12.68788 -12.50754 -12.27100 -12.20460 -11.96859 -11.67408 -11.51096 -11.28141 -11.15444 -10.95782 -10.71299 -10.58638 -10.35925 -10.25407 -10.16957 -9.98899 -9.79783 -9.48830 -9.15479 -8.91664 -8.57204 -8.02168 -6.09955 -4.09790 3.05969 3.22232 3.34459 3.36704 3.43632 3.97942 4.37604 4.46410 4.77470 4.83800 4.95494 5.08845 5.09502 5.17217 5.20513 5.31167 5.32030 5.37790 5.41771 5.49048 5.61696 5.65685 5.74419 5.85145 5.87394 5.96234 6.02721 6.04333 6.10143 6.21207 6.22723 6.28425 6.37387 6.52445 6.55245 6.70257 6.74426 6.89222 7.15303 7.46391 7.49180 7.72899 7.92908 8.47326 8.64639 8.93908 9.51604 11.03192 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.026097 B = 0.005325 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.662664 B = 5257.162413 C = 5429.345818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.096 4.096 3 C -0.075 4.075 4 C -0.129 4.129 5 C -0.155 4.155 6 C 0.071 3.929 7 O -0.561 6.561 8 C 0.531 3.469 9 O -0.541 6.541 10 N -0.607 5.607 11 C 0.091 3.909 12 C -0.142 4.142 13 C -0.121 4.121 14 C 0.006 3.994 15 H 0.029 0.971 16 C -0.514 4.514 17 H 0.076 0.924 18 C 0.072 3.928 19 N -0.899 5.899 20 Si 0.888 3.112 21 H -0.279 1.279 22 H -0.266 1.266 23 H -0.298 1.298 24 C 0.129 3.871 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.377 0.623 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.264 0.736 45 H 0.060 0.940 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.378 -0.976 -5.158 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.134 4.134 3 C -0.078 4.078 4 C -0.167 4.167 5 C -0.212 4.212 6 C -0.007 4.007 7 O -0.366 6.366 8 C 0.318 3.682 9 O -0.418 6.418 10 N -0.339 5.339 11 C -0.031 4.031 12 C -0.180 4.180 13 C -0.159 4.159 14 C -0.014 4.014 15 H 0.047 0.953 16 C -0.552 4.552 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.206 1.206 22 H -0.191 1.191 23 H -0.225 1.225 24 C 0.008 3.992 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.223 0.777 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.610 -1.870 -4.629 21.206 hybrid contribution -0.627 1.198 0.353 1.398 sum -21.237 -0.671 -4.275 21.673 Atomic orbital electron populations 1.21874 0.95999 1.01588 1.01443 1.21286 0.94784 0.93592 1.03693 1.20873 0.93217 0.98812 0.94920 1.21961 1.01414 1.00116 0.93167 1.21829 1.02529 1.00226 0.96620 1.22660 0.98506 0.94351 0.85180 1.86583 1.82047 1.52002 1.15940 1.20133 0.88864 0.83505 0.75700 1.90650 1.69958 1.31123 1.50051 1.48205 1.08571 1.04944 1.72177 1.22245 0.96962 0.84995 0.98932 1.22065 0.99162 0.98791 0.97975 1.21971 0.91891 1.00572 1.01421 1.19463 0.96766 0.90977 0.94155 0.95251 1.20921 0.88871 1.31391 1.14006 0.90613 1.24979 0.94754 0.96050 0.97227 1.69893 1.09066 1.40555 1.34168 0.86834 0.80552 0.79952 0.80815 1.20627 1.19093 1.22520 1.21736 0.76176 1.02014 0.99249 0.92750 0.92677 0.92785 0.90495 0.91108 0.89731 0.90780 0.91983 0.92165 0.92397 0.92735 0.91939 0.77703 0.88866 0.91693 0.91930 0.91781 0.93233 0.91966 0.92612 0.92169 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.17 37.16 0.34 -1.11 16 2 C -0.10 -1.25 3.55 -26.73 -0.09 -1.34 16 3 C -0.07 -0.98 0.14 -155.66 -0.02 -1.00 16 4 C -0.13 -1.43 4.08 -26.73 -0.11 -1.54 16 5 C -0.15 -1.90 9.21 37.16 0.34 -1.56 16 6 C 0.07 0.74 5.03 37.16 0.19 0.93 16 7 O -0.56 -6.52 12.52 -35.23 -0.44 -6.96 16 8 C 0.53 9.48 5.32 -10.99 -0.06 9.42 16 9 O -0.54 -11.86 15.42 5.56 0.09 -11.78 16 10 N -0.61 -10.72 2.97 -172.77 -0.51 -11.23 16 11 C 0.09 1.27 4.04 -3.71 -0.02 1.25 16 12 C -0.14 -2.19 5.74 -26.61 -0.15 -2.34 16 13 C -0.12 -2.45 4.66 -26.69 -0.12 -2.57 16 14 C 0.01 0.14 1.84 -91.65 -0.17 -0.03 16 15 H 0.03 0.73 7.19 -51.93 -0.37 0.35 16 16 C -0.51 -14.30 9.14 -34.44 -0.31 -14.62 16 17 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 18 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 19 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 20 Si 0.89 21.72 24.39 -169.99 -4.15 17.57 16 21 H -0.28 -6.56 6.86 56.52 0.39 -6.17 16 22 H -0.27 -6.25 6.52 56.52 0.37 -5.88 16 23 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 24 C 0.13 2.74 5.64 -3.71 -0.02 2.72 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.47 6.53 -51.93 -0.34 0.13 16 27 H 0.05 0.48 6.56 -51.93 -0.34 0.13 16 28 H 0.08 1.17 7.48 -51.93 -0.39 0.78 16 29 H 0.07 0.99 6.30 -51.92 -0.33 0.67 16 30 H 0.08 0.95 3.92 -51.93 -0.20 0.75 16 31 H 0.07 0.63 6.79 -51.93 -0.35 0.28 16 32 H 0.06 0.70 6.24 -51.93 -0.32 0.38 16 33 H 0.06 0.93 7.43 -51.93 -0.39 0.54 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.44 6.75 -51.93 -0.35 0.09 16 36 H 0.06 0.61 4.68 -51.93 -0.24 0.37 16 37 H 0.38 2.50 9.12 45.56 0.42 2.91 16 38 H 0.09 1.02 2.68 -51.93 -0.14 0.89 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.99 7.53 -51.93 -0.39 0.59 16 41 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 42 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.08 1.97 7.04 -51.93 -0.37 1.60 16 LS Contribution 327.44 15.07 4.93 4.93 Total: -1.00 -33.74 327.44 -6.03 -39.77 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.42 Total: 4.17 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -0.31 Total: -9.83 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.26 Total: -37.87 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.36 Total: -18.74 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.15 Total: 17.57 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.74 -6.03 -39.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.760 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds