Wall clock time and date at job start Tue Mar 31 2020 06:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.46773 * 2 1 4 4 C 1.52996 * 109.47256 * 240.00494 * 2 1 3 5 5 C 1.50702 * 109.47372 * 59.99246 * 4 2 1 6 6 H 1.07997 * 119.99776 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00174 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00053 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00294 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46704 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47273 * 120.00279 * 9 7 5 12 12 H 1.48506 * 109.47231 * 240.00485 * 9 7 5 13 13 C 1.52999 * 109.47384 * 120.00145 * 2 1 3 14 14 N 1.46506 * 109.46861 * 299.99826 * 13 2 1 15 15 C 1.34774 * 119.99951 * 179.97438 * 14 13 2 16 16 O 1.21283 * 119.99903 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00235 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47144 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.46811 * 179.97438 * 18 17 15 20 20 O 1.42901 * 112.84973 * 53.80409 * 19 18 17 21 21 C 1.53772 * 113.61475 * 282.49623 * 19 18 17 22 22 C 1.53781 * 87.08354 * 220.02318 * 21 19 18 23 23 C 1.53781 * 113.61135 * 184.99718 * 19 18 17 24 24 H 1.09002 * 109.47170 * 299.99923 * 1 2 3 25 25 H 1.09004 * 109.47777 * 59.99812 * 1 2 3 26 26 H 1.09005 * 109.47437 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46833 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47276 * 299.99682 * 3 2 1 29 29 H 1.08992 * 109.47210 * 60.00093 * 3 2 1 30 30 H 1.09001 * 109.47552 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.46827 * 299.99487 * 4 2 1 32 32 H 0.97000 * 120.00570 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47001 * 180.02562 * 13 2 1 34 34 H 1.08997 * 109.46828 * 59.99973 * 13 2 1 35 35 H 0.96997 * 119.99918 * 0.02562 * 14 13 2 36 36 H 1.09009 * 109.47208 * 59.99839 * 17 15 14 37 37 H 1.09001 * 109.47093 * 300.00146 * 17 15 14 38 38 H 1.08992 * 109.47188 * 60.00163 * 18 17 15 39 39 H 1.08997 * 109.46828 * 299.99882 * 18 17 15 40 40 H 0.96698 * 114.00171 * 309.66692 * 20 19 18 41 41 H 1.09000 * 113.61922 * 334.57064 * 21 19 18 42 42 H 1.08999 * 113.61689 * 105.47008 * 21 19 18 43 43 H 1.09005 * 113.61134 * 270.88438 * 22 21 19 44 44 H 1.08994 * 113.62071 * 139.98148 * 22 21 19 45 45 H 1.09000 * 113.61578 * 254.52872 * 23 19 18 46 46 H 1.09003 * 113.61302 * 25.43614 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.5375 -0.0108 -2.4797 6 1 0.9168 0.8675 -2.3806 7 6 1.8710 -0.4814 -3.7320 8 7 2.6273 -1.5506 -3.8528 9 14 1.2488 0.3995 -5.2572 10 1 0.4231 1.5657 -4.8529 11 1 2.4040 0.8664 -6.0650 12 1 0.4241 -0.5338 -6.0661 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8769 -0.4913 3.6695 16 8 2.5741 -1.4774 3.7807 17 6 1.3741 0.2187 4.9000 18 6 1.8832 -0.5032 6.1492 19 6 1.3733 0.2181 7.3984 20 8 -0.0459 0.3856 7.4021 21 6 2.1482 1.5053 7.7259 22 6 2.0504 1.0945 9.2046 23 6 1.9291 -0.3572 8.7118 24 1 -0.3633 0.5138 0.8900 25 1 -0.3635 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 3.1299 -0.7215 -1.2491 31 1 1.6767 -1.7488 -1.2493 32 1 2.8617 -1.8821 -4.7337 33 1 3.1300 -0.7208 1.2494 34 1 1.6766 -1.7489 1.2491 35 1 0.9937 0.7578 2.3564 36 1 0.2840 0.2187 4.8996 37 1 1.7374 1.2464 4.9003 38 1 2.9732 -0.5036 6.1497 39 1 1.5195 -1.5307 6.1485 40 1 -0.3988 0.7687 6.5874 41 1 3.1679 1.5111 7.3410 42 1 1.6001 2.4172 7.4889 43 1 1.1531 1.4632 9.7018 44 1 2.9601 1.2882 9.7728 45 1 1.2041 -0.9489 9.2707 46 1 2.8889 -0.8607 8.5964 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601583789.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:33 Heat of formation + Delta-G solvation = -97.771092 kcal Electronic energy + Delta-G solvation = -22558.999033 eV Core-core repulsion = 19255.206583 eV Total energy + Delta-G solvation = -3303.792450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.28901 -39.35980 -37.15389 -34.97501 -33.62434 -32.74711 -32.02488 -27.49932 -26.92535 -26.54991 -26.09053 -25.34528 -23.04882 -21.99787 -20.15997 -19.94815 -18.35457 -17.36624 -16.44077 -16.28202 -15.89425 -15.57814 -15.27323 -15.08806 -14.52925 -14.32341 -13.85295 -13.51239 -13.32922 -13.11867 -12.78200 -12.76039 -12.37973 -12.09181 -12.07004 -11.99801 -11.41981 -11.32906 -11.18253 -11.12839 -11.05100 -10.86112 -10.67717 -10.45450 -10.42331 -10.26743 -9.93206 -9.91171 -9.78239 -9.18760 -8.93985 -8.75488 -8.38569 -6.02312 -4.03744 2.77709 3.28308 3.35676 3.37357 3.39965 3.73134 4.19294 4.33100 4.42950 4.51173 4.52360 4.84664 4.88574 4.95692 5.25462 5.33207 5.35905 5.39180 5.42781 5.51583 5.58445 5.59332 5.63696 5.70858 5.72285 5.95576 6.03507 6.05799 6.13004 6.18859 6.25849 6.35623 6.53510 6.59372 6.73223 7.02846 7.04014 7.09594 7.33228 7.61473 7.71453 7.73358 7.96350 8.36834 8.41120 9.01294 9.59574 11.09166 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.046159 B = 0.002629 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.459331 B =10649.183210 C =10837.598871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.127 3.873 14 N -0.722 5.722 15 C 0.506 3.494 16 O -0.546 6.546 17 C -0.146 4.146 18 C -0.119 4.119 19 C 0.106 3.894 20 O -0.543 6.543 21 C -0.167 4.167 22 C -0.136 4.136 23 C -0.128 4.128 24 H 0.028 0.972 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.028 0.972 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.377 0.623 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.261 7.118 21.852 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.004 3.996 14 N -0.374 5.374 15 C 0.292 3.708 16 O -0.424 6.424 17 C -0.186 4.186 18 C -0.158 4.158 19 C 0.065 3.935 20 O -0.350 6.350 21 C -0.205 4.205 22 C -0.174 4.174 23 C -0.165 4.165 24 H 0.047 0.953 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.233 0.767 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.226 0.774 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.611 6.033 22.376 23.322 hybrid contribution -0.600 1.030 -1.683 2.063 sum -3.212 7.063 20.693 22.100 Atomic orbital electron populations 1.21761 0.95277 1.01162 1.00221 1.20898 0.95461 0.95833 0.95083 1.21761 1.00527 0.95904 1.00218 1.19101 0.96366 0.95252 0.89528 1.21212 1.31118 1.12052 0.90494 0.92208 1.25024 0.95319 0.95095 0.99129 1.69975 1.36973 1.23060 1.23358 0.86587 0.78602 0.79669 0.83428 1.19807 1.21125 1.21124 1.21626 0.98875 0.96029 0.83021 1.46240 1.53187 1.31951 1.05994 1.20526 0.80679 0.84806 0.84769 1.90704 1.38215 1.26520 1.86935 1.21661 1.02319 1.01059 0.93541 1.21867 1.02239 1.00221 0.91429 1.22276 0.81019 0.95318 0.94874 1.86484 1.19650 1.85811 1.43061 1.23642 1.01280 0.98326 0.97211 1.22756 1.02045 0.96297 0.96262 1.23024 1.01187 0.97186 0.95085 0.95268 0.91415 0.93372 0.93389 0.91416 0.95274 0.96351 0.96346 0.93075 0.91884 0.91869 0.76704 0.89190 0.88902 0.89884 0.90274 0.77444 0.89263 0.91028 0.89943 0.91428 0.90633 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.05 37.15 0.30 -1.86 16 2 C -0.07 -1.34 0.54 -154.51 -0.08 -1.42 16 3 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 4 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.41 7.65 -34.44 -0.26 -13.67 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.13 2.21 4.57 -4.04 -0.02 2.19 16 14 N -0.72 -9.84 4.96 -60.29 -0.30 -10.14 16 15 C 0.51 6.97 7.83 -10.99 -0.09 6.89 16 16 O -0.55 -9.89 15.98 5.55 0.09 -9.80 16 17 C -0.15 -1.30 5.26 -27.89 -0.15 -1.45 16 18 C -0.12 -1.15 4.14 -26.73 -0.11 -1.26 16 19 C 0.11 0.89 1.38 -89.81 -0.12 0.77 16 20 O -0.54 -4.85 13.39 -35.23 -0.47 -5.32 16 21 C -0.17 -1.22 7.32 -25.92 -0.19 -1.41 16 22 C -0.14 -1.00 8.02 -25.92 -0.21 -1.21 16 23 C -0.13 -1.04 7.47 -25.92 -0.19 -1.23 16 24 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 25 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 29 H 0.03 0.39 6.86 -51.93 -0.36 0.04 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.40 4.44 6.16 -40.82 -0.25 4.19 16 36 H 0.09 0.61 6.75 -51.92 -0.35 0.26 16 37 H 0.09 0.66 8.05 -51.93 -0.42 0.24 16 38 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 39 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 40 H 0.38 2.14 7.18 45.56 0.33 2.47 16 41 H 0.09 0.62 8.03 -51.93 -0.42 0.20 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 361.00 15.07 5.44 5.44 Total: -1.00 -31.78 361.00 -7.99 -39.77 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.43 Total: 2.96 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -1.04 Total: -13.36 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.44 Total: -35.70 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.38 Total: -15.12 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.78 -7.99 -39.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601583789.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.006 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds