Wall clock time and date at job start Tue Mar 31 2020 05:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00174 * 2 1 4 4 C 1.52995 * 109.47411 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47034 * 64.99828 * 4 3 2 6 6 C 1.46498 * 119.99845 * 90.00468 * 5 4 3 7 7 C 1.50702 * 109.47014 * 269.99838 * 6 5 4 8 8 H 1.08007 * 119.99940 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00302 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99976 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00216 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47119 * 269.99749 * 11 9 7 13 13 H 1.48498 * 109.47572 * 30.00067 * 11 9 7 14 14 H 1.48497 * 109.47282 * 150.00216 * 11 9 7 15 15 C 1.34772 * 119.99885 * 269.99958 * 5 4 3 16 16 O 1.21285 * 119.99773 * 179.97438 * 15 5 4 17 17 C 1.50702 * 120.00336 * 0.02562 * 15 5 4 18 18 H 1.09002 * 115.54589 * 9.72078 * 17 15 5 19 19 C 1.52997 * 117.50111 * 155.39656 * 17 15 5 20 20 C 1.53000 * 60.00154 * 107.48528 * 19 17 15 21 21 C 1.53005 * 117.49928 * 107.48732 * 20 19 17 22 22 C 1.52993 * 117.50065 * 252.51004 * 20 19 17 23 23 C 1.53000 * 109.47200 * 128.86527 * 22 20 19 24 24 C 1.53002 * 109.47195 * 248.86438 * 22 20 19 25 25 H 1.08998 * 109.47028 * 300.00466 * 1 2 3 26 26 H 1.09006 * 109.47051 * 59.99869 * 1 2 3 27 27 H 1.08997 * 109.47130 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46986 * 59.99799 * 3 2 1 29 29 H 1.09001 * 109.46796 * 300.00233 * 3 2 1 30 30 H 1.09002 * 109.47178 * 305.00109 * 4 3 2 31 31 H 1.09000 * 109.47660 * 185.00154 * 4 3 2 32 32 H 1.08996 * 109.47184 * 149.99812 * 6 5 4 33 33 H 1.08998 * 109.47188 * 29.99496 * 6 5 4 34 34 H 0.97002 * 119.99523 * 359.97438 * 10 9 7 35 35 H 1.08999 * 117.49699 * 214.97737 * 19 17 15 36 36 H 1.08995 * 117.50103 * 359.97438 * 19 17 15 37 37 H 1.09009 * 109.46840 * 351.38074 * 21 20 19 38 38 H 1.08995 * 109.46909 * 111.37645 * 21 20 19 39 39 H 1.09002 * 109.47113 * 231.38287 * 21 20 19 40 40 H 1.08996 * 109.47468 * 8.86443 * 22 20 19 41 41 H 1.08995 * 109.46861 * 51.41937 * 23 22 20 42 42 H 1.09006 * 109.47291 * 171.41650 * 23 22 20 43 43 H 1.09000 * 109.47019 * 291.41464 * 23 22 20 44 44 H 1.08996 * 109.47061 * 292.07426 * 24 22 20 45 45 H 1.09000 * 109.47048 * 52.07670 * 24 22 20 46 46 H 1.09001 * 109.47335 * 172.07274 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2884 1.3997 -2.4130 7 6 3.0442 1.5925 -3.2413 8 1 2.1142 1.1382 -2.9326 9 6 3.0928 2.3497 -4.3924 10 7 4.2251 2.9033 -4.7680 11 14 1.5506 2.5892 -5.4187 12 1 1.4566 1.5068 -6.4311 13 1 0.3571 2.5465 -4.5361 14 1 1.6119 3.9047 -6.1049 15 6 4.0959 -0.7760 -1.3331 16 8 4.4608 -1.2899 -2.3693 17 6 3.7749 -1.6359 -0.1378 18 1 3.2986 -1.1215 0.6969 19 6 3.3650 -3.0863 -0.4006 20 6 4.7408 -2.7756 0.1924 21 6 4.9646 -3.1063 1.6694 22 6 5.9586 -2.9551 -0.7161 23 6 6.8119 -1.6856 -0.6820 24 6 6.7903 -4.1419 -0.2257 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1765 0.0902 32 1 5.0544 0.9124 -3.0161 33 1 4.6540 2.3695 -2.0755 34 1 5.0259 2.7792 -4.2349 35 1 2.6194 -3.5264 0.2615 36 1 3.3272 -3.4186 -1.4380 37 1 4.0164 -3.3910 2.1257 38 1 5.6708 -3.9322 1.7538 39 1 5.3657 -2.2314 2.1809 40 1 5.6259 -3.1418 -1.7371 41 1 7.0175 -1.4138 0.3533 42 1 7.7519 -1.8654 -1.2039 43 1 6.2744 -0.8733 -1.1712 44 1 7.2392 -3.8979 0.7371 45 1 6.1475 -5.0154 -0.1159 46 1 7.5766 -4.3582 -0.9489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613950625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:30 Heat of formation + Delta-G solvation = -66.760656 kcal Electronic energy + Delta-G solvation = -24550.997302 eV Core-core repulsion = 21248.549566 eV Total energy + Delta-G solvation = -3302.447736 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.03183 -37.85873 -36.98502 -34.79792 -33.22690 -32.75776 -29.41638 -28.64614 -26.92557 -26.69605 -26.01743 -23.87471 -22.48813 -22.29602 -21.80009 -18.86130 -17.66905 -17.00766 -16.78550 -16.11127 -15.38549 -15.16013 -15.01833 -14.49003 -14.02193 -13.74457 -13.72156 -13.55808 -13.12001 -12.75916 -12.67672 -12.29921 -12.27150 -12.05133 -11.77634 -11.68725 -11.49296 -11.43663 -11.21717 -10.97188 -10.88388 -10.84365 -10.66998 -10.52701 -10.32584 -10.12791 -9.67802 -9.36092 -9.28435 -9.04625 -8.71586 -8.34944 -7.54286 -6.34216 -4.05636 3.23072 3.43104 3.47409 3.61520 3.89331 4.13328 4.34807 4.55034 4.85654 4.98166 5.11765 5.23058 5.37248 5.38550 5.40963 5.45863 5.49011 5.55894 5.59794 5.65886 5.70691 5.78204 5.84563 5.88119 5.88922 5.93350 5.94050 6.03891 6.05894 6.14738 6.19856 6.23440 6.33639 6.44199 6.53301 6.69547 6.79831 6.86964 7.19220 7.39845 7.58072 8.09622 8.41570 8.51026 8.82921 9.21539 9.63781 11.02415 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016793 B = 0.006104 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.919096 B = 4586.241196 C = 5481.091248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.038 3.962 4 C 0.119 3.881 5 N -0.592 5.592 6 C 0.237 3.763 7 C -0.598 4.598 8 H 0.053 0.947 9 C 0.018 3.982 10 N -0.912 5.912 11 Si 1.072 2.928 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.284 1.284 15 C 0.553 3.447 16 O -0.544 6.544 17 C -0.168 4.168 18 H 0.122 0.878 19 C -0.140 4.140 20 C -0.100 4.100 21 C -0.117 4.117 22 C -0.060 4.060 23 C -0.146 4.146 24 C -0.142 4.142 25 H 0.033 0.967 26 H 0.040 0.960 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.033 0.967 33 H 0.018 0.982 34 H 0.267 0.733 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.425 -8.365 15.163 17.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C -0.040 4.040 4 C -0.005 4.005 5 N -0.323 5.323 6 C 0.117 3.883 7 C -0.637 4.637 8 H 0.071 0.929 9 C -0.186 4.186 10 N -0.549 5.549 11 Si 0.900 3.100 12 H -0.214 1.214 13 H -0.217 1.217 14 H -0.210 1.210 15 C 0.342 3.658 16 O -0.422 6.422 17 C -0.189 4.189 18 H 0.139 0.861 19 C -0.177 4.177 20 C -0.101 4.101 21 C -0.174 4.174 22 C -0.078 4.078 23 C -0.204 4.204 24 C -0.199 4.199 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.051 0.949 33 H 0.036 0.964 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.687 -8.035 13.227 15.568 hybrid contribution 0.044 -0.247 1.447 1.469 sum -1.643 -8.282 14.674 16.930 Atomic orbital electron populations 1.22639 0.81966 1.02022 0.99543 1.87893 1.18909 1.27836 1.95341 1.23149 0.94837 0.85121 1.00861 1.21477 0.92276 0.99166 0.87604 1.47822 1.65548 1.05961 1.12924 1.19316 0.97389 0.88559 0.83043 1.22292 0.95989 1.34860 1.10586 0.92900 1.25752 1.03040 0.93560 0.96230 1.70769 1.00409 1.42978 1.40703 0.83504 0.74080 0.76648 0.75739 1.21418 1.21720 1.21009 1.19185 0.76742 0.82091 0.87797 1.90627 1.47681 1.72641 1.31254 1.22482 1.05114 0.90967 1.00304 0.86053 1.23070 0.96499 0.95885 1.02282 1.21520 0.91490 1.01281 0.95802 1.21442 1.01681 1.01509 0.92753 1.20654 0.92876 0.94936 0.99358 1.21890 0.99421 0.98386 1.00660 1.21884 0.99452 0.97927 1.00667 0.94838 0.94116 0.90275 0.93724 0.90956 0.90838 0.89570 0.94920 0.96424 0.92235 0.88911 0.88239 0.92671 0.91455 0.92519 0.89440 0.93644 0.93251 0.91560 0.92866 0.92836 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 11.01 101.05 1.11 1.59 16 2 O -0.38 -6.35 8.13 -35.23 -0.29 -6.64 16 3 C 0.04 0.62 6.28 37.16 0.23 0.85 16 4 C 0.12 2.00 5.73 -4.04 -0.02 1.98 16 5 N -0.59 -12.75 2.44 -175.06 -0.43 -13.17 16 6 C 0.24 6.14 4.52 -5.19 -0.02 6.12 16 7 C -0.60 -17.03 8.82 -34.44 -0.30 -17.33 16 8 H 0.05 1.54 7.23 -52.48 -0.38 1.16 16 9 C 0.02 0.53 5.46 -17.82 -0.10 0.43 16 10 N -0.91 -27.87 13.65 55.43 0.76 -27.11 16 11 Si 1.07 25.91 29.90 -169.99 -5.08 20.83 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.55 11.89 4.69 -10.99 -0.05 11.84 16 16 O -0.54 -13.74 13.11 5.55 0.07 -13.66 16 17 C -0.17 -2.83 4.12 -91.77 -0.38 -3.20 16 18 H 0.12 1.92 5.04 -51.93 -0.26 1.66 16 19 C -0.14 -2.15 9.34 -26.73 -0.25 -2.40 16 20 C -0.10 -1.44 1.89 -154.51 -0.29 -1.73 16 21 C -0.12 -1.30 9.53 37.16 0.35 -0.95 16 22 C -0.06 -0.92 2.22 -90.62 -0.20 -1.12 16 23 C -0.15 -2.36 8.71 37.16 0.32 -2.04 16 24 C -0.14 -1.71 7.91 37.16 0.29 -1.41 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.40 6.95 -51.93 -0.36 1.04 16 30 H 0.07 1.06 6.17 -51.93 -0.32 0.74 16 31 H 0.09 1.33 7.89 -51.93 -0.41 0.92 16 32 H 0.03 0.95 7.29 -51.93 -0.38 0.57 16 33 H 0.02 0.46 7.76 -51.93 -0.40 0.05 16 34 H 0.27 8.12 7.22 -40.82 -0.29 7.83 16 35 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 36 H 0.10 1.72 7.79 -51.93 -0.40 1.32 16 37 H 0.05 0.56 7.90 -51.92 -0.41 0.15 16 38 H 0.07 0.67 5.73 -51.93 -0.30 0.37 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 1.61 6.65 -51.93 -0.35 1.26 16 41 H 0.04 0.65 8.13 -51.93 -0.42 0.22 16 42 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 43 H 0.07 1.30 4.99 -51.93 -0.26 1.04 16 44 H 0.05 0.57 6.98 -51.93 -0.36 0.21 16 45 H 0.05 0.59 8.07 -51.93 -0.42 0.17 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -33.06 355.60 -6.81 -39.87 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.90 Total: 1.92 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 0.70 Total: -7.38 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.33 Total: -40.29 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.21 Total: -20.30 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.08 Total: 20.83 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.06 -6.81 -39.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613950625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.890 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds