Wall clock time and date at job start Tue Mar 31 2020 06:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 114.00184 * 2 1 4 4 C 1.53770 * 113.69012 * 110.93216 * 3 2 1 5 5 C 1.53778 * 87.08493 * 139.99361 * 4 3 2 6 6 C 1.50698 * 113.61774 * 220.02347 * 5 4 3 7 7 O 1.21278 * 120.00097 * 90.97688 * 6 5 4 8 8 N 1.34777 * 119.99677 * 270.96892 * 6 5 4 9 9 C 1.46502 * 119.99750 * 183.08858 * 8 6 5 10 10 C 1.50698 * 109.46878 * 75.32971 * 9 8 6 11 11 H 1.08002 * 120.00206 * 4.05494 * 10 9 8 12 12 C 1.37871 * 119.99802 * 184.05162 * 10 9 8 13 13 N 1.31514 * 120.00385 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00233 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47189 * 59.99827 * 14 12 10 16 16 H 1.48493 * 109.47509 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46965 * 300.00594 * 14 12 10 18 18 C 1.46504 * 119.99937 * 3.09881 * 8 6 5 19 19 C 1.53011 * 109.46711 * 263.43848 * 18 8 6 20 20 C 1.52998 * 109.46901 * 49.40945 * 19 18 8 21 21 C 1.53001 * 109.46682 * 169.40930 * 19 18 8 22 22 C 1.52993 * 109.46890 * 289.40828 * 19 18 8 23 23 C 1.53777 * 113.61530 * 208.46822 * 3 2 1 24 24 H 1.09007 * 109.46694 * 59.99882 * 1 2 3 25 25 H 1.09000 * 109.47474 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46933 * 300.00480 * 1 2 3 27 27 H 1.09001 * 112.84845 * 339.66489 * 3 2 1 28 28 H 1.09001 * 113.62168 * 254.54026 * 4 3 2 29 29 H 1.09003 * 113.61580 * 25.44498 * 4 3 2 30 30 H 1.09001 * 113.69319 * 89.11917 * 5 4 3 31 31 H 1.09007 * 109.46931 * 195.32428 * 9 8 6 32 32 H 1.08993 * 109.47397 * 315.32733 * 9 8 6 33 33 H 0.97002 * 120.00621 * 179.97438 * 13 12 10 34 34 H 1.08999 * 109.47114 * 23.43949 * 18 8 6 35 35 H 1.08997 * 109.46841 * 143.44329 * 18 8 6 36 36 H 1.08993 * 109.47091 * 67.25211 * 20 19 18 37 37 H 1.09007 * 109.46771 * 187.25364 * 20 19 18 38 38 H 1.09008 * 109.47074 * 307.24852 * 20 19 18 39 39 H 1.09002 * 109.47163 * 60.00161 * 21 19 18 40 40 H 1.08999 * 109.46733 * 180.02562 * 21 19 18 41 41 H 1.08997 * 109.47002 * 299.99459 * 21 19 18 42 42 H 1.09000 * 109.47598 * 70.95812 * 22 19 18 43 43 H 1.09001 * 109.47223 * 190.96347 * 22 19 18 44 44 H 1.08999 * 109.47674 * 310.96292 * 22 19 18 45 45 H 1.09002 * 113.61668 * 334.48588 * 23 3 2 46 46 H 1.09008 * 113.61014 * 105.38061 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 2.7212 1.6653 1.3152 5 6 3.8114 2.3247 0.4541 6 6 5.2096 2.0851 0.9626 7 8 5.8426 1.1286 0.5685 8 7 5.7566 2.9338 1.8553 9 6 7.1394 2.7396 2.2985 10 6 8.0826 3.1812 1.2093 11 1 7.6935 3.6284 0.3065 12 6 9.4423 3.0144 1.3654 13 7 9.9161 2.4694 2.4645 14 14 10.6116 3.5624 0.0156 15 1 10.4532 5.0208 -0.2146 16 1 12.0097 3.2743 0.4247 17 1 10.3013 2.8272 -1.2368 18 6 4.9683 4.0504 2.3826 19 6 5.2827 5.3180 1.5853 20 6 5.1834 5.0167 0.0886 21 6 4.2797 6.4134 1.9527 22 6 6.6992 5.7911 1.9175 23 6 3.3924 1.3644 -0.6716 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.3220 2.0753 -0.3491 28 1 2.1661 2.3714 1.9327 29 1 3.0715 0.7973 1.8738 30 1 3.6168 3.3732 0.2285 31 1 7.3195 3.3305 3.1967 32 1 7.3060 1.6850 2.5179 33 1 10.8727 2.3517 2.5742 34 1 3.9067 3.8195 2.2942 35 1 5.2195 4.2092 3.4313 36 1 4.1465 4.8044 -0.1713 37 1 5.5311 5.8796 -0.4795 38 1 5.8023 4.1515 -0.1497 39 1 4.3504 6.6280 3.0191 40 1 4.5034 7.3162 1.3844 41 1 3.2706 6.0762 1.7160 42 1 7.4237 5.1025 1.4827 43 1 6.8546 6.7889 1.5072 44 1 6.8287 5.8191 2.9994 45 1 3.9262 0.4142 -0.6563 46 1 3.3789 1.8276 -1.6583 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599349557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:32 Heat of formation + Delta-G solvation = -63.766155 kcal Electronic energy + Delta-G solvation = -24380.979960 eV Core-core repulsion = 21078.662075 eV Total energy + Delta-G solvation = -3302.317885 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25703 -38.43554 -36.84931 -35.56998 -33.63118 -32.39887 -28.44878 -27.32175 -26.87353 -26.49047 -25.57433 -25.48803 -24.67196 -22.54695 -19.98021 -19.06834 -17.94284 -16.98311 -16.61270 -15.89616 -15.72974 -15.27919 -15.04434 -14.57073 -14.17127 -14.02920 -13.74750 -13.28065 -13.14469 -12.61544 -12.33853 -12.27453 -12.12377 -12.01501 -11.93117 -11.58359 -11.45023 -11.25143 -10.98306 -10.94337 -10.80042 -10.66405 -10.64444 -10.58379 -10.41344 -10.15622 -9.98558 -9.93235 -9.49043 -9.34085 -8.70069 -8.38818 -7.52560 -6.00995 -4.01530 3.33891 3.38762 3.40966 3.48529 3.70863 4.14237 4.47833 4.60836 4.72332 4.86701 4.95156 5.13872 5.16988 5.23607 5.25105 5.26877 5.34771 5.49230 5.51023 5.56582 5.65735 5.81169 5.86567 5.91911 5.95495 6.03885 6.08750 6.17922 6.22294 6.25232 6.32896 6.44086 6.58162 6.63436 6.70905 6.86284 7.08766 7.23117 7.49662 7.53788 7.65996 7.97248 8.26147 8.53171 8.95807 9.22760 9.59893 11.06933 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017801 B = 0.005499 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.551820 B = 5090.241216 C = 5953.819936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.061 3.939 4 C -0.137 4.137 5 C -0.150 4.150 6 C 0.522 3.478 7 O -0.532 6.532 8 N -0.596 5.596 9 C 0.250 3.750 10 C -0.511 4.511 11 H 0.062 0.938 12 C 0.062 3.938 13 N -0.893 5.893 14 Si 0.891 3.109 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.122 3.878 19 C -0.081 4.081 20 C -0.147 4.147 21 C -0.138 4.138 22 C -0.168 4.168 23 C -0.113 4.113 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.118 0.882 43 H 0.034 0.966 44 H 0.043 0.957 45 H 0.105 0.895 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.683 4.532 -1.949 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C 0.003 3.997 4 C -0.175 4.175 5 C -0.171 4.171 6 C 0.308 3.692 7 O -0.409 6.409 8 N -0.327 5.327 9 C 0.131 3.869 10 C -0.549 4.549 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.532 5.532 14 Si 0.718 3.282 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.002 4.002 19 C -0.082 4.082 20 C -0.204 4.204 21 C -0.196 4.196 22 C -0.225 4.225 23 C -0.151 4.151 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.135 0.865 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.136 0.864 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.123 0.877 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.025 3.784 -2.036 17.559 hybrid contribution 0.481 0.803 -0.599 1.112 sum -16.544 4.587 -2.635 17.369 Atomic orbital electron populations 1.22762 0.81753 1.02510 0.99671 1.88004 1.19136 1.27608 1.94551 1.23757 0.94082 0.84875 0.96978 1.23398 0.96174 1.00955 0.96970 1.22898 0.94159 1.01358 0.98679 1.19865 0.86925 0.82871 0.79560 1.90673 1.63041 1.29697 1.57470 1.48179 1.15352 1.26373 1.42785 1.19244 0.74840 0.97782 0.95059 1.21270 0.90850 1.39476 1.03327 0.92005 1.24904 0.98211 0.95263 0.95605 1.69914 1.13607 1.43711 1.25953 0.86670 0.79931 0.79016 0.82541 1.20201 1.21285 1.20183 1.21574 0.94721 0.86456 0.97485 1.20887 0.96788 0.94721 0.95802 1.22120 1.00385 1.02634 0.95224 1.21864 0.98194 0.98416 1.01092 1.22423 0.97213 1.01578 1.01257 1.23086 0.93889 1.01083 0.97023 0.94240 0.89922 0.94199 0.89597 0.91028 0.88840 0.86464 0.95049 0.94780 0.92755 0.91679 0.91242 0.93587 0.93307 0.90724 0.92921 0.92924 0.93382 0.86425 0.94731 0.93776 0.87657 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.85 101.05 1.10 1.37 16 2 O -0.37 -4.99 10.72 -35.23 -0.38 -5.37 16 3 C 0.06 0.75 4.30 -25.93 -0.11 0.64 16 4 C -0.14 -1.81 6.98 -25.93 -0.18 -1.99 16 5 C -0.15 -2.28 2.45 -90.96 -0.22 -2.50 16 6 C 0.52 10.80 5.49 -10.99 -0.06 10.74 16 7 O -0.53 -13.64 15.55 5.56 0.09 -13.55 16 8 N -0.60 -12.18 1.86 -175.05 -0.33 -12.51 16 9 C 0.25 6.30 4.36 -5.19 -0.02 6.28 16 10 C -0.51 -13.77 6.28 -34.44 -0.22 -13.99 16 11 H 0.06 1.67 5.88 -52.49 -0.31 1.36 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 14 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 18 C 0.12 1.95 4.46 -4.03 -0.02 1.93 16 19 C -0.08 -1.23 0.86 -154.51 -0.13 -1.36 16 20 C -0.15 -2.28 7.05 37.16 0.26 -2.02 16 21 C -0.14 -1.64 8.42 37.16 0.31 -1.33 16 22 C -0.17 -3.00 7.80 37.15 0.29 -2.71 16 23 C -0.11 -1.67 7.28 -25.92 -0.19 -1.86 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.09 0.84 7.88 -51.93 -0.41 0.43 16 28 H 0.07 0.77 7.93 -51.93 -0.41 0.36 16 29 H 0.09 1.43 8.09 -51.93 -0.42 1.01 16 30 H 0.12 1.57 4.19 -51.93 -0.22 1.35 16 31 H 0.03 0.80 7.75 -51.92 -0.40 0.40 16 32 H 0.03 0.99 7.84 -51.93 -0.41 0.59 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.06 0.87 5.91 -51.93 -0.31 0.56 16 35 H 0.07 1.09 7.83 -51.93 -0.41 0.68 16 36 H 0.05 0.60 5.86 -51.93 -0.30 0.29 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.43 4.61 -51.92 -0.24 1.19 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.12 2.57 3.83 -51.93 -0.20 2.37 16 43 H 0.03 0.56 8.10 -51.93 -0.42 0.14 16 44 H 0.04 0.77 8.00 -51.93 -0.42 0.36 16 45 H 0.11 1.86 7.37 -51.93 -0.38 1.48 16 46 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 LS Contribution 348.84 15.07 5.26 5.26 Total: -1.00 -31.61 348.84 -6.70 -38.32 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.77 Total: 1.72 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 0.71 Total: -5.15 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.41 Total: -37.91 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.29 Total: -18.92 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.61 -6.70 -38.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599349557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.451 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds