Wall clock time and date at job start Tue Mar 31 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00177 * 2 1 4 4 C 1.53005 * 109.47127 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47147 * 64.99778 * 4 3 2 6 6 C 1.46505 * 119.99845 * 269.99824 * 5 4 3 7 7 C 1.50704 * 109.46914 * 270.00493 * 6 5 4 8 8 H 1.07998 * 120.00414 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99532 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00114 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00161 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47459 * 89.99940 * 11 9 7 13 13 H 1.48500 * 109.47208 * 210.00031 * 11 9 7 14 14 H 1.48499 * 109.47152 * 329.99961 * 11 9 7 15 15 C 1.34778 * 120.00054 * 90.00445 * 5 4 3 16 16 O 1.21278 * 119.99667 * 359.97438 * 15 5 4 17 17 C 1.50701 * 119.99844 * 179.97438 * 15 5 4 18 18 H 1.09003 * 110.53826 * 57.38718 * 17 15 5 19 19 C 1.54884 * 110.48813 * 294.77194 * 17 15 5 20 20 C 1.54884 * 102.75052 * 203.37737 * 19 17 15 21 21 C 1.54274 * 104.19349 * 37.94246 * 20 19 17 22 22 C 1.52997 * 110.03394 * 217.10315 * 21 20 19 23 23 C 1.52999 * 110.06935 * 95.69471 * 21 20 19 24 24 C 1.53875 * 106.59941 * 336.39164 * 21 20 19 25 25 H 1.08997 * 109.47318 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46919 * 300.00182 * 1 2 3 27 27 H 1.08993 * 109.46910 * 59.99949 * 1 2 3 28 28 H 1.08996 * 109.47291 * 59.99758 * 3 2 1 29 29 H 1.09000 * 109.46976 * 299.99715 * 3 2 1 30 30 H 1.09003 * 109.46654 * 304.99491 * 4 3 2 31 31 H 1.08998 * 109.46724 * 185.00240 * 4 3 2 32 32 H 1.08998 * 109.46824 * 30.00527 * 6 5 4 33 33 H 1.08999 * 109.46636 * 150.00467 * 6 5 4 34 34 H 0.96996 * 120.00719 * 179.97438 * 10 9 7 35 35 H 1.09001 * 110.75781 * 321.69788 * 19 17 15 36 36 H 1.09012 * 110.75254 * 85.06502 * 19 17 15 37 37 H 1.09002 * 110.49031 * 279.26699 * 20 19 17 38 38 H 1.08997 * 110.48674 * 156.61877 * 20 19 17 39 39 H 1.09002 * 109.47153 * 177.16766 * 22 21 20 40 40 H 1.09001 * 109.46832 * 57.16957 * 22 21 20 41 41 H 1.09004 * 109.47261 * 297.16938 * 22 21 20 42 42 H 1.08997 * 109.47104 * 182.11704 * 23 21 20 43 43 H 1.08997 * 109.47748 * 302.11985 * 23 21 20 44 44 H 1.09005 * 109.47116 * 62.11823 * 23 21 20 45 45 H 1.09004 * 110.03213 * 119.27940 * 24 21 20 46 46 H 1.08998 * 110.03392 * 240.66692 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1052 -0.8923 -1.3426 7 6 5.5010 -1.2980 -0.9447 8 1 6.2198 -0.5461 -0.6542 9 6 5.8606 -2.6290 -0.9524 10 7 7.0787 -2.9831 -0.6056 11 14 4.6175 -3.9294 -1.4554 12 1 4.7020 -4.1545 -2.9208 13 1 4.9121 -5.1981 -0.7419 14 1 3.2501 -3.4696 -1.1033 15 6 4.2616 1.3335 -2.3218 16 8 4.1540 2.5392 -2.2474 17 6 4.7150 0.6954 -3.6096 18 1 3.9731 -0.0205 -3.9635 19 6 6.0876 0.0039 -3.4181 20 6 6.6543 -0.0358 -4.8590 21 6 6.2134 1.3076 -5.4760 22 6 5.8454 1.1125 -6.9482 23 6 7.3375 2.3377 -5.3493 24 6 4.9803 1.7726 -4.6816 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8514 0.5681 0.8410 31 1 3.9785 2.1764 0.0890 32 1 3.3852 -1.3630 -0.6733 33 1 3.9120 -1.2116 -2.3667 34 1 7.3316 -3.9195 -0.6106 35 1 6.7305 0.5953 -2.7662 36 1 5.9603 -1.0050 -3.0251 37 1 6.2257 -0.8698 -5.4147 38 1 7.7417 -0.1079 -4.8393 39 1 5.4877 2.0556 -7.3614 40 1 5.0616 0.3594 -7.0301 41 1 6.7247 0.7834 -7.5020 42 1 7.0024 3.2927 -5.7539 43 1 7.6010 2.4606 -4.2988 44 1 8.2099 1.9937 -5.9048 45 1 5.1831 2.7317 -4.2051 46 1 4.1199 1.8600 -5.3450 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611614954.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:06 Heat of formation + Delta-G solvation = -100.824844 kcal Electronic energy + Delta-G solvation = -24337.633545 eV Core-core repulsion = 21033.708675 eV Total energy + Delta-G solvation = -3303.924870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.81961 -38.02999 -37.21129 -35.02292 -32.68379 -31.92850 -29.82960 -28.39681 -27.51249 -27.06628 -26.08576 -24.53944 -22.57469 -22.29580 -20.61305 -18.38725 -17.93772 -16.98232 -16.66934 -15.97230 -15.84890 -15.25766 -14.72000 -14.68570 -14.21240 -14.03752 -13.53041 -13.44296 -13.12911 -12.76513 -12.60653 -12.51318 -12.14048 -11.90814 -11.67221 -11.64220 -11.56115 -11.21133 -11.12438 -10.90795 -10.75111 -10.54842 -10.40250 -10.25434 -10.19819 -10.12087 -9.98960 -9.78475 -9.49625 -9.47080 -8.90143 -8.59925 -7.68282 -6.15706 -4.12376 3.22436 3.31684 3.35983 3.40816 3.87968 4.08374 4.33283 4.94910 5.00559 5.11845 5.16618 5.31260 5.38360 5.47053 5.58116 5.59022 5.64425 5.68479 5.73209 5.75007 5.82321 5.83456 5.92380 6.00248 6.05504 6.14080 6.20132 6.23919 6.33518 6.34348 6.41437 6.46604 6.57238 6.60467 6.71350 6.84770 6.90856 7.04205 7.33670 7.38126 7.46572 7.55231 8.21961 8.49167 8.88292 9.00665 9.43644 10.96327 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.011801 B = 0.007588 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.051551 B = 3689.160076 C = 5219.686480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.582 5.582 6 C 0.209 3.791 7 C -0.528 4.528 8 H 0.079 0.921 9 C 0.076 3.924 10 N -0.891 5.891 11 Si 0.863 3.137 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.261 1.261 15 C 0.524 3.476 16 O -0.577 6.577 17 C -0.106 4.106 18 H 0.088 0.912 19 C -0.109 4.109 20 C -0.116 4.116 21 C -0.073 4.073 22 C -0.136 4.136 23 C -0.134 4.134 24 C -0.101 4.101 25 H 0.082 0.918 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.027 0.973 34 H 0.265 0.735 35 H 0.064 0.936 36 H 0.116 0.884 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.080 0.920 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.176 5.943 -5.891 11.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.030 4.030 4 C -0.003 4.003 5 N -0.311 5.311 6 C 0.088 3.912 7 C -0.567 4.567 8 H 0.097 0.903 9 C -0.127 4.127 10 N -0.529 5.529 11 Si 0.689 3.311 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.185 1.185 15 C 0.313 3.687 16 O -0.459 6.459 17 C -0.127 4.127 18 H 0.106 0.894 19 C -0.146 4.146 20 C -0.154 4.154 21 C -0.073 4.073 22 C -0.193 4.193 23 C -0.192 4.192 24 C -0.139 4.139 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.134 0.866 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.099 0.901 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.000 6.212 -5.808 11.015 hybrid contribution -0.830 -0.689 -0.178 1.093 sum -7.830 5.523 -5.986 11.298 Atomic orbital electron populations 1.22682 0.82145 1.02305 0.99335 1.88016 1.18711 1.27815 1.95247 1.23055 0.95401 0.84693 0.99840 1.21340 0.90809 0.99835 0.88288 1.47815 1.64065 1.08932 1.10328 1.19890 0.98168 0.75622 0.97520 1.21371 0.95899 0.93572 1.45849 0.90273 1.24809 0.94954 0.98118 0.94826 1.69886 1.18010 1.17389 1.47584 0.87037 0.82899 0.81904 0.79232 1.19916 1.21093 1.18502 1.20494 0.76000 0.86515 0.85662 1.90552 1.55758 1.14866 1.84704 1.22002 1.00027 0.98000 0.92673 0.89412 1.22837 0.92416 1.04274 0.95079 1.22542 1.00373 0.95484 0.96995 1.21216 0.95345 0.96000 0.94710 1.21904 1.00875 1.01006 0.95543 1.21866 0.97471 0.97970 1.01850 1.22204 0.96521 0.99305 0.95858 0.89991 0.94569 0.94596 0.93114 0.93354 0.89372 0.89304 0.93720 0.95556 0.92498 0.91735 0.86557 0.92017 0.91894 0.93208 0.92792 0.93075 0.93228 0.92411 0.93173 0.90097 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.48 9.53 -35.23 -0.34 -6.82 16 3 C 0.05 0.76 6.28 37.16 0.23 1.00 16 4 C 0.12 2.22 5.81 -4.04 -0.02 2.20 16 5 N -0.58 -12.08 2.42 -175.05 -0.42 -12.51 16 6 C 0.21 4.68 3.58 -5.19 -0.02 4.66 16 7 C -0.53 -13.46 6.66 -34.44 -0.23 -13.69 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 9 C 0.08 2.01 5.27 -17.82 -0.09 1.91 16 10 N -0.89 -25.30 13.96 55.43 0.77 -24.53 16 11 Si 0.86 19.84 27.47 -169.99 -4.67 15.17 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 15 C 0.52 10.87 7.04 -10.98 -0.08 10.79 16 16 O -0.58 -12.80 15.00 5.56 0.08 -12.72 16 17 C -0.11 -1.96 2.31 -90.11 -0.21 -2.17 16 18 H 0.09 1.57 7.30 -51.93 -0.38 1.19 16 19 C -0.11 -2.11 4.74 -24.74 -0.12 -2.23 16 20 C -0.12 -1.89 5.90 -25.07 -0.15 -2.04 16 21 C -0.07 -1.06 0.94 -153.39 -0.14 -1.20 16 22 C -0.14 -1.68 8.16 37.16 0.30 -1.38 16 23 C -0.13 -1.84 8.15 37.16 0.30 -1.54 16 24 C -0.10 -1.65 5.49 -25.61 -0.14 -1.80 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.64 8.07 -51.93 -0.42 1.22 16 31 H 0.09 1.59 7.42 -51.93 -0.39 1.20 16 32 H 0.04 1.04 6.17 -51.93 -0.32 0.72 16 33 H 0.03 0.58 5.44 -51.93 -0.28 0.30 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.06 1.37 8.05 -51.93 -0.42 0.95 16 36 H 0.12 2.59 4.89 -51.92 -0.25 2.33 16 37 H 0.06 0.96 7.84 -51.93 -0.41 0.55 16 38 H 0.06 1.00 7.84 -51.93 -0.41 0.59 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 1.45 6.38 -51.93 -0.33 1.12 16 46 H 0.06 0.86 7.67 -51.93 -0.40 0.47 16 LS Contribution 353.46 15.07 5.33 5.33 Total: -1.00 -28.99 353.46 -6.73 -35.72 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -8.24 Total: 4.32 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 0.75 Total: -3.97 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.35 Total: -37.04 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.25 Total: -19.54 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.67 Total: 15.17 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.99 -6.73 -35.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611614954.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.103 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds