Wall clock time and date at job start Tue Mar 31 2020 05:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00324 * 2 1 4 4 H 1.48503 * 109.47146 * 240.00372 * 3 2 1 5 5 H 1.48502 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47089 * 120.00084 * 3 2 1 7 7 C 1.37877 * 119.99468 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99606 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00292 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46850 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99837 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47413 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.46821 * 66.47556 * 12 11 10 14 14 C 1.46867 * 111.00119 * 50.23729 * 13 12 11 15 15 C 1.53021 * 109.59398 * 174.29074 * 14 13 12 16 16 C 1.53144 * 109.32946 * 59.04972 * 15 14 13 17 17 H 1.09000 * 109.53749 * 182.52253 * 16 15 14 18 18 O 1.42907 * 109.53709 * 62.28674 * 16 15 14 19 19 C 1.53080 * 109.08875 * 302.40847 * 16 15 14 20 20 H 1.09002 * 109.56477 * 297.82977 * 19 16 15 21 21 C 1.52965 * 109.60452 * 177.65670 * 19 16 15 22 22 C 1.53027 * 109.39222 * 180.02562 * 21 19 16 23 23 C 1.52982 * 109.52816 * 59.93890 * 22 21 19 24 24 C 1.53024 * 109.54043 * 300.15007 * 23 22 21 25 25 C 1.46812 * 111.00329 * 286.10223 * 13 12 11 26 26 H 1.09000 * 109.35983 * 65.97550 * 25 13 12 27 27 H 0.97002 * 119.99612 * 359.97438 * 1 2 3 28 28 H 1.08993 * 109.47377 * 59.99413 * 9 7 2 29 29 H 1.09005 * 109.46655 * 299.99310 * 9 7 2 30 30 H 1.09001 * 109.47010 * 59.99804 * 11 10 9 31 31 H 1.09004 * 109.47133 * 300.00336 * 11 10 9 32 32 H 1.09000 * 109.46850 * 306.47903 * 12 11 10 33 33 H 1.08998 * 109.46875 * 186.47806 * 12 11 10 34 34 H 1.08997 * 109.44906 * 294.32821 * 14 13 12 35 35 H 1.08998 * 109.45333 * 54.25281 * 14 13 12 36 36 H 1.09000 * 109.49518 * 179.00148 * 15 14 13 37 37 H 1.08997 * 109.50178 * 299.05976 * 15 14 13 38 38 H 0.96694 * 113.99328 * 60.39102 * 18 16 15 39 39 H 1.08993 * 109.48192 * 300.01434 * 21 19 16 40 40 H 1.09001 * 109.48640 * 60.06559 * 21 19 16 41 41 H 1.09001 * 109.46468 * 299.92134 * 22 21 19 42 42 H 1.09003 * 109.46248 * 179.97438 * 22 21 19 43 43 H 1.08997 * 109.45884 * 180.13045 * 23 22 21 44 44 H 1.09002 * 109.45675 * 60.17206 * 23 22 21 45 45 H 1.08999 * 109.48334 * 299.94470 * 24 23 22 46 46 H 1.09001 * 109.47914 * 179.90221 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5854 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6478 -5.9563 0.0017 13 7 3.3848 -5.9103 1.2716 14 6 2.4633 -5.9108 2.4152 15 6 3.2615 -6.0060 3.7173 16 6 4.2222 -4.8171 3.8110 17 1 4.8242 -4.9053 4.7155 18 8 3.4742 -3.6001 3.8499 19 6 5.1383 -4.8158 2.5846 20 1 5.7356 -5.7275 2.5741 21 6 6.0642 -3.5994 2.6369 22 6 6.9771 -3.6025 1.4087 23 6 6.1260 -3.5432 0.1388 24 6 5.1965 -4.7578 0.0885 25 6 4.2838 -4.7505 1.3166 26 1 3.6924 -3.8350 1.3243 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8895 29 1 0.6240 -2.5567 0.8904 30 1 0.9445 -4.9827 -0.8886 31 1 0.9450 -4.9822 0.8913 32 1 3.3366 -5.7809 -0.8247 33 1 2.1836 -6.9357 -0.1138 34 1 1.8814 -4.9892 2.4128 35 1 1.7903 -6.7648 2.3388 36 1 2.5772 -5.9883 4.5656 37 1 3.8304 -6.9356 3.7282 38 1 2.8715 -3.5329 4.6030 39 1 5.4668 -2.6878 2.6437 40 1 6.6715 -3.6432 3.5410 41 1 7.5750 -4.5138 1.4028 42 1 7.6372 -2.7358 1.4445 43 1 6.7771 -3.5478 -0.7353 44 1 5.5306 -2.6302 0.1431 45 1 5.7916 -5.6710 0.0829 46 1 4.5894 -4.7136 -0.8157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602997544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:10 Heat of formation + Delta-G solvation = -109.610341 kcal Electronic energy + Delta-G solvation = -25056.559442 eV Core-core repulsion = 21752.253604 eV Total energy + Delta-G solvation = -3304.305838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13038 -37.11859 -36.28889 -35.24832 -32.71542 -32.09419 -29.91046 -29.81167 -27.95897 -26.61153 -24.05755 -22.90855 -22.51325 -22.05381 -20.35560 -19.51983 -19.19087 -16.66710 -16.31461 -15.87876 -15.62011 -15.06069 -14.92662 -14.85419 -14.27057 -14.06694 -13.61857 -13.37051 -13.23303 -12.99983 -12.75819 -12.35687 -12.01037 -11.79236 -11.56116 -11.50747 -11.25753 -10.95443 -10.93013 -10.79576 -10.76742 -10.73683 -10.60876 -10.40302 -10.17225 -10.07149 -9.91422 -9.45383 -9.33512 -9.06633 -8.74881 -8.13423 -7.66259 -6.06767 -4.07386 3.34434 3.36745 3.40947 4.21492 4.38816 4.55719 4.83150 4.93136 4.98902 5.09888 5.20049 5.30031 5.39097 5.44035 5.54196 5.56882 5.66926 5.70472 5.79380 5.88025 5.91349 5.95547 5.99954 6.01375 6.06041 6.07990 6.15303 6.19115 6.28574 6.33242 6.40357 6.51232 6.61635 6.65773 6.72003 6.77374 7.08316 7.18273 7.46752 7.52146 7.61782 7.83469 7.95986 8.19892 8.61372 9.05122 9.56862 11.04896 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.006532 C = 0.005859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.425462 B = 4285.720333 C = 4777.838642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.056 3.944 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.505 4.505 8 H 0.065 0.935 9 C 0.197 3.803 10 O -0.383 6.383 11 C 0.024 3.976 12 C 0.051 3.949 13 N -0.531 5.531 14 C 0.054 3.946 15 C -0.146 4.146 16 C 0.106 3.894 17 H 0.046 0.954 18 O -0.548 6.548 19 C -0.067 4.067 20 H 0.076 0.924 21 C -0.110 4.110 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.106 4.106 25 C 0.084 3.916 26 H 0.099 0.901 27 H 0.263 0.737 28 H 0.000 1.000 29 H 0.001 0.999 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.370 0.630 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.951 -12.462 6.210 16.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.544 4.544 8 H 0.083 0.917 9 C 0.123 3.877 10 O -0.303 6.303 11 C -0.055 4.055 12 C -0.077 4.077 13 N -0.255 5.255 14 C -0.074 4.074 15 C -0.184 4.184 16 C 0.047 3.953 17 H 0.064 0.936 18 O -0.352 6.352 19 C -0.086 4.086 20 H 0.094 0.906 21 C -0.148 4.148 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.143 4.143 25 C -0.024 4.024 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.018 0.982 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.216 0.784 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.623 -12.621 5.689 16.860 hybrid contribution -0.949 1.345 0.505 1.722 sum 8.674 -11.276 6.194 15.516 Atomic orbital electron populations 1.69959 1.06084 1.27084 1.50889 1.24920 0.94912 0.99302 0.95309 0.86454 0.79374 0.82173 0.78844 1.20084 1.21254 1.19970 1.20961 0.93851 0.89251 1.50307 0.91713 1.20136 0.88793 0.83831 0.94934 1.87902 1.34847 1.12675 1.94865 1.23030 0.96259 0.87002 0.99250 1.22361 0.95510 0.96638 0.93202 1.62219 1.19245 1.42430 1.01574 1.21972 0.94441 1.00910 0.90055 1.22266 0.99124 0.99470 0.97567 1.21827 0.91934 0.84117 0.97438 0.93587 1.86715 1.58757 1.38249 1.51517 1.21192 0.95292 0.98454 0.93680 0.90617 1.21487 0.97128 0.99251 0.96969 1.21522 0.97651 1.00875 0.95309 1.21501 0.97820 0.99644 0.96693 1.21565 0.97199 0.97240 0.98336 1.21788 0.93286 0.94339 0.92938 0.88314 0.92743 0.98182 0.98121 0.94668 0.94345 0.89616 0.90541 0.92968 0.91812 0.91846 0.90901 0.78438 0.90521 0.92861 0.92722 0.92509 0.92626 0.90986 0.92856 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.88 9.43 -34.44 -0.32 -15.20 16 8 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.20 5.44 5.69 36.01 0.20 5.64 16 10 O -0.38 -9.01 7.46 -35.23 -0.26 -9.27 16 11 C 0.02 0.45 5.58 37.16 0.21 0.65 16 12 C 0.05 0.79 5.77 -3.83 -0.02 0.77 16 13 N -0.53 -8.26 4.70 -226.71 -1.07 -9.32 16 14 C 0.05 0.80 4.43 -3.83 -0.02 0.78 16 15 C -0.15 -1.80 5.79 -26.65 -0.15 -1.95 16 16 C 0.11 1.43 3.27 -26.62 -0.09 1.34 16 17 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 18 O -0.55 -8.64 11.42 -35.23 -0.40 -9.04 16 19 C -0.07 -0.98 1.97 -90.58 -0.18 -1.16 16 20 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 21 C -0.11 -1.60 5.05 -26.74 -0.13 -1.73 16 22 C -0.12 -1.56 5.92 -26.73 -0.16 -1.72 16 23 C -0.12 -1.82 5.92 -26.73 -0.16 -1.97 16 24 C -0.11 -1.67 4.85 -26.71 -0.13 -1.80 16 25 C 0.08 1.40 1.02 -67.73 -0.07 1.33 16 26 H 0.10 2.13 5.35 -51.93 -0.28 1.85 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 28 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 29 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.73 6.04 -51.93 -0.31 0.41 16 32 H 0.09 1.35 5.49 -51.93 -0.29 1.06 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.93 6.05 -51.93 -0.31 0.61 16 35 H 0.06 0.85 8.12 -51.93 -0.42 0.42 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.37 4.36 9.09 45.56 0.41 4.78 16 39 H 0.08 1.33 7.64 -51.93 -0.40 0.93 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.07 1.17 6.05 -51.93 -0.31 0.86 16 LS Contribution 341.82 15.07 5.15 5.15 Total: -1.00 -31.56 341.82 -9.36 -40.91 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.37 Total: 4.38 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -1.12 Total: -13.46 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.33 Total: -35.85 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.67 Total: -18.31 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.56 -9.36 -40.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602997544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.696 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds