Wall clock time and date at job start Tue Mar 31 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00174 * 2 1 4 4 C 1.52995 * 109.47411 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47034 * 64.99828 * 4 3 2 6 6 C 1.46498 * 119.99845 * 90.00468 * 5 4 3 7 7 C 1.50702 * 109.47014 * 269.99838 * 6 5 4 8 8 H 1.08007 * 119.99940 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00302 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99976 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00216 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47119 * 269.99749 * 11 9 7 13 13 H 1.48498 * 109.47572 * 30.00067 * 11 9 7 14 14 H 1.48497 * 109.47282 * 150.00216 * 11 9 7 15 15 C 1.34772 * 119.99885 * 269.99958 * 5 4 3 16 16 O 1.21285 * 119.99773 * 179.97438 * 15 5 4 17 17 C 1.50702 * 120.00336 * 0.02562 * 15 5 4 18 18 H 1.09002 * 115.54589 * 9.72078 * 17 15 5 19 19 C 1.52997 * 117.50111 * 155.39656 * 17 15 5 20 20 C 1.53000 * 60.00154 * 107.48528 * 19 17 15 21 21 C 1.53005 * 117.49928 * 107.48732 * 20 19 17 22 22 C 1.52993 * 117.50065 * 252.51004 * 20 19 17 23 23 C 1.53000 * 109.47200 * 128.86527 * 22 20 19 24 24 C 1.53002 * 109.47195 * 248.86438 * 22 20 19 25 25 H 1.08998 * 109.47028 * 300.00466 * 1 2 3 26 26 H 1.09006 * 109.47051 * 59.99869 * 1 2 3 27 27 H 1.08997 * 109.47130 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46986 * 59.99799 * 3 2 1 29 29 H 1.09001 * 109.46796 * 300.00233 * 3 2 1 30 30 H 1.09002 * 109.47178 * 305.00109 * 4 3 2 31 31 H 1.09000 * 109.47660 * 185.00154 * 4 3 2 32 32 H 1.08996 * 109.47184 * 149.99812 * 6 5 4 33 33 H 1.08998 * 109.47188 * 29.99496 * 6 5 4 34 34 H 0.97002 * 119.99523 * 359.97438 * 10 9 7 35 35 H 1.08999 * 117.49699 * 214.97737 * 19 17 15 36 36 H 1.08995 * 117.50103 * 359.97438 * 19 17 15 37 37 H 1.09009 * 109.46840 * 351.38074 * 21 20 19 38 38 H 1.08995 * 109.46909 * 111.37645 * 21 20 19 39 39 H 1.09002 * 109.47113 * 231.38287 * 21 20 19 40 40 H 1.08996 * 109.47468 * 8.86443 * 22 20 19 41 41 H 1.08995 * 109.46861 * 51.41937 * 23 22 20 42 42 H 1.09006 * 109.47291 * 171.41650 * 23 22 20 43 43 H 1.09000 * 109.47019 * 291.41464 * 23 22 20 44 44 H 1.08996 * 109.47061 * 292.07426 * 24 22 20 45 45 H 1.09000 * 109.47048 * 52.07670 * 24 22 20 46 46 H 1.09001 * 109.47335 * 172.07274 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.2884 1.3997 -2.4130 7 6 3.0442 1.5925 -3.2413 8 1 2.1142 1.1382 -2.9326 9 6 3.0928 2.3497 -4.3924 10 7 4.2251 2.9033 -4.7680 11 14 1.5506 2.5892 -5.4187 12 1 1.4566 1.5068 -6.4311 13 1 0.3571 2.5465 -4.5361 14 1 1.6119 3.9047 -6.1049 15 6 4.0959 -0.7760 -1.3331 16 8 4.4608 -1.2899 -2.3693 17 6 3.7749 -1.6359 -0.1378 18 1 3.2986 -1.1215 0.6969 19 6 3.3650 -3.0863 -0.4006 20 6 4.7408 -2.7756 0.1924 21 6 4.9646 -3.1063 1.6694 22 6 5.9586 -2.9551 -0.7161 23 6 6.8119 -1.6856 -0.6820 24 6 6.7903 -4.1419 -0.2257 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1765 0.0902 32 1 5.0544 0.9124 -3.0161 33 1 4.6540 2.3695 -2.0755 34 1 5.0259 2.7792 -4.2349 35 1 2.6194 -3.5264 0.2615 36 1 3.3272 -3.4186 -1.4380 37 1 4.0164 -3.3910 2.1257 38 1 5.6708 -3.9322 1.7538 39 1 5.3657 -2.2314 2.1809 40 1 5.6259 -3.1418 -1.7371 41 1 7.0175 -1.4138 0.3533 42 1 7.7519 -1.8654 -1.2039 43 1 6.2744 -0.8733 -1.1712 44 1 7.2392 -3.8979 0.7371 45 1 6.1475 -5.0154 -0.1159 46 1 7.5766 -4.3582 -0.9489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613950625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:29 Heat of formation + Delta-G solvation = -87.460455 kcal Electronic energy + Delta-G solvation = -24551.894913 eV Core-core repulsion = 21248.549566 eV Total energy + Delta-G solvation = -3303.345347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.50916 -39.17601 -38.39939 -36.55330 -35.01398 -34.30411 -30.94953 -29.78630 -28.73592 -27.78826 -27.16385 -25.75836 -24.03182 -23.52591 -23.36178 -20.28245 -19.13113 -19.05736 -18.26676 -17.43346 -16.86103 -16.51954 -16.35728 -15.81226 -15.74366 -15.40754 -15.20893 -14.89200 -14.54078 -14.09774 -13.94683 -13.60496 -13.53637 -13.48509 -13.33249 -13.26681 -12.97201 -12.78541 -12.59057 -12.43948 -12.40201 -12.15123 -12.04142 -11.99168 -11.92593 -11.54930 -11.15088 -10.91040 -10.63592 -10.60736 -10.49657 -10.36655 -9.41223 -8.66702 -6.41897 1.44395 1.53794 1.70226 1.72197 2.29053 2.51216 2.93400 3.01973 3.10206 3.61105 3.77859 3.96038 3.97056 4.11549 4.18505 4.23459 4.37598 4.43046 4.44537 4.53231 4.57664 4.59270 4.65399 4.73089 4.76746 4.81641 4.85017 4.87793 4.94296 4.97233 5.00532 5.03315 5.05922 5.17366 5.21702 5.25320 5.39573 5.43625 5.63660 5.66226 5.85381 6.18043 6.29530 6.47604 6.77768 7.33018 7.56145 8.66706 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016793 B = 0.006104 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.919096 B = 4586.241196 C = 5481.091248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.399 6.399 3 C 0.044 3.956 4 C 0.111 3.889 5 N -0.598 5.598 6 C 0.251 3.749 7 C -0.601 4.601 8 H 0.042 0.958 9 C -0.033 4.033 10 N -0.934 5.934 11 Si 1.117 2.883 12 H -0.284 1.284 13 H -0.269 1.269 14 H -0.274 1.274 15 C 0.547 3.453 16 O -0.596 6.596 17 C -0.177 4.177 18 H 0.141 0.859 19 C -0.140 4.140 20 C -0.080 4.080 21 C -0.113 4.113 22 C -0.064 4.064 23 C -0.142 4.142 24 C -0.134 4.134 25 H 0.062 0.938 26 H 0.022 0.978 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.032 0.968 30 H 0.106 0.894 31 H 0.097 0.903 32 H -0.011 1.011 33 H 0.017 0.983 34 H 0.255 0.745 35 H 0.126 0.874 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.024 0.976 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.616 -9.439 18.519 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.319 6.319 3 C -0.034 4.034 4 C -0.012 4.012 5 N -0.328 5.328 6 C 0.129 3.871 7 C -0.640 4.640 8 H 0.060 0.940 9 C -0.231 4.231 10 N -0.571 5.571 11 Si 0.938 3.062 12 H -0.210 1.210 13 H -0.194 1.194 14 H -0.199 1.199 15 C 0.338 3.662 16 O -0.479 6.479 17 C -0.198 4.198 18 H 0.158 0.842 19 C -0.177 4.177 20 C -0.081 4.081 21 C -0.169 4.169 22 C -0.082 4.082 23 C -0.200 4.200 24 C -0.191 4.191 25 H 0.081 0.919 26 H 0.041 0.959 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.051 0.949 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.007 0.993 33 H 0.034 0.966 34 H 0.064 0.936 35 H 0.144 0.856 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.888 -9.106 16.641 19.189 hybrid contribution 0.448 0.062 0.400 0.604 sum -2.440 -9.045 17.042 19.447 Atomic orbital electron populations 1.22812 0.80390 1.03298 1.00055 1.87855 1.20675 1.27868 1.95453 1.23036 0.94181 0.85227 1.00914 1.21840 0.93042 1.00133 0.86135 1.47844 1.65664 1.06061 1.13196 1.18818 0.95309 0.88585 0.84375 1.22495 0.96217 1.34229 1.11014 0.93971 1.27243 1.05126 0.93088 0.97634 1.70893 1.00709 1.44491 1.41020 0.82944 0.71405 0.77033 0.74796 1.21028 1.19365 1.19920 1.20042 0.75346 0.82159 0.88680 1.90597 1.49929 1.73580 1.33754 1.22388 1.07749 0.90977 0.98654 0.84187 1.23138 0.98454 0.94544 1.01558 1.21710 0.90230 0.98276 0.97889 1.21499 1.03343 1.02623 0.89461 1.20632 0.93929 0.95971 0.97709 1.21837 0.99034 0.97527 1.01558 1.21826 0.99116 0.96587 1.01585 0.91907 0.95946 0.88716 0.89481 0.94921 0.87598 0.88516 0.99335 0.96551 0.93603 0.85569 0.91282 0.90834 0.89716 0.91476 0.93769 0.91186 0.93159 0.95714 0.90561 0.91550 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -12.56 8.13 -148.98 -1.21 -13.77 16 3 C 0.04 1.37 6.28 71.98 0.45 1.82 16 4 C 0.11 3.61 5.73 86.38 0.49 4.11 16 5 N -0.60 -26.59 2.44 -826.16 -2.02 -28.60 16 6 C 0.25 13.80 4.52 85.63 0.39 14.19 16 7 C -0.60 -35.63 8.82 25.60 0.23 -35.41 16 8 H 0.04 2.55 7.23 -2.91 -0.02 2.52 16 9 C -0.03 -1.97 5.46 84.65 0.46 -1.51 16 10 N -0.93 -59.16 13.65 21.45 0.29 -58.87 16 11 Si 1.12 52.84 29.90 68.60 2.05 54.89 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 14 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 15 C 0.55 24.32 4.69 87.66 0.41 24.74 16 16 O -0.60 -32.34 13.11 -3.04 -0.04 -32.38 16 17 C -0.18 -5.76 4.12 -11.54 -0.05 -5.81 16 18 H 0.14 4.00 5.04 -2.39 -0.01 3.99 16 19 C -0.14 -4.11 9.34 30.59 0.29 -3.82 16 20 C -0.08 -2.14 1.89 -52.18 -0.10 -2.24 16 21 C -0.11 -1.97 9.53 71.98 0.69 -1.28 16 22 C -0.06 -1.93 2.22 -10.80 -0.02 -1.96 16 23 C -0.14 -4.64 8.71 71.98 0.63 -4.01 16 24 C -0.13 -2.91 7.91 71.98 0.57 -2.34 16 25 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.03 1.27 6.95 -2.39 -0.02 1.26 16 30 H 0.11 2.76 6.17 -2.39 -0.01 2.74 16 31 H 0.10 2.89 7.89 -2.39 -0.02 2.88 16 32 H -0.01 -0.72 7.29 -2.39 -0.02 -0.74 16 33 H 0.02 0.90 7.76 -2.39 -0.02 0.88 16 34 H 0.25 16.34 7.22 -92.71 -0.67 15.67 16 35 H 0.13 2.84 8.05 -2.39 -0.02 2.82 16 36 H 0.07 2.47 7.79 -2.39 -0.02 2.45 16 37 H 0.07 1.07 7.90 -2.38 -0.02 1.05 16 38 H 0.08 1.23 5.73 -2.39 -0.01 1.22 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.04 1.72 6.65 -2.39 -0.02 1.70 16 41 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 42 H 0.05 1.56 8.13 -2.38 -0.02 1.55 16 43 H 0.02 1.00 4.99 -2.39 -0.01 0.99 16 44 H 0.08 1.33 6.98 -2.39 -0.02 1.31 16 45 H 0.07 1.28 8.07 -2.39 -0.02 1.26 16 46 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -77.97 355.60 5.80 -72.17 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 1.04 Total: 18.08 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 5.68 Total: -11.52 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -1.72 Total: -87.47 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -1.25 Total: -46.15 kcal Atomic # 14 Polarization: 52.84 SS G_CDS: 2.05 Total: 54.89 kcal Total: -77.97 5.80 -72.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613950625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.286 kcal (2) G-P(sol) polarization free energy of solvation -77.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds