Wall clock time and date at job start Tue Mar 31 2020 05:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47212 * 2 1 4 4 C 1.53001 * 109.47305 * 61.02918 * 3 2 1 5 5 C 1.53000 * 109.47327 * 181.02980 * 3 2 1 6 6 N 1.46504 * 109.47136 * 301.03267 * 3 2 1 7 7 C 1.46497 * 120.00292 * 123.35975 * 6 3 2 8 8 C 1.50699 * 109.47040 * 95.29729 * 7 6 3 9 9 H 1.07999 * 120.00077 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00001 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00049 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00029 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47335 * 59.99683 * 12 10 8 14 14 H 1.48501 * 109.47302 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.47235 * 299.99969 * 12 10 8 16 16 C 1.34777 * 119.99626 * 303.35747 * 6 3 2 17 17 O 1.21281 * 120.00304 * 6.97811 * 16 6 3 18 18 C 1.50699 * 119.99934 * 186.97085 * 16 6 3 19 19 C 1.52998 * 113.00194 * 183.44221 * 18 16 6 20 20 C 1.53000 * 109.47395 * 180.02562 * 19 18 16 21 21 C 1.54040 * 113.81500 * 51.45618 * 18 16 6 22 22 O 1.44175 * 85.51800 * 268.35047 * 21 18 16 23 23 C 1.44181 * 93.34186 * 335.80763 * 22 21 18 24 24 H 1.08997 * 109.47209 * 64.80605 * 1 2 3 25 25 H 1.09008 * 109.47142 * 184.80427 * 1 2 3 26 26 H 1.08996 * 109.47023 * 304.80369 * 1 2 3 27 27 H 1.09000 * 109.47023 * 239.99796 * 2 1 3 28 28 H 1.09004 * 109.47328 * 120.00146 * 2 1 3 29 29 H 1.08996 * 109.47023 * 59.99912 * 4 3 2 30 30 H 1.08991 * 109.47542 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47041 * 300.00206 * 4 3 2 32 32 H 1.08999 * 109.47058 * 60.00020 * 5 3 2 33 33 H 1.09000 * 109.47276 * 179.97438 * 5 3 2 34 34 H 1.08996 * 109.46947 * 300.00055 * 5 3 2 35 35 H 1.09000 * 109.47056 * 215.29404 * 7 6 3 36 36 H 1.09004 * 109.47133 * 335.29924 * 7 6 3 37 37 H 0.97001 * 119.99957 * 180.02562 * 11 10 8 38 38 H 1.09002 * 109.47143 * 300.00322 * 19 18 16 39 39 H 1.09001 * 109.47248 * 59.99679 * 19 18 16 40 40 H 1.08997 * 109.47465 * 59.99883 * 20 19 18 41 41 H 1.08997 * 109.47135 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.46819 * 300.00007 * 20 19 18 43 43 H 1.08998 * 113.86574 * 22.50126 * 21 18 16 44 44 H 1.09001 * 113.86365 * 154.20649 * 21 18 16 45 45 H 1.09000 * 113.86295 * 270.04189 * 23 22 21 46 46 H 1.09001 * 113.98517 * 138.34935 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5513 2.1562 1.2620 5 6 3.5698 1.4425 -0.0259 6 7 1.5315 2.1402 -1.1836 7 6 0.7534 3.3719 -1.0298 8 6 1.6656 4.5632 -1.1710 9 1 2.7195 4.4173 -1.3562 10 6 1.1548 5.8393 -1.0626 11 7 -0.1285 6.0169 -0.8365 12 14 2.2856 7.3159 -1.2368 13 1 2.9216 7.2968 -2.5787 14 1 1.4969 8.5645 -1.0811 15 1 3.3373 7.2603 -0.1898 16 6 1.7795 1.6489 -2.4138 17 8 2.3123 0.5666 -2.5386 18 6 1.3947 2.4444 -3.6345 19 6 1.6721 1.7026 -4.9435 20 6 1.2540 2.5797 -6.1254 21 6 1.9089 3.8964 -3.6183 22 8 0.6458 4.2173 -3.0016 23 6 -0.0144 3.0617 -3.5561 24 1 -0.3633 0.4374 -0.9299 25 1 -0.3634 -1.0241 0.0861 26 1 -0.3633 0.5865 0.8438 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.9296 1.6371 2.1426 30 1 1.9142 3.1839 1.2618 31 1 0.4615 2.1562 1.2805 32 1 3.9180 0.9341 -0.9250 33 1 3.9331 2.4702 -0.0264 34 1 3.9481 0.9234 0.8547 35 1 -0.0185 3.4124 -1.7983 36 1 0.2867 3.3864 -0.0448 37 1 -0.4879 6.9147 -0.7606 38 1 2.7365 1.4791 -5.0160 39 1 1.1037 0.7727 -4.9617 40 1 1.8227 3.5093 -6.1071 41 1 1.4512 2.0509 -7.0579 42 1 0.1896 2.8034 -6.0531 43 1 2.7695 4.0522 -2.9678 44 1 2.0380 4.3296 -4.6101 45 1 -0.4726 3.2401 -4.5289 46 1 -0.6799 2.5540 -2.8578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787944618.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:51 Heat of formation + Delta-G solvation = 25.655456 kcal Electronic energy + Delta-G solvation = -26064.914696 eV Core-core repulsion = 22766.474423 eV Total energy + Delta-G solvation = -3298.440273 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.22060 -38.51912 -36.30493 -33.65615 -32.71995 -31.82121 -29.88872 -27.92881 -27.33809 -26.51380 -25.97917 -23.44511 -23.08539 -22.35173 -21.45500 -18.63205 -17.31636 -16.50642 -16.12939 -15.75601 -15.34836 -14.82074 -14.59980 -14.43634 -14.14625 -13.87328 -13.41547 -13.31901 -12.80909 -12.58309 -12.17934 -12.06036 -11.83637 -11.65834 -11.64263 -11.44939 -11.32433 -11.11625 -10.95436 -10.92415 -10.75022 -10.61644 -10.36119 -10.24213 -10.17895 -9.88092 -9.80713 -9.50307 -9.16135 -8.53073 -8.23664 -7.69209 -7.47464 -5.93903 -3.83722 3.31024 3.33100 3.36819 3.41002 3.95877 4.46819 4.67548 5.03382 5.13785 5.32476 5.37675 5.43642 5.51745 5.56930 5.63479 5.77172 5.80223 5.92338 6.00312 6.06151 6.09432 6.10875 6.19060 6.21761 6.28798 6.32189 6.33986 6.46920 6.49520 6.52557 6.63141 6.65699 6.68900 6.77265 6.87507 6.92129 7.03453 7.13998 7.25070 7.65309 7.86744 7.96990 8.32433 8.52729 8.99767 9.15129 9.63946 11.14773 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013590 B = 0.010153 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.778384 B = 2757.112526 C = 3975.599787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.177 3.823 4 C -0.148 4.148 5 C -0.155 4.155 6 N -0.578 5.578 7 C 0.202 3.798 8 C -0.482 4.482 9 H 0.052 0.948 10 C 0.077 3.923 11 N -0.882 5.882 12 Si 0.876 3.124 13 H -0.278 1.278 14 H -0.289 1.289 15 H -0.281 1.281 16 C 0.540 3.460 17 O -0.570 6.570 18 C -0.146 4.146 19 C -0.096 4.096 20 C -0.157 4.157 21 C 0.050 3.950 22 O -0.267 6.267 23 C 0.002 3.998 24 H 0.051 0.949 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.026 0.974 37 H 0.258 0.742 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.216 -6.805 -2.942 7.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.092 3.908 4 C -0.206 4.206 5 C -0.214 4.214 6 N -0.308 5.308 7 C 0.084 3.916 8 C -0.520 4.520 9 H 0.071 0.929 10 C -0.125 4.125 11 N -0.522 5.522 12 Si 0.704 3.296 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.207 1.207 16 C 0.328 3.672 17 O -0.452 6.452 18 C -0.149 4.149 19 C -0.134 4.134 20 C -0.214 4.214 21 C -0.027 4.027 22 O -0.184 6.184 23 C -0.075 4.075 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.044 0.956 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.238 -6.976 -2.756 7.602 hybrid contribution 0.666 0.951 -0.164 1.172 sum 1.904 -6.025 -2.920 6.961 Atomic orbital electron populations 1.21707 0.96265 1.00158 1.01898 1.22029 0.95963 0.96767 1.02821 1.20206 0.93084 0.91373 0.86111 1.22115 1.01707 1.01739 0.95005 1.22127 0.95537 1.02028 1.01659 1.48407 1.52285 1.26632 1.03446 1.21069 0.92862 0.78479 0.99231 1.21215 0.93556 0.90883 1.46368 0.92949 1.24633 0.94579 0.97801 0.95515 1.69861 1.11525 1.21656 1.49121 0.86926 0.80968 0.83158 0.78504 1.20404 1.21472 1.20740 1.19591 0.78533 0.84988 0.84120 1.90495 1.46020 1.21846 1.86835 1.23764 0.99123 0.97618 0.94432 1.21161 1.01822 0.98114 0.92316 1.21995 1.01750 1.00160 0.97480 1.23861 0.93153 0.88791 0.96849 1.91315 1.20540 1.46641 1.59946 1.24077 0.93430 0.91589 0.98367 0.92992 0.93889 0.92816 0.89235 0.92714 0.93120 0.90485 0.91847 0.91800 0.92324 0.93032 0.88854 0.95611 0.93165 0.91643 0.91866 0.92229 0.93041 0.92320 0.88378 0.91986 0.91342 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.47 37.16 0.35 -1.95 16 2 C -0.14 -2.33 4.69 -26.73 -0.13 -2.45 16 3 C 0.18 3.24 0.73 -131.82 -0.10 3.14 16 4 C -0.15 -2.61 6.82 37.16 0.25 -2.36 16 5 C -0.16 -2.75 8.45 37.16 0.31 -2.44 16 6 N -0.58 -11.64 1.71 -160.18 -0.27 -11.92 16 7 C 0.20 4.54 3.96 -5.20 -0.02 4.52 16 8 C -0.48 -11.68 5.04 -34.44 -0.17 -11.85 16 9 H 0.05 1.30 6.18 -52.49 -0.32 0.98 16 10 C 0.08 1.97 4.44 -17.82 -0.08 1.89 16 11 N -0.88 -23.78 13.17 55.43 0.73 -23.05 16 12 Si 0.88 20.34 29.54 -169.99 -5.02 15.32 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 C 0.54 10.91 6.33 -10.99 -0.07 10.84 16 17 O -0.57 -12.18 12.58 5.56 0.07 -12.11 16 18 C -0.15 -2.66 1.35 -154.58 -0.21 -2.87 16 19 C -0.10 -1.51 5.11 -26.73 -0.14 -1.64 16 20 C -0.16 -2.06 9.14 37.16 0.34 -1.72 16 21 C 0.05 0.97 6.92 37.61 0.26 1.23 16 22 O -0.27 -5.80 5.97 -35.23 -0.21 -6.01 16 23 C 0.00 0.03 7.04 37.61 0.26 0.30 16 24 H 0.05 0.92 7.65 -51.93 -0.40 0.52 16 25 H 0.04 0.61 8.14 -51.92 -0.42 0.18 16 26 H 0.05 0.84 6.21 -51.93 -0.32 0.52 16 27 H 0.09 1.69 5.77 -51.93 -0.30 1.39 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.53 7.41 -51.93 -0.38 1.14 16 31 H 0.06 1.14 5.30 -51.93 -0.28 0.86 16 32 H 0.06 1.21 6.67 -51.93 -0.35 0.86 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 2.19 2.57 -57.61 -0.15 2.04 16 36 H 0.03 0.63 5.48 -51.93 -0.28 0.34 16 37 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.79 6.08 -51.93 -0.32 0.47 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.75 6.07 -51.93 -0.32 0.44 16 43 H 0.10 2.07 5.55 -51.93 -0.29 1.78 16 44 H 0.06 1.08 5.84 -51.93 -0.30 0.77 16 45 H 0.07 1.11 5.83 -51.93 -0.30 0.81 16 46 H 0.08 1.54 6.83 -51.93 -0.35 1.18 16 LS Contribution 326.67 15.07 4.92 4.92 Total: -1.00 -26.78 326.67 -6.09 -32.86 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.18 Total: 5.35 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 0.87 Total: -5.35 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.46 Total: -34.97 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.14 Total: -18.13 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.78 -6.09 -32.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787944618.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.519 kcal (2) G-P(sol) polarization free energy of solvation -26.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds