Wall clock time and date at job start Tue Mar 31 2020 05:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99916 * 2 1 4 4 H 1.48500 * 109.47282 * 270.00226 * 3 2 1 5 5 H 1.48499 * 109.46994 * 30.00024 * 3 2 1 6 6 H 1.48496 * 109.47325 * 150.00064 * 3 2 1 7 7 C 1.37870 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00497 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00061 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.47154 * 180.02562 * 9 7 2 11 11 C 1.42901 * 113.99965 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46933 * 180.02562 * 11 10 9 13 13 N 1.46892 * 109.47298 * 62.36586 * 12 11 10 14 14 C 1.46857 * 110.99915 * 51.82549 * 13 12 11 15 15 C 1.53033 * 109.54840 * 185.75178 * 14 13 12 16 16 C 1.53131 * 109.29363 * 300.87651 * 15 14 13 17 17 H 1.08998 * 109.58760 * 297.76932 * 16 15 14 18 18 O 1.42900 * 109.52811 * 177.58783 * 16 15 14 19 19 C 1.53158 * 109.11400 * 57.69506 * 16 15 14 20 20 H 1.08995 * 109.75914 * 182.11082 * 19 16 15 21 21 C 1.53018 * 109.31524 * 61.93672 * 19 16 15 22 22 C 1.52985 * 109.49623 * 180.49692 * 21 19 16 23 23 C 1.52997 * 109.47204 * 60.04541 * 22 21 19 24 24 C 1.53005 * 109.44196 * 299.95930 * 23 22 21 25 25 C 1.46834 * 110.99926 * 176.00972 * 13 12 11 26 26 H 1.09001 * 109.43909 * 294.08645 * 25 13 12 27 27 H 0.97002 * 120.00477 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47184 * 60.00266 * 9 7 2 29 29 H 1.09004 * 109.47173 * 299.99767 * 9 7 2 30 30 H 1.09000 * 109.47295 * 300.00095 * 11 10 9 31 31 H 1.08999 * 109.47388 * 59.99979 * 11 10 9 32 32 H 1.09003 * 109.47191 * 182.37009 * 12 11 10 33 33 H 1.09004 * 109.46968 * 302.36194 * 12 11 10 34 34 H 1.08996 * 109.45462 * 305.77355 * 14 13 12 35 35 H 1.08998 * 109.45830 * 65.73034 * 14 13 12 36 36 H 1.09002 * 109.50226 * 180.93263 * 15 14 13 37 37 H 1.09002 * 109.53515 * 60.84113 * 15 14 13 38 38 H 0.96693 * 114.00320 * 60.36432 * 18 16 15 39 39 H 1.09006 * 109.46322 * 300.50015 * 21 19 16 40 40 H 1.09001 * 109.46827 * 60.48741 * 21 19 16 41 41 H 1.09001 * 109.47014 * 180.02562 * 22 21 19 42 42 H 1.09001 * 109.47304 * 300.04122 * 22 21 19 43 43 H 1.09001 * 109.47533 * 59.94807 * 23 22 21 44 44 H 1.09003 * 109.47776 * 179.97438 * 23 22 21 45 45 H 1.09000 * 109.46868 * 299.98447 * 24 23 22 46 46 H 1.09005 * 109.46605 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9561 0.0006 13 7 3.4483 -5.8467 1.2276 14 6 2.5876 -5.8260 2.4172 15 6 3.4401 -5.5680 3.6617 16 6 4.4946 -6.6709 3.7901 17 1 4.0018 -7.6343 3.9206 18 8 5.3294 -6.4044 4.9189 19 6 5.3473 -6.7000 2.5181 20 1 6.0778 -7.5063 2.5826 21 6 6.0738 -5.3620 2.3650 22 6 6.9172 -5.3821 1.0888 23 6 6.0075 -5.6083 -0.1203 24 6 5.2816 -6.9466 0.0318 25 6 4.4386 -6.9279 1.3080 26 1 3.9247 -7.8833 1.4151 27 1 -0.4851 0.8400 -0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 0.9452 -4.9822 0.8903 31 1 0.9446 -4.9827 -0.8897 32 1 2.1800 -6.9396 -0.0414 33 1 3.2939 -5.8238 -0.8675 34 1 1.8457 -5.0341 2.3148 35 1 2.0819 -6.7865 2.5163 36 1 2.8028 -5.5692 4.5460 37 1 3.9343 -4.6008 3.5707 38 1 4.8544 -6.3717 5.7604 39 1 5.3421 -4.5563 2.3042 40 1 6.7218 -5.1999 3.2263 41 1 7.4349 -4.4290 0.9805 42 1 7.6485 -6.1881 1.1493 43 1 5.2757 -4.8027 -0.1802 44 1 6.6083 -5.6222 -1.0297 45 1 6.0135 -7.7521 0.0917 46 1 4.6330 -7.1079 -0.8293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602997546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:15 Heat of formation + Delta-G solvation = -107.308277 kcal Electronic energy + Delta-G solvation = -24296.823496 eV Core-core repulsion = 20992.617483 eV Total energy + Delta-G solvation = -3304.206013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.46038 -37.16911 -36.53644 -35.16061 -32.87405 -32.43268 -30.33948 -29.62917 -28.06574 -26.59802 -24.25504 -23.27375 -22.31817 -22.15672 -20.81189 -20.34654 -18.19129 -17.12150 -16.38152 -16.12748 -15.69751 -15.41494 -15.19338 -14.76215 -14.47358 -14.22959 -13.75304 -13.46665 -13.17038 -13.13837 -12.79971 -12.64725 -12.19189 -12.02444 -11.82182 -11.71971 -11.40450 -11.32099 -11.01911 -10.82920 -10.79905 -10.77132 -10.68218 -10.38031 -10.28721 -9.97533 -9.81632 -9.74003 -9.62545 -9.05074 -8.75627 -8.11157 -7.95319 -6.07335 -4.08073 3.32919 3.37919 3.43915 3.97000 4.13840 4.38566 4.65121 4.76908 4.91116 4.93164 5.11112 5.11766 5.28557 5.29421 5.30503 5.43106 5.48519 5.56326 5.60785 5.64223 5.66638 5.71638 5.80878 5.85994 5.91134 5.93099 6.04629 6.09147 6.12015 6.25550 6.30505 6.34602 6.43541 6.46830 6.54274 6.68668 6.87085 7.13326 7.33856 7.36457 7.46681 7.59618 7.84803 8.20659 8.65146 9.06791 9.56840 11.04347 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017570 B = 0.004607 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.202445 B = 6076.559065 C = 6151.916201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.376 6.376 11 C 0.061 3.939 12 C 0.059 3.941 13 N -0.510 5.510 14 C 0.055 3.945 15 C -0.149 4.149 16 C 0.108 3.892 17 H 0.045 0.955 18 O -0.565 6.565 19 C -0.066 4.066 20 H 0.071 0.929 21 C -0.104 4.104 22 C -0.113 4.113 23 C -0.117 4.117 24 C -0.111 4.111 25 C 0.092 3.908 26 H 0.032 0.968 27 H 0.263 0.737 28 H 0.001 0.999 29 H 0.001 0.999 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.034 0.966 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.024 0.976 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.374 0.626 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.250 -16.550 5.279 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.296 6.296 11 C -0.017 4.017 12 C -0.068 4.068 13 N -0.235 5.235 14 C -0.072 4.072 15 C -0.187 4.187 16 C 0.049 3.951 17 H 0.063 0.937 18 O -0.370 6.370 19 C -0.085 4.085 20 H 0.090 0.910 21 C -0.141 4.141 22 C -0.150 4.150 23 C -0.154 4.154 24 C -0.148 4.148 25 C -0.017 4.017 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.220 0.780 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.011 -15.938 4.792 18.926 hybrid contribution -1.055 -0.005 0.462 1.152 sum 7.956 -15.944 5.254 18.577 Atomic orbital electron populations 1.69963 1.06103 1.27030 1.50951 1.24934 0.94931 0.99374 0.95287 0.86369 0.79737 0.82394 0.78203 1.20519 1.21173 1.19591 1.21051 0.94082 0.89296 1.50243 0.91502 1.20166 0.88851 0.83987 0.94994 1.87970 1.34450 1.12156 1.94988 1.22352 0.94004 0.86504 0.98869 1.22194 0.95292 0.95711 0.93595 1.61792 1.15652 1.44586 1.01501 1.22091 0.95354 1.00220 0.89573 1.22336 0.97719 1.01213 0.97422 1.21895 0.90692 0.96012 0.86468 0.93676 1.86511 1.38266 1.94944 1.17247 1.21104 0.96428 0.99579 0.91384 0.91043 1.21438 0.98936 0.97065 0.96653 1.21458 0.97485 1.00751 0.95346 1.21478 0.98970 0.98105 0.96872 1.21591 0.98409 0.98423 0.96400 1.21548 0.93025 0.91829 0.95272 0.94974 0.92770 0.98095 0.98088 0.94540 0.94382 0.94769 0.89585 0.89104 0.95834 0.91796 0.89326 0.77975 0.89791 0.92318 0.92309 0.93299 0.89400 0.93082 0.92180 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.06 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -15.00 9.43 -34.44 -0.32 -15.33 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.19 5.32 5.69 36.01 0.20 5.52 16 10 O -0.38 -8.92 10.23 -35.23 -0.36 -9.28 16 11 C 0.06 1.10 5.56 37.16 0.21 1.31 16 12 C 0.06 0.88 4.75 -3.83 -0.02 0.86 16 13 N -0.51 -7.41 3.03 -226.72 -0.69 -8.10 16 14 C 0.06 0.77 5.03 -3.83 -0.02 0.76 16 15 C -0.15 -1.89 5.36 -26.65 -0.14 -2.03 16 16 C 0.11 1.26 3.22 -26.58 -0.09 1.17 16 17 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 18 O -0.56 -6.43 12.57 -35.23 -0.44 -6.88 16 19 C -0.07 -0.82 2.27 -90.51 -0.21 -1.02 16 20 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 21 C -0.10 -1.42 4.57 -26.73 -0.12 -1.54 16 22 C -0.11 -1.44 5.92 -26.74 -0.16 -1.59 16 23 C -0.12 -1.53 5.68 -26.73 -0.15 -1.68 16 24 C -0.11 -1.29 4.92 -26.75 -0.13 -1.42 16 25 C 0.09 1.14 2.02 -67.75 -0.14 1.00 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 29 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 30 H 0.04 0.65 6.04 -51.93 -0.31 0.33 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 1.29 6.16 -51.93 -0.32 0.97 16 34 H 0.09 1.47 5.79 -51.93 -0.30 1.17 16 35 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.33 6.54 -51.93 -0.34 0.99 16 38 H 0.37 2.74 9.09 45.56 0.41 3.16 16 39 H 0.08 1.37 5.95 -51.93 -0.31 1.06 16 40 H 0.06 0.82 7.64 -51.93 -0.40 0.42 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.43 7.30 -51.93 -0.38 1.05 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.73 6.41 -51.93 -0.33 0.39 16 LS Contribution 342.75 15.07 5.17 5.17 Total: -1.00 -31.45 342.75 -9.11 -40.56 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.32 Total: 0.32 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -1.18 Total: -12.49 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.05 Total: -34.44 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.80 Total: -16.16 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.45 -9.11 -40.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602997546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.745 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds