Wall clock time and date at job start Tue Mar 31 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 O 1.42896 * 109.49868 * 300.00482 * 3 2 1 5 5 C 1.53049 * 109.49739 * 60.06403 * 3 2 1 6 6 C 1.53041 * 109.53891 * 181.31849 * 5 3 2 7 7 C 1.53190 * 109.31212 * 298.63534 * 6 5 3 8 8 N 1.46929 * 108.77777 * 54.63474 * 7 6 5 9 9 C 1.34774 * 120.62921 * 126.38502 * 8 7 6 10 10 O 1.21283 * 119.99759 * 179.97438 * 9 8 7 11 11 C 1.50700 * 120.00223 * 0.02562 * 9 8 7 12 12 C 1.52996 * 109.47195 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47244 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47279 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47230 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99987 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00019 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99996 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00274 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47248 * 89.99866 * 19 17 15 21 21 H 1.48492 * 109.47291 * 210.00330 * 19 17 15 22 22 H 1.48504 * 109.46950 * 330.00228 * 19 17 15 23 23 C 1.46935 * 118.76367 * 306.41210 * 8 7 6 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96692 * 114.00712 * 59.99434 * 4 3 2 30 30 H 1.08999 * 109.45584 * 301.34057 * 5 3 2 31 31 H 1.09003 * 109.45562 * 61.31026 * 5 3 2 32 32 H 1.08994 * 109.49683 * 58.58446 * 6 5 3 33 33 H 1.08998 * 109.49883 * 178.65227 * 6 5 3 34 34 H 1.09004 * 109.58828 * 174.42606 * 7 6 5 35 35 H 1.09003 * 109.58966 * 294.70423 * 7 6 5 36 36 H 1.08998 * 109.47248 * 299.99865 * 11 9 8 37 37 H 1.09006 * 109.47035 * 59.99442 * 11 9 8 38 38 H 1.09001 * 109.47629 * 299.99899 * 12 11 9 39 39 H 1.08998 * 109.47048 * 59.99744 * 12 11 9 40 40 H 1.09004 * 109.47236 * 299.99914 * 13 12 11 41 41 H 1.08998 * 109.47330 * 59.99889 * 13 12 11 42 42 H 1.09007 * 109.46945 * 299.99517 * 14 13 12 43 43 H 1.08998 * 109.47309 * 59.99534 * 14 13 12 44 44 H 0.96995 * 120.00191 * 179.97438 * 18 17 15 45 45 H 1.08992 * 109.56327 * 293.78251 * 23 8 7 46 46 H 1.09006 * 109.61033 * 173.35520 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.5640 2.1166 -1.1665 5 6 1.5316 2.1640 1.2502 6 6 2.0140 3.6163 1.2348 7 6 3.5456 3.6416 1.2512 8 7 4.0441 2.8282 0.1337 9 6 4.9176 3.3430 -0.7542 10 8 5.3220 2.6612 -1.6720 11 6 5.3928 4.7655 -0.6058 12 6 6.3711 5.0967 -1.7345 13 6 6.8540 6.5406 -1.5835 14 6 7.8318 6.8721 -2.7126 15 6 8.3070 8.2945 -2.5642 16 1 7.9472 8.9016 -1.7466 17 6 9.2011 8.8210 -3.4722 18 7 9.6154 10.0626 -3.3430 19 14 9.8240 7.7709 -4.8859 20 1 8.9234 7.9310 -6.0557 21 1 11.1963 8.2015 -5.2551 22 1 9.8474 6.3453 -4.4708 23 6 3.5720 1.4431 0.0017 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 0.6001 2.1551 -1.2328 30 1 0.4418 2.1434 1.2634 31 1 1.9150 1.6636 2.1395 32 1 1.6517 4.1104 0.3333 33 1 1.6316 4.1361 2.1132 34 1 3.8953 4.6681 1.1406 35 1 3.9078 3.2319 2.1941 36 1 4.5387 5.4409 -0.6549 37 1 5.8939 4.8828 0.3551 38 1 7.2252 4.4214 -1.6850 39 1 5.8703 4.9793 -2.6955 40 1 6.0001 7.2164 -1.6327 41 1 7.3549 6.6576 -0.6225 42 1 8.6858 6.1965 -2.6637 43 1 7.3306 6.7552 -3.6734 44 1 10.2446 10.4328 -3.9815 45 1 3.9367 0.8516 0.8413 46 1 3.9386 1.0191 -0.9333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601820347.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:33 Heat of formation + Delta-G solvation = -117.005238 kcal Electronic energy + Delta-G solvation = -22825.837275 eV Core-core repulsion = 19521.210770 eV Total energy + Delta-G solvation = -3304.626505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.63310 -38.79569 -35.92975 -34.99107 -33.39166 -32.54552 -32.29929 -30.63437 -29.41218 -26.39068 -25.53519 -24.00260 -22.49388 -21.73652 -20.41697 -19.98040 -18.88754 -17.12163 -16.96695 -16.53389 -16.11046 -15.80604 -15.38566 -15.05525 -14.70073 -14.37288 -14.14996 -13.73854 -13.33309 -13.23801 -13.07567 -12.73234 -12.60031 -12.28725 -12.15943 -12.09518 -11.92479 -11.69636 -11.55864 -11.42015 -11.30441 -11.06033 -10.84234 -10.65145 -10.47546 -10.13803 -9.84123 -9.72012 -9.59270 -9.34192 -9.07391 -8.72306 -8.45582 -5.97027 -3.94175 2.74860 2.91014 3.38749 3.45414 3.52212 3.79983 4.24590 4.28177 4.40897 4.53772 4.58940 4.65794 4.69651 4.78621 5.01857 5.09099 5.13774 5.24959 5.29170 5.32082 5.36262 5.38370 5.40678 5.45998 5.47632 5.56410 5.62264 5.68975 5.82036 5.87518 5.93854 6.09919 6.20952 6.37191 6.50024 6.75024 6.88696 7.04773 7.35564 7.36816 7.43534 7.56197 7.88820 8.28454 8.62264 9.08058 9.66589 11.16488 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.036498 B = 0.002801 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.973286 B = 9992.776447 C =10352.814252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.150 4.150 3 C 0.119 3.881 4 O -0.546 6.546 5 C -0.146 4.146 6 C -0.133 4.133 7 C 0.106 3.894 8 N -0.613 5.613 9 C 0.519 3.481 10 O -0.537 6.537 11 C -0.137 4.137 12 C -0.106 4.106 13 C -0.102 4.102 14 C -0.016 4.016 15 C -0.518 4.518 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.907 5.907 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.264 1.264 23 C 0.125 3.875 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.370 0.630 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.015 0.985 43 H 0.011 0.989 44 H 0.262 0.738 45 H 0.076 0.924 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.103 -20.325 13.212 32.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.188 4.188 3 C 0.077 3.923 4 O -0.351 6.351 5 C -0.184 4.184 6 C -0.172 4.172 7 C -0.017 4.017 8 N -0.347 5.347 9 C 0.308 3.692 10 O -0.412 6.412 11 C -0.176 4.176 12 C -0.144 4.144 13 C -0.139 4.139 14 C -0.053 4.053 15 C -0.556 4.556 16 H 0.089 0.911 17 C -0.137 4.137 18 N -0.546 5.546 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.189 1.189 23 C 0.002 3.998 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.217 0.783 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.097 -20.484 12.519 31.308 hybrid contribution -0.382 -0.498 -0.499 0.802 sum -20.479 -20.982 12.020 31.688 Atomic orbital electron populations 1.21836 0.95381 1.02366 1.01897 1.22149 0.96708 0.96703 1.03271 1.21589 0.94481 0.90726 0.85466 1.86684 1.26105 1.79140 1.43201 1.22264 1.01264 0.96580 0.98307 1.21852 0.95558 0.96644 1.03103 1.21746 0.94145 0.96597 0.89208 1.48006 1.45368 1.12936 1.28381 1.21013 0.77642 0.89855 0.80656 1.90677 1.56684 1.61896 1.31990 1.21784 1.01268 0.92207 1.02385 1.21486 0.97746 0.98353 0.96816 1.21471 0.99303 0.92924 1.00247 1.19581 0.94518 0.97233 0.93987 1.21190 1.25579 0.96090 1.12726 0.91119 1.25046 0.96009 0.94833 0.97776 1.69925 1.33372 1.14121 1.37207 0.86769 0.78041 0.81582 0.82891 1.20323 1.21493 1.18878 1.21495 0.90822 0.83729 1.03767 0.92483 0.92224 0.92178 0.90886 0.90780 0.78258 0.91097 0.90940 0.90607 0.90692 0.89072 0.91492 0.89088 0.89170 0.91853 0.91813 0.92912 0.92887 0.96622 0.97048 0.92858 0.90548 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.73 9.26 37.16 0.34 -0.38 16 2 C -0.15 -0.91 5.21 -26.74 -0.14 -1.05 16 3 C 0.12 0.93 0.75 -90.50 -0.07 0.86 16 4 O -0.55 -5.39 12.13 -35.23 -0.43 -5.82 16 5 C -0.15 -0.87 4.58 -26.68 -0.12 -0.99 16 6 C -0.13 -0.90 5.94 -26.61 -0.16 -1.06 16 7 C 0.11 0.86 6.34 -3.71 -0.02 0.83 16 8 N -0.61 -7.02 2.91 -172.76 -0.50 -7.52 16 9 C 0.52 7.82 7.70 -10.99 -0.08 7.74 16 10 O -0.54 -10.28 15.39 5.56 0.09 -10.20 16 11 C -0.14 -1.90 4.05 -27.89 -0.11 -2.02 16 12 C -0.11 -1.90 4.50 -26.73 -0.12 -2.02 16 13 C -0.10 -2.08 5.15 -26.73 -0.14 -2.21 16 14 C -0.02 -0.40 4.04 -27.88 -0.11 -0.51 16 15 C -0.52 -15.31 9.66 -34.44 -0.33 -15.65 16 16 H 0.07 2.21 7.99 -52.49 -0.42 1.80 16 17 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 18 N -0.91 -28.75 13.96 55.43 0.77 -27.97 16 19 Si 0.88 22.75 27.47 -169.99 -4.67 18.08 16 20 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.26 -6.65 6.54 56.52 0.37 -6.28 16 23 C 0.12 1.28 5.39 -3.71 -0.02 1.26 16 24 H 0.06 0.25 6.78 -51.93 -0.35 -0.10 16 25 H 0.06 0.23 6.40 -51.93 -0.33 -0.10 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.37 2.35 7.34 45.56 0.33 2.69 16 30 H 0.07 0.34 6.36 -51.93 -0.33 0.01 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.63 7.61 -51.93 -0.40 0.24 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.70 5.93 -51.93 -0.31 0.39 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 1.13 7.69 -51.93 -0.40 0.73 16 37 H 0.09 1.08 7.94 -51.93 -0.41 0.66 16 38 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 39 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.40 7.20 -51.92 -0.37 0.02 16 43 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 44 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.10 1.28 7.01 -51.93 -0.36 0.92 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -35.76 354.27 -8.15 -43.91 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -7.56 Total: -2.47 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -1.19 Total: -13.35 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.27 Total: -35.50 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.34 Total: -16.01 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.67 Total: 18.08 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.76 -8.15 -43.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601820347.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.100 kcal (2) G-P(sol) polarization free energy of solvation -35.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds