Wall clock time and date at job start Tue Mar 31 2020 06:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45201 * 109.47087 * 2 1 4 4 C 1.34232 * 116.99805 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00248 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99918 * 179.97438 * 4 3 2 7 7 C 1.52992 * 109.47087 * 205.00150 * 6 4 3 8 8 C 1.53001 * 109.47126 * 65.00527 * 7 6 4 9 9 C 1.52996 * 109.46913 * 84.99972 * 6 4 3 10 10 C 1.53004 * 109.47614 * 300.00219 * 9 6 4 11 11 N 1.46901 * 109.46753 * 325.00421 * 6 4 3 12 12 C 1.46900 * 110.99586 * 179.97438 * 11 6 4 13 13 C 1.53000 * 109.47315 * 184.80578 * 12 11 6 14 14 C 1.50700 * 115.55403 * 294.80855 * 13 12 11 15 15 H 1.08003 * 119.99782 * 95.18284 * 14 13 12 16 16 C 1.37875 * 119.99924 * 274.91814 * 14 13 12 17 17 N 1.31517 * 120.00053 * 355.41279 * 16 14 13 18 18 Si 1.86797 * 119.99963 * 175.41425 * 16 14 13 19 19 H 1.48505 * 109.47178 * 60.00138 * 18 16 14 20 20 H 1.48506 * 109.46956 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47116 * 299.99744 * 18 16 14 22 22 C 1.53009 * 117.49464 * 80.47612 * 13 12 11 23 23 C 1.53000 * 117.50097 * 149.13302 * 13 12 11 24 24 H 1.09004 * 109.47184 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47217 * 300.00455 * 1 2 3 26 26 H 1.09002 * 109.46795 * 60.00090 * 1 2 3 27 27 H 1.09002 * 109.47581 * 239.99510 * 2 1 3 28 28 H 1.09002 * 109.46795 * 119.99910 * 2 1 3 29 29 H 1.09001 * 109.47053 * 184.99698 * 7 6 4 30 30 H 1.08998 * 109.47581 * 305.00228 * 7 6 4 31 31 H 1.09001 * 109.47220 * 180.02562 * 8 7 6 32 32 H 1.09009 * 109.46909 * 299.99072 * 8 7 6 33 33 H 1.08993 * 109.47820 * 59.99413 * 8 7 6 34 34 H 1.09006 * 109.46966 * 60.00279 * 9 6 4 35 35 H 1.09001 * 109.47597 * 180.02562 * 9 6 4 36 36 H 1.08991 * 109.47266 * 179.97438 * 10 9 6 37 37 H 1.09001 * 109.46558 * 300.00139 * 10 9 6 38 38 H 1.09006 * 109.46783 * 59.99820 * 10 9 6 39 39 H 1.00902 * 111.00158 * 303.94896 * 11 6 4 40 40 H 1.09002 * 109.47343 * 64.81241 * 12 11 6 41 41 H 1.08997 * 109.47399 * 304.81005 * 12 11 6 42 42 H 0.96997 * 120.00384 * 185.00042 * 17 16 14 43 43 H 1.08998 * 117.49632 * 215.00486 * 22 13 12 44 44 H 1.08992 * 117.49798 * 0.02562 * 22 13 12 45 45 H 1.09008 * 117.49791 * 359.97438 * 23 13 12 46 46 H 1.09000 * 117.49793 * 144.97533 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.3240 2.9086 -0.6090 8 6 5.2322 2.5081 -2.0827 9 6 3.9988 3.4576 1.4367 10 6 2.5955 3.4863 2.0458 11 7 3.0598 3.8231 -0.7953 12 6 3.5912 5.1924 -0.8178 13 6 2.6097 6.1083 -1.5517 14 6 2.4177 5.8142 -3.0172 15 1 1.5962 5.1917 -3.3400 16 6 3.2875 6.3442 -3.9464 17 7 4.2298 7.1784 -3.5643 18 14 3.1277 5.8776 -5.7481 19 1 1.7860 6.2749 -6.2452 20 1 4.1741 6.5779 -6.5355 21 1 3.2957 4.4096 -5.8959 22 6 1.3976 6.6170 -0.7686 23 6 2.5441 7.5719 -1.1105 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8900 29 1 5.7752 3.8976 -0.5287 30 1 5.9378 2.1846 -0.0732 31 1 6.2320 2.4871 -2.5165 32 1 4.7811 1.5190 -2.1630 33 1 4.6184 3.2320 -2.6186 34 1 4.6376 2.8004 2.0268 35 1 4.4150 4.4650 1.4364 36 1 2.6512 3.8564 3.0694 37 1 1.9568 4.1435 1.4556 38 1 2.1789 2.4790 2.0461 39 1 2.9401 3.4659 -1.7314 40 1 4.5513 5.2012 -1.3337 41 1 3.7245 5.5473 0.2041 42 1 4.7952 7.6074 -4.2255 43 1 0.4614 6.7389 -1.3134 44 1 1.2997 6.2995 0.2694 45 1 3.2000 7.8821 -0.2969 46 1 2.3627 8.3219 -1.8802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602843039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:19 Heat of formation + Delta-G solvation = -73.674380 kcal Electronic energy + Delta-G solvation = -24555.944441 eV Core-core repulsion = 21253.196903 eV Total energy + Delta-G solvation = -3302.747538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.65397 -38.00456 -36.47988 -35.72315 -32.09454 -31.90467 -31.50918 -30.80844 -27.07340 -25.49131 -24.67799 -23.52952 -21.93041 -21.76182 -20.90736 -19.34975 -18.84829 -17.42124 -16.52977 -16.35284 -15.69716 -15.02401 -14.60336 -14.46609 -14.06574 -13.87929 -13.55357 -13.21148 -13.12451 -12.73953 -12.58898 -12.44620 -12.39291 -11.81960 -11.69136 -11.53653 -11.44214 -11.25963 -11.06462 -10.95790 -10.90954 -10.73695 -10.58652 -10.44676 -10.39402 -10.31573 -10.07313 -9.88168 -9.31851 -8.81670 -8.38693 -8.05589 -7.56485 -6.01160 -4.08414 2.45453 2.91490 3.28806 3.34536 3.37317 4.39562 4.55161 4.84831 4.95345 4.98416 5.07428 5.15836 5.27111 5.28650 5.50616 5.53015 5.64942 5.67599 5.71078 5.77049 5.81176 5.99397 6.02124 6.07627 6.12724 6.20833 6.27276 6.34002 6.40051 6.51406 6.56242 6.60660 6.69132 6.73149 6.85156 6.88007 6.96236 7.22969 7.48478 7.60676 7.83385 7.89991 8.01798 8.20866 8.51221 8.95208 9.57452 11.05607 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.006026 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.104368 B = 4645.278504 C = 4914.900098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.330 6.330 4 C 0.484 3.516 5 O -0.520 6.520 6 C 0.125 3.875 7 C -0.142 4.142 8 C -0.160 4.160 9 C -0.109 4.109 10 C -0.146 4.146 11 N -0.654 5.654 12 C 0.101 3.899 13 C 0.049 3.951 14 C -0.493 4.493 15 H 0.059 0.941 16 C 0.072 3.928 17 N -0.879 5.879 18 Si 0.883 3.117 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.276 1.276 22 C -0.199 4.199 23 C -0.155 4.155 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.352 0.648 40 H 0.038 0.962 41 H 0.047 0.953 42 H 0.259 0.741 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.067 -9.686 8.411 12.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.245 6.245 4 C 0.327 3.673 5 O -0.408 6.408 6 C 0.032 3.968 7 C -0.181 4.181 8 C -0.218 4.218 9 C -0.147 4.147 10 C -0.203 4.203 11 N -0.288 5.288 12 C -0.027 4.027 13 C 0.048 3.952 14 C -0.531 4.531 15 H 0.077 0.923 16 C -0.131 4.131 17 N -0.515 5.515 18 Si 0.711 3.289 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.237 4.237 23 C -0.194 4.194 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.173 0.827 40 H 0.056 0.944 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.123 -9.819 8.852 13.390 hybrid contribution 0.849 -0.438 -1.708 1.957 sum -1.274 -10.258 7.144 12.565 Atomic orbital electron populations 1.21765 0.92752 1.02355 1.03856 1.22973 0.95489 0.81451 1.01896 1.86723 1.24228 1.30569 1.82982 1.23737 0.80543 0.92077 0.70931 1.90609 1.60809 1.42997 1.46390 1.20901 0.91544 0.87070 0.97284 1.22107 0.96112 1.02846 0.97036 1.21855 1.02493 1.01555 0.95882 1.21596 0.98932 1.01969 0.92194 1.21731 0.96475 1.02551 0.99536 1.60667 1.46457 1.02160 1.19473 1.21600 0.97201 0.86498 0.97372 1.18697 0.92720 0.90749 0.93034 1.20434 1.11824 1.31571 0.89236 0.92296 1.24969 0.94951 0.94992 0.98217 1.69986 1.19976 1.28063 1.33514 0.86813 0.77707 0.78807 0.85600 1.20336 1.21430 1.20199 1.22868 0.94125 1.07877 0.98808 1.22496 1.00227 0.95667 1.00977 0.90824 0.91509 0.91171 0.91708 0.91881 0.90052 0.91148 0.92463 0.93101 0.91012 0.92059 0.89934 0.93630 0.90080 0.93165 0.82671 0.94371 0.93502 0.93098 0.91037 0.91697 0.92417 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.29 37.16 0.38 -1.10 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.33 -5.15 8.61 -39.26 -0.34 -5.49 16 4 C 0.48 8.05 5.23 36.01 0.19 8.24 16 5 O -0.52 -9.34 15.03 -18.75 -0.28 -9.63 16 6 C 0.13 2.03 0.38 -132.76 -0.05 1.98 16 7 C -0.14 -2.28 4.13 -26.73 -0.11 -2.39 16 8 C -0.16 -2.71 9.21 37.16 0.34 -2.37 16 9 C -0.11 -1.58 4.61 -26.73 -0.12 -1.70 16 10 C -0.15 -2.04 9.35 37.16 0.35 -1.70 16 11 N -0.65 -12.00 4.87 -101.14 -0.49 -12.49 16 12 C 0.10 2.07 4.60 -3.82 -0.02 2.05 16 13 C 0.05 1.13 1.65 -155.66 -0.26 0.87 16 14 C -0.49 -12.68 8.32 -34.44 -0.29 -12.97 16 15 H 0.06 1.54 7.82 -52.48 -0.41 1.13 16 16 C 0.07 1.88 5.43 -17.82 -0.10 1.78 16 17 N -0.88 -23.89 12.65 55.43 0.70 -23.19 16 18 Si 0.88 20.55 29.54 -169.99 -5.02 15.53 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 C -0.20 -4.28 9.96 -26.69 -0.27 -4.55 16 23 C -0.16 -3.57 9.14 -26.69 -0.24 -3.82 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 28 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 29 H 0.08 1.32 6.79 -51.93 -0.35 0.97 16 30 H 0.07 1.09 7.69 -51.93 -0.40 0.69 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.86 6.87 -51.92 -0.36 0.50 16 33 H 0.07 1.36 6.41 -51.93 -0.33 1.03 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.19 6.30 -51.93 -0.33 0.86 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 1.29 7.60 -51.93 -0.39 0.89 16 38 H 0.05 0.71 6.40 -51.93 -0.33 0.37 16 39 H 0.35 7.04 6.49 -39.29 -0.26 6.78 16 40 H 0.04 0.86 6.49 -51.93 -0.34 0.52 16 41 H 0.05 0.90 6.01 -51.93 -0.31 0.59 16 42 H 0.26 6.85 8.32 -40.82 -0.34 6.52 16 43 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 46 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -27.35 361.39 -7.97 -35.31 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -8.02 Total: 9.24 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 0.04 Total: -14.73 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.21 Total: -35.68 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.62 Total: -15.12 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.35 -7.97 -35.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602843039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.362 kcal (2) G-P(sol) polarization free energy of solvation -27.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds