Wall clock time and date at job start Tue Mar 31 2020 06:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47082 * 2 1 4 4 C 1.53003 * 109.47082 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47095 * 184.73109 * 4 3 2 6 6 H 1.09001 * 109.47012 * 182.05974 * 5 4 3 7 7 C 1.50698 * 109.47447 * 62.05415 * 5 4 3 8 8 O 1.20824 * 120.00208 * 240.00227 * 7 5 4 9 9 O 1.34228 * 119.99665 * 60.00125 * 7 5 4 10 10 C 1.45201 * 117.00196 * 180.02562 * 9 7 5 11 11 N 1.46903 * 109.46958 * 302.05906 * 5 4 3 12 12 C 1.46853 * 110.99968 * 188.42713 * 11 5 4 13 13 C 1.53031 * 109.52363 * 185.83827 * 12 11 5 14 14 C 1.53118 * 109.27917 * 300.81844 * 13 12 11 15 15 C 1.50696 * 109.52640 * 177.56187 * 14 13 12 16 16 H 1.07999 * 120.00022 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00095 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99811 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00118 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47194 * 89.99807 * 19 17 15 21 21 H 1.48503 * 109.46970 * 209.99948 * 19 17 15 22 22 H 1.48500 * 109.46957 * 329.99793 * 19 17 15 23 23 C 1.53120 * 109.16073 * 57.65355 * 14 13 12 24 24 C 1.46852 * 110.99654 * 312.63006 * 11 5 4 25 25 H 1.08997 * 109.47093 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47028 * 299.99579 * 1 2 3 27 27 H 1.08998 * 109.47355 * 59.99945 * 1 2 3 28 28 H 1.09004 * 109.47028 * 240.00421 * 2 1 3 29 29 H 1.08998 * 109.47355 * 120.00055 * 2 1 3 30 30 H 1.09003 * 109.47369 * 60.00261 * 3 2 1 31 31 H 1.09004 * 109.47489 * 300.00085 * 3 2 1 32 32 H 1.08996 * 109.47162 * 64.73318 * 4 3 2 33 33 H 1.09001 * 109.47259 * 304.72567 * 4 3 2 34 34 H 1.09006 * 109.46517 * 299.99648 * 10 9 7 35 35 H 1.08995 * 109.47430 * 59.99697 * 10 9 7 36 36 H 1.09001 * 109.47422 * 179.97438 * 10 9 7 37 37 H 1.09001 * 109.46389 * 65.82068 * 12 11 5 38 38 H 1.08997 * 109.45772 * 305.85219 * 12 11 5 39 39 H 1.08996 * 109.50546 * 180.87544 * 13 12 11 40 40 H 1.08999 * 109.50854 * 60.75643 * 13 12 11 41 41 H 1.09004 * 109.52224 * 297.74935 * 14 13 12 42 42 H 0.96996 * 119.99663 * 179.97438 * 18 17 15 43 43 H 1.08994 * 109.50198 * 62.29165 * 23 14 13 44 44 H 1.09005 * 109.50380 * 182.41031 * 23 14 13 45 45 H 1.08991 * 109.46429 * 294.17667 * 24 11 5 46 46 H 1.08994 * 109.45843 * 54.15208 * 24 11 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8801 0.1183 6 1 5.1694 2.8833 0.0811 7 6 3.6204 3.4696 1.4268 8 8 2.9226 4.4559 1.4331 9 8 3.9861 2.8988 2.5853 10 6 3.5061 3.5201 3.8068 11 7 3.5497 3.6813 -0.9929 12 6 4.1728 5.0106 -1.0275 13 6 3.4956 5.8651 -2.1013 14 6 3.6416 5.1769 -3.4614 15 6 2.9252 5.9836 -4.5135 16 1 2.4158 6.8959 -4.2406 17 6 2.9200 5.5568 -5.8246 18 7 2.2942 6.2606 -6.7427 19 14 3.8004 3.9784 -6.2966 20 1 2.8612 2.8339 -6.1806 21 1 4.2847 4.0814 -7.6966 22 1 4.9553 3.7650 -5.3877 23 6 3.0279 3.7762 -3.3843 24 6 3.7187 2.9823 -2.2732 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9330 1.0040 -0.9302 33 1 3.9337 0.8569 0.8437 34 1 3.8685 4.5468 3.8588 35 1 2.4161 3.5189 3.8110 36 1 3.8729 2.9609 4.6674 37 1 5.2330 4.9089 -1.2594 38 1 4.0582 5.4908 -0.0556 39 1 3.9686 6.8464 -2.1374 40 1 2.4382 5.9788 -1.8628 41 1 4.6980 5.0981 -3.7182 42 1 2.2909 5.9605 -7.6651 43 1 1.9631 3.8571 -3.1659 44 1 3.1668 3.2651 -4.3370 45 1 4.7809 2.8901 -2.4993 46 1 3.2742 1.9893 -2.2062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611687781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:17 Heat of formation + Delta-G solvation = -92.194386 kcal Electronic energy + Delta-G solvation = -24116.942182 eV Core-core repulsion = 20813.391556 eV Total energy + Delta-G solvation = -3303.550626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.75389 -38.68937 -36.34026 -36.01682 -33.94879 -32.10755 -30.54423 -30.00872 -28.24530 -26.84598 -24.91262 -23.48275 -22.18449 -21.53781 -21.27803 -19.91661 -18.79738 -17.36452 -16.92722 -16.70556 -16.33795 -15.83317 -15.16888 -14.72250 -14.21599 -14.12058 -13.76521 -13.51282 -13.34280 -13.03330 -12.87012 -12.66844 -12.56713 -12.37632 -12.08958 -11.96522 -11.67669 -11.49166 -11.23839 -11.01619 -10.88936 -10.81346 -10.65557 -10.58461 -10.46736 -10.23038 -10.04936 -9.80325 -9.56451 -8.99660 -8.88752 -8.47710 -8.01021 -6.02017 -3.99927 2.28294 2.58726 3.28241 3.38079 3.40868 4.10131 4.44476 4.57737 4.74646 4.87355 4.97583 4.98598 5.05281 5.22180 5.22546 5.28322 5.34889 5.40328 5.46519 5.65040 5.67499 5.72105 5.81326 5.85851 5.87457 5.90384 5.94972 6.12855 6.15380 6.18565 6.27670 6.34143 6.41508 6.47810 6.53896 6.77080 6.87859 6.93145 7.27904 7.31019 7.49130 7.67512 7.83052 7.87255 8.59869 9.03435 9.60912 11.11709 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017926 B = 0.005257 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.581374 B = 5324.893794 C = 6239.413973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.117 4.117 4 C -0.114 4.114 5 C 0.093 3.907 6 H 0.073 0.927 7 C 0.465 3.535 8 O -0.480 6.480 9 O -0.365 6.365 10 C 0.037 3.963 11 N -0.512 5.512 12 C 0.052 3.948 13 C -0.092 4.092 14 C 0.012 3.988 15 C -0.508 4.508 16 H 0.073 0.927 17 C 0.068 3.932 18 N -0.904 5.904 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.299 1.299 22 H -0.267 1.267 23 C -0.115 4.115 24 C 0.052 3.948 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.024 0.976 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.021 0.979 42 H 0.262 0.738 43 H 0.070 0.930 44 H 0.049 0.951 45 H 0.028 0.972 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.422 -12.620 18.335 22.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.155 4.155 4 C -0.151 4.151 5 C -0.017 4.017 6 H 0.091 0.909 7 C 0.306 3.694 8 O -0.365 6.365 9 O -0.282 6.282 10 C -0.057 4.057 11 N -0.239 5.239 12 C -0.075 4.075 13 C -0.129 4.129 14 C -0.007 4.007 15 C -0.546 4.546 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.542 5.542 19 Si 0.717 3.283 20 H -0.205 1.205 21 H -0.226 1.226 22 H -0.192 1.192 23 C -0.152 4.152 24 C -0.075 4.075 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.042 0.958 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.046 0.954 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.648 -12.215 18.258 22.126 hybrid contribution 1.201 -0.776 -0.360 1.474 sum 3.849 -12.991 17.898 22.448 Atomic orbital electron populations 1.21760 0.95924 1.01189 1.02096 1.21531 0.95975 0.96990 1.01574 1.21616 0.93941 0.96386 1.03551 1.21748 0.97347 0.92649 1.03375 1.21216 0.98430 0.94615 0.87417 0.90904 1.23662 0.77883 0.82244 0.85639 1.90673 1.33780 1.24716 1.87321 1.86488 1.70287 1.56161 1.15233 1.23204 1.00254 0.98729 0.83554 1.61667 1.57791 1.02692 1.01710 1.22345 0.95203 0.89023 1.00964 1.21436 1.00638 0.96986 0.93879 1.19204 0.96061 0.91806 0.93594 1.21071 1.33125 1.09235 0.91140 0.90876 1.25031 0.94946 0.96814 0.96536 1.69908 1.43364 1.39117 1.01849 0.86856 0.80557 0.84168 0.76691 1.20546 1.22643 1.19247 1.22018 1.01104 0.97735 0.94377 1.22372 0.98716 0.97729 0.88644 0.93092 0.92961 0.92390 0.92072 0.92468 0.92576 0.89849 0.90050 0.90519 0.92061 0.91985 0.88383 0.95824 0.90805 0.92419 0.91608 0.96088 0.92794 0.91112 0.93243 0.95417 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.24 5.93 -26.73 -0.16 -1.40 16 3 C -0.12 -1.43 4.60 -26.73 -0.12 -1.55 16 4 C -0.11 -1.28 4.34 -26.73 -0.12 -1.39 16 5 C 0.09 1.26 2.32 -68.86 -0.16 1.10 16 6 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 7 C 0.46 6.62 5.69 36.00 0.20 6.83 16 8 O -0.48 -8.28 14.30 -18.75 -0.27 -8.55 16 9 O -0.36 -4.35 10.43 -39.25 -0.41 -4.76 16 10 C 0.04 0.33 10.56 101.05 1.07 1.40 16 11 N -0.51 -8.54 3.61 -228.08 -0.82 -9.36 16 12 C 0.05 0.92 5.11 -3.83 -0.02 0.91 16 13 C -0.09 -1.92 5.32 -26.65 -0.14 -2.06 16 14 C 0.01 0.29 1.75 -91.65 -0.16 0.13 16 15 C -0.51 -14.40 9.14 -34.44 -0.31 -14.72 16 16 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.07 1.96 5.45 -17.82 -0.10 1.87 16 18 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 19 Si 0.89 21.96 24.37 -169.99 -4.14 17.82 16 20 H -0.28 -6.66 6.89 56.52 0.39 -6.27 16 21 H -0.30 -7.46 7.11 56.52 0.40 -7.05 16 22 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 23 C -0.11 -2.45 4.84 -26.65 -0.13 -2.58 16 24 C 0.05 0.89 4.52 -3.83 -0.02 0.87 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.74 7.13 -51.93 -0.37 0.37 16 31 H 0.08 1.20 6.69 -51.93 -0.35 0.85 16 32 H 0.08 0.87 6.33 -51.93 -0.33 0.54 16 33 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 34 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 35 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 1.31 6.03 -51.93 -0.31 1.00 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.02 0.51 7.19 -51.93 -0.37 0.14 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 44 H 0.05 1.11 3.38 -51.93 -0.18 0.93 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.07 1.10 5.03 -51.93 -0.26 0.84 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -31.73 346.75 -7.55 -39.27 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -8.10 Total: -0.69 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 0.20 Total: -11.76 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: -0.05 Total: -36.55 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.68 Total: -13.31 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.14 Total: 17.82 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.73 -7.55 -39.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611687781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.920 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds