Wall clock time and date at job start Tue Mar 31 2020 05:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99566 * 2 1 4 4 H 1.48500 * 109.47360 * 239.99913 * 3 2 1 5 5 H 1.48497 * 109.47486 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46575 * 120.00555 * 3 2 1 7 7 C 1.37873 * 120.00493 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00388 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99629 * 359.97438 * 7 2 1 10 10 O 1.42907 * 109.46921 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99656 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46959 * 180.02562 * 11 10 9 13 13 N 1.46897 * 109.47262 * 64.99929 * 12 11 10 14 14 C 1.46851 * 110.99920 * 66.04935 * 13 12 11 15 15 C 1.53035 * 109.55464 * 174.25344 * 14 13 12 16 16 C 1.53124 * 109.29197 * 59.11430 * 15 14 13 17 17 H 1.08997 * 109.52986 * 182.33656 * 16 15 14 18 18 O 1.42903 * 109.52555 * 62.19678 * 16 15 14 19 19 C 1.53153 * 109.11622 * 302.30903 * 16 15 14 20 20 H 1.08996 * 109.54552 * 177.76383 * 19 16 15 21 21 C 1.53024 * 109.31214 * 298.06567 * 19 16 15 22 22 C 1.52978 * 109.50413 * 179.49809 * 21 19 16 23 23 C 1.53011 * 109.46878 * 299.95679 * 22 21 19 24 24 C 1.53006 * 109.43552 * 60.04465 * 23 22 21 25 25 C 1.46828 * 111.00075 * 301.85745 * 13 12 11 26 26 H 1.08997 * 109.44356 * 66.02493 * 25 13 12 27 27 H 0.96995 * 120.00114 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47431 * 60.00306 * 9 7 2 29 29 H 1.09002 * 109.47232 * 300.00379 * 9 7 2 30 30 H 1.09006 * 109.47438 * 60.00307 * 11 10 9 31 31 H 1.08995 * 109.47531 * 299.99984 * 11 10 9 32 32 H 1.09008 * 109.47305 * 305.00233 * 12 11 10 33 33 H 1.09004 * 109.47365 * 185.00422 * 12 11 10 34 34 H 1.09001 * 109.45672 * 54.22527 * 14 13 12 35 35 H 1.09007 * 109.45106 * 294.27959 * 14 13 12 36 36 H 1.08998 * 109.49528 * 299.17224 * 15 14 13 37 37 H 1.09000 * 109.49648 * 179.06223 * 15 14 13 38 38 H 0.96700 * 114.00311 * 60.00082 * 18 16 15 39 39 H 1.08999 * 109.46659 * 59.48559 * 21 19 16 40 40 H 1.09001 * 109.46335 * 299.50585 * 21 19 16 41 41 H 1.08996 * 109.47603 * 179.97438 * 22 21 19 42 42 H 1.08996 * 109.47602 * 59.95304 * 22 21 19 43 43 H 1.09004 * 109.47785 * 300.05727 * 23 22 21 44 44 H 1.08993 * 109.48690 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.46563 * 179.97438 * 24 23 22 46 46 H 1.08997 * 109.46438 * 60.01168 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 2.1799 -3.5852 -0.0005 11 6 1.5653 -4.8753 0.0000 12 6 2.6483 -5.9561 0.0006 13 7 3.4083 -5.8871 1.2558 14 6 2.5624 -6.2396 2.4033 15 6 3.4171 -6.2968 3.6714 16 6 4.0770 -4.9339 3.8986 17 1 4.7195 -4.9821 4.7777 18 8 3.0678 -3.9420 4.0985 19 6 4.9150 -4.5711 2.6691 20 1 5.3562 -3.5840 2.8068 21 6 6.0221 -5.6116 2.4863 22 6 6.8544 -5.2604 1.2518 23 6 5.9538 -5.2530 0.0148 24 6 4.8475 -4.2118 0.1966 25 6 4.0151 -4.5616 1.4314 26 1 3.2296 -3.8174 1.5620 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6248 -2.5570 0.8897 30 1 0.9449 -4.9827 -0.8897 31 1 0.9455 -4.9822 0.8902 32 1 3.3220 -5.7959 -0.8412 33 1 2.1824 -6.9375 -0.0886 34 1 2.1034 -7.2131 2.2305 35 1 1.7829 -5.4873 2.5243 36 1 4.1874 -7.0594 3.5568 37 1 2.7855 -6.5422 4.5251 38 1 2.4949 -4.1114 4.8588 39 1 5.5759 -6.5975 2.3551 40 1 6.6638 -5.6178 3.3673 41 1 7.6430 -6.0015 1.1223 42 1 7.3001 -4.2743 1.3825 43 1 5.5072 -6.2388 -0.1156 44 1 6.5466 -5.0032 -0.8651 45 1 4.2059 -4.2058 -0.6845 46 1 5.2943 -3.2261 0.3270 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602997545.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:12 Heat of formation + Delta-G solvation = -104.080134 kcal Electronic energy + Delta-G solvation = -25123.518981 eV Core-core repulsion = 21819.452950 eV Total energy + Delta-G solvation = -3304.066030 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.35238 -37.13597 -36.25178 -34.91955 -32.79765 -32.31366 -29.90283 -29.50298 -27.94620 -26.61942 -24.05724 -23.01286 -22.47745 -21.99831 -20.77921 -20.11839 -17.92675 -16.64710 -16.31410 -15.92768 -15.67977 -15.46453 -15.03365 -14.79866 -14.27399 -14.01473 -13.74470 -13.36144 -13.27894 -12.66283 -12.52744 -12.09862 -11.99636 -11.81435 -11.69064 -11.53037 -11.36932 -11.09550 -10.94839 -10.84736 -10.77059 -10.71413 -10.56467 -10.39757 -10.18656 -10.03299 -9.71540 -9.51972 -9.33454 -9.06132 -8.71130 -8.13278 -7.53709 -6.06417 -4.07302 3.34795 3.37214 3.41285 4.23602 4.38257 4.47477 4.88504 4.95119 4.99954 5.13880 5.21996 5.29126 5.30431 5.45493 5.57593 5.61894 5.67579 5.74508 5.80180 5.86030 5.89573 5.94557 6.02951 6.04492 6.08508 6.10122 6.13268 6.21418 6.26775 6.34920 6.45140 6.47691 6.64484 6.67450 6.86286 6.97125 7.11270 7.18376 7.47711 7.58485 7.66247 7.83304 7.91069 8.20021 8.60314 9.05061 9.57087 11.05239 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017256 B = 0.005804 C = 0.005647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.202309 B = 4822.873116 C = 4957.405386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.057 3.943 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.507 4.507 8 H 0.065 0.935 9 C 0.194 3.806 10 O -0.378 6.378 11 C 0.024 3.976 12 C 0.056 3.944 13 N -0.525 5.525 14 C 0.055 3.945 15 C -0.147 4.147 16 C 0.106 3.894 17 H 0.046 0.954 18 O -0.553 6.553 19 C -0.074 4.074 20 H 0.074 0.926 21 C -0.104 4.104 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.104 4.104 25 C 0.090 3.910 26 H 0.099 0.901 27 H 0.263 0.737 28 H 0.001 0.999 29 H 0.002 0.998 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.369 0.631 39 H 0.076 0.924 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.078 0.922 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.620 -14.475 5.995 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.546 4.546 8 H 0.083 0.917 9 C 0.120 3.880 10 O -0.298 6.298 11 C -0.055 4.055 12 C -0.073 4.073 13 N -0.249 5.249 14 C -0.073 4.073 15 C -0.185 4.185 16 C 0.047 3.953 17 H 0.064 0.936 18 O -0.358 6.358 19 C -0.093 4.093 20 H 0.092 0.908 21 C -0.141 4.141 22 C -0.149 4.149 23 C -0.152 4.152 24 C -0.141 4.141 25 C -0.017 4.017 26 H 0.117 0.883 27 H 0.073 0.927 28 H 0.019 0.981 29 H 0.020 0.980 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.215 0.785 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.096 0.904 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.336 -14.399 5.435 18.001 hybrid contribution -1.010 1.210 0.628 1.696 sum 8.326 -13.189 6.063 16.734 Atomic orbital electron populations 1.69954 1.06093 1.27099 1.50816 1.24921 0.94910 0.99318 0.95271 0.86454 0.79371 0.82187 0.78821 1.20075 1.21244 1.20009 1.20974 0.93877 0.89288 1.50426 0.91666 1.20155 0.88904 0.83934 0.95023 1.88006 1.34524 1.12739 1.94537 1.22982 0.96267 0.87099 0.99168 1.22300 0.94807 0.96506 0.93646 1.62179 1.31629 1.29851 1.01241 1.21948 0.94896 0.99897 0.90567 1.22297 1.00151 0.98465 0.97554 1.21856 0.89110 0.87187 0.97166 0.93597 1.86706 1.47259 1.49023 1.52780 1.21226 0.95103 0.99282 0.93672 0.90785 1.21469 0.95935 0.99768 0.96932 1.21437 0.97424 1.00583 0.95501 1.21513 0.96832 1.00617 0.96268 1.21529 0.96335 0.97528 0.98738 1.21782 0.96860 0.90020 0.93042 0.88323 0.92733 0.98139 0.98050 0.94595 0.94663 0.89771 0.90776 0.91784 0.93863 0.90448 0.92083 0.78488 0.90581 0.93514 0.92931 0.92767 0.91378 0.93465 0.90353 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 22.25 29.54 -169.99 -5.02 17.22 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.91 9.43 -34.44 -0.32 -15.24 16 8 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.19 5.32 5.69 36.01 0.20 5.52 16 10 O -0.38 -8.69 5.14 -35.23 -0.18 -8.87 16 11 C 0.02 0.44 5.75 37.16 0.21 0.66 16 12 C 0.06 0.84 5.42 -3.83 -0.02 0.81 16 13 N -0.52 -7.77 3.22 -226.72 -0.73 -8.50 16 14 C 0.06 0.76 4.92 -3.83 -0.02 0.74 16 15 C -0.15 -1.72 5.43 -26.65 -0.14 -1.86 16 16 C 0.11 1.43 3.31 -26.59 -0.09 1.34 16 17 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 18 O -0.55 -8.71 12.16 -35.23 -0.43 -9.14 16 19 C -0.07 -1.11 2.24 -90.51 -0.20 -1.31 16 20 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 21 C -0.10 -1.29 4.74 -26.73 -0.13 -1.42 16 22 C -0.11 -1.39 5.92 -26.74 -0.16 -1.55 16 23 C -0.11 -1.58 5.68 -26.72 -0.15 -1.73 16 24 C -0.10 -1.76 4.34 -26.74 -0.12 -1.87 16 25 C 0.09 1.54 1.21 -67.75 -0.08 1.45 16 26 H 0.10 2.17 5.19 -51.93 -0.27 1.90 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 29 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.67 6.45 -51.93 -0.34 0.33 16 32 H 0.08 1.28 6.07 -51.92 -0.31 0.97 16 33 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 34 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 35 H 0.04 0.71 6.26 -51.93 -0.33 0.38 16 36 H 0.08 0.85 6.54 -51.93 -0.34 0.51 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.37 4.16 9.08 45.56 0.41 4.57 16 39 H 0.08 0.96 5.95 -51.93 -0.31 0.65 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.94 7.34 -51.93 -0.38 0.55 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 1.46 5.17 -51.93 -0.27 1.19 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -31.35 334.09 -8.86 -40.21 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.16 Total: 3.53 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -1.11 Total: -12.91 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.01 Total: -35.08 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.61 Total: -18.01 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.35 -8.86 -40.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602997545.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.866 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds