Wall clock time and date at job start Tue Mar 31 2020 05:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42902 * 114.00079 * 2 1 4 4 C 1.53009 * 109.47029 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46864 * 65.00211 * 4 3 2 6 6 C 1.46496 * 119.99731 * 265.16087 * 5 4 3 7 7 C 1.50703 * 109.46988 * 275.39150 * 6 5 4 8 8 H 1.07998 * 120.00117 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00061 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99966 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00280 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46717 * 60.00210 * 11 9 7 13 13 H 1.48496 * 109.47220 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.46926 * 300.00202 * 11 9 7 15 15 C 1.34779 * 120.00085 * 85.16524 * 5 4 3 16 16 O 1.21278 * 119.99983 * 3.71466 * 15 5 4 17 17 C 1.50694 * 119.99833 * 183.72215 * 15 5 4 18 18 H 1.09001 * 110.66852 * 311.02809 * 17 15 5 19 19 C 1.54886 * 110.92032 * 74.37615 * 17 15 5 20 20 C 1.54265 * 104.19939 * 156.32871 * 19 17 15 21 21 C 1.54213 * 106.63444 * 336.40571 * 20 19 17 22 22 C 1.53004 * 110.14039 * 240.73375 * 21 20 19 23 23 C 1.52995 * 110.09052 * 119.19760 * 21 20 19 24 24 C 1.54262 * 106.43020 * 359.97438 * 21 20 19 25 25 H 1.09002 * 109.47378 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47243 * 300.00263 * 1 2 3 27 27 H 1.09001 * 109.47179 * 60.00075 * 1 2 3 28 28 H 1.09001 * 109.47180 * 60.00301 * 3 2 1 29 29 H 1.08993 * 109.47070 * 299.99663 * 3 2 1 30 30 H 1.08994 * 109.46882 * 305.00025 * 4 3 2 31 31 H 1.09002 * 109.46448 * 184.99947 * 4 3 2 32 32 H 1.08996 * 109.47412 * 35.39177 * 6 5 4 33 33 H 1.08997 * 109.47202 * 155.39143 * 6 5 4 34 34 H 0.96999 * 119.99967 * 179.97438 * 10 9 7 35 35 H 1.09002 * 110.48402 * 275.00994 * 19 17 15 36 36 H 1.09004 * 110.48446 * 37.51534 * 19 17 15 37 37 H 1.08996 * 110.02772 * 95.67437 * 20 19 17 38 38 H 1.09001 * 110.02707 * 217.05401 * 20 19 17 39 39 H 1.09005 * 109.47186 * 177.02701 * 22 21 20 40 40 H 1.09003 * 109.47315 * 297.02560 * 22 21 20 41 41 H 1.08999 * 109.47394 * 57.02577 * 22 21 20 42 42 H 1.09011 * 109.46814 * 303.00505 * 23 21 20 43 43 H 1.08994 * 109.47406 * 63.00159 * 23 21 20 44 44 H 1.09003 * 109.47239 * 183.00745 * 23 21 20 45 45 H 1.09007 * 110.49172 * 264.90200 * 24 21 20 46 46 H 1.08998 * 110.48608 * 142.39014 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.2082 -0.8814 -1.3099 7 6 5.6022 -1.1869 -0.8256 8 1 6.2506 -0.3847 -0.5056 9 6 6.0499 -2.4905 -0.7912 10 7 5.2601 -3.4675 -1.1805 11 14 7.7781 -2.8692 -0.1916 12 1 7.9296 -2.4008 1.2094 13 1 8.0132 -4.3342 -0.2524 14 1 8.7653 -2.1736 -1.0557 15 6 4.1695 1.3226 -2.3481 16 8 4.0433 2.5270 -2.2823 17 6 4.5417 0.6744 -3.6565 18 1 5.3670 -0.0243 -3.5187 19 6 3.3198 -0.0372 -4.2886 20 6 3.6530 -0.0962 -5.7936 21 6 4.6603 1.0389 -6.0676 22 6 4.0777 2.0275 -7.0796 23 6 5.9738 0.4595 -6.5967 24 6 4.9001 1.7448 -4.7171 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8507 0.5685 0.8427 31 1 3.9784 2.1765 0.0902 32 1 3.4833 -1.3917 -0.6757 33 1 4.0972 -1.2255 -2.3381 34 1 5.5751 -4.3846 -1.1566 35 1 3.2116 -1.0428 -3.8821 36 1 2.4117 0.5414 -4.1192 37 1 4.1005 -1.0592 -6.0394 38 1 2.7485 0.0562 -6.3825 39 1 4.7756 2.8521 -7.2252 40 1 3.9119 1.5196 -8.0297 41 1 3.1304 2.4152 -6.7048 42 1 6.3674 -0.2617 -5.8803 43 1 5.7940 -0.0367 -7.5503 44 1 6.6958 1.2642 -6.7362 45 1 4.2476 2.6125 -4.6190 46 1 5.9446 2.0415 -4.6219 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611614955.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:09 Heat of formation + Delta-G solvation = -107.895598 kcal Electronic energy + Delta-G solvation = -24125.649078 eV Core-core repulsion = 20821.417597 eV Total energy + Delta-G solvation = -3304.231481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.74604 -38.02490 -37.14382 -34.83463 -32.58467 -32.09957 -29.70947 -28.45436 -27.12777 -26.96535 -25.98887 -24.55700 -22.87856 -22.47482 -20.69030 -18.43456 -17.98982 -16.72665 -16.40643 -15.90007 -15.78403 -15.05859 -14.93342 -14.55049 -14.35974 -13.83093 -13.72074 -13.45681 -13.11622 -12.97184 -12.68065 -12.26022 -11.98829 -11.82265 -11.78696 -11.48442 -11.41147 -11.23331 -11.13879 -10.91872 -10.81176 -10.57968 -10.54275 -10.28423 -10.26013 -10.17610 -10.07990 -9.98941 -9.62720 -9.36283 -8.86025 -8.44696 -7.60830 -6.09366 -4.15885 3.28368 3.33093 3.35135 3.47634 3.99031 4.19169 4.40396 4.84304 4.90028 5.02418 5.23377 5.40403 5.42785 5.50997 5.57932 5.59459 5.65676 5.68214 5.73222 5.76430 5.77473 5.85290 5.88275 5.94631 5.99864 6.04904 6.14097 6.19560 6.20954 6.31319 6.38214 6.42451 6.43285 6.47554 6.66706 6.73411 6.83952 6.96586 7.42168 7.51332 7.67852 7.86874 8.17560 8.48385 8.88086 9.11762 9.50752 10.97091 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.010195 B = 0.007440 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.816311 B = 3762.449804 C = 5524.378197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.049 3.951 4 C 0.122 3.878 5 N -0.586 5.586 6 C 0.235 3.765 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.066 3.934 10 N -0.890 5.890 11 Si 0.894 3.106 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.523 3.477 16 O -0.582 6.582 17 C -0.107 4.107 18 H 0.109 0.891 19 C -0.108 4.108 20 C -0.112 4.112 21 C -0.072 4.072 22 C -0.135 4.135 23 C -0.138 4.138 24 C -0.095 4.095 25 H 0.082 0.918 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.264 0.736 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.076 0.924 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.708 6.516 -6.083 10.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.029 4.029 4 C -0.002 4.002 5 N -0.315 5.315 6 C 0.116 3.884 7 C -0.577 4.577 8 H 0.076 0.924 9 C -0.137 4.137 10 N -0.528 5.528 11 Si 0.721 3.279 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.311 3.689 16 O -0.464 6.464 17 C -0.128 4.128 18 H 0.127 0.873 19 C -0.146 4.146 20 C -0.149 4.149 21 C -0.072 4.072 22 C -0.192 4.192 23 C -0.196 4.196 24 C -0.133 4.133 25 H 0.101 0.899 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.094 0.906 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.672 6.722 -6.052 10.676 hybrid contribution 0.757 -0.228 0.492 0.931 sum -4.915 6.493 -5.560 9.861 Atomic orbital electron populations 1.22673 0.82278 1.02323 0.99131 1.88053 1.18550 1.27540 1.95190 1.23024 0.95448 0.84803 0.99636 1.21293 0.90833 0.99474 0.88630 1.48143 1.63811 1.11040 1.08495 1.19572 0.96467 0.73301 0.99074 1.21509 0.99110 0.92622 1.44437 0.92419 1.24907 0.97556 0.96071 0.95174 1.69924 1.36006 0.99857 1.47041 0.86628 0.84629 0.77142 0.79469 1.20223 1.21195 1.20206 1.20425 0.76157 0.86500 0.85781 1.90548 1.54822 1.14936 1.86113 1.22163 1.00258 0.98435 0.91957 0.87307 1.22300 0.96573 1.01169 0.94569 1.22310 0.98266 0.98239 0.96119 1.21246 0.95386 0.95270 0.95304 1.21880 1.00548 0.98612 0.98205 1.21914 0.96345 1.00694 1.00599 1.22332 1.01575 0.97606 0.91749 0.89910 0.94759 0.94714 0.93371 0.93447 0.89410 0.89843 0.93834 0.93703 0.92622 0.90117 0.92184 0.91481 0.92082 0.92958 0.93089 0.92745 0.92074 0.93091 0.93013 0.90560 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.37 -6.81 9.95 -35.23 -0.35 -7.17 16 3 C 0.05 0.82 6.25 37.16 0.23 1.06 16 4 C 0.12 2.34 5.79 -4.04 -0.02 2.32 16 5 N -0.59 -12.70 2.41 -175.06 -0.42 -13.13 16 6 C 0.24 5.73 4.79 -5.19 -0.02 5.71 16 7 C -0.54 -14.29 9.38 -34.44 -0.32 -14.61 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -24.82 13.29 55.43 0.74 -24.08 16 11 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 15 C 0.52 11.12 6.95 -10.99 -0.08 11.04 16 16 O -0.58 -13.18 15.32 5.56 0.09 -13.09 16 17 C -0.11 -2.01 2.24 -89.78 -0.20 -2.21 16 18 H 0.11 2.24 7.54 -51.93 -0.39 1.85 16 19 C -0.11 -1.83 5.85 -25.07 -0.15 -1.97 16 20 C -0.11 -1.58 6.12 -25.43 -0.16 -1.73 16 21 C -0.07 -0.98 0.95 -153.21 -0.14 -1.13 16 22 C -0.14 -1.59 8.17 37.16 0.30 -1.28 16 23 C -0.14 -1.77 8.16 37.16 0.30 -1.46 16 24 C -0.09 -1.55 5.04 -25.07 -0.13 -1.67 16 25 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.72 8.03 -51.93 -0.42 1.30 16 31 H 0.08 1.55 7.52 -51.93 -0.39 1.16 16 32 H 0.04 1.16 7.49 -51.93 -0.39 0.77 16 33 H 0.05 1.11 4.48 -51.93 -0.23 0.88 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.08 1.47 6.49 -51.93 -0.34 1.14 16 36 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 37 H 0.07 0.93 7.68 -51.93 -0.40 0.54 16 38 H 0.06 0.77 7.69 -51.93 -0.40 0.37 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.08 1.32 7.05 -51.92 -0.37 0.95 16 46 H 0.06 1.02 7.84 -51.93 -0.41 0.62 16 LS Contribution 363.53 15.07 5.48 5.48 Total: -1.00 -29.39 363.53 -7.20 -36.60 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -8.34 Total: 2.25 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 0.63 Total: -2.73 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.31 Total: -37.21 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.27 Total: -20.26 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.39 -7.20 -36.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611614955.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.297 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds