Wall clock time and date at job start Tue Mar 31 2020 06:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34221 * 117.00098 * 2 1 4 4 O 1.20827 * 120.00150 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00291 * 180.02562 * 3 2 1 6 6 H 1.09006 * 110.53692 * 57.38783 * 5 3 2 7 7 C 1.54265 * 110.48496 * 294.77883 * 5 3 2 8 8 C 1.53877 * 106.59605 * 217.70899 * 7 5 3 9 9 C 1.54463 * 106.68421 * 0.15594 * 8 7 5 10 10 H 1.09003 * 110.40626 * 264.75463 * 9 8 7 11 11 N 1.46900 * 110.65967 * 142.05489 * 9 8 7 12 12 C 1.46900 * 111.00339 * 90.23953 * 11 9 8 13 13 C 1.53001 * 109.47330 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47165 * 299.99786 * 13 12 11 15 15 C 1.53003 * 109.47060 * 60.00011 * 13 12 11 16 16 C 1.53002 * 109.46867 * 179.97438 * 13 12 11 17 17 C 1.50703 * 109.46841 * 180.02562 * 16 13 12 18 18 H 1.07998 * 120.00092 * 359.97438 * 17 16 13 19 19 C 1.37875 * 119.99723 * 180.02562 * 17 16 13 20 20 N 1.31510 * 120.00395 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99557 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47702 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.46806 * 119.99702 * 21 19 17 24 24 H 1.48497 * 109.47150 * 239.99221 * 21 19 17 25 25 C 1.54887 * 110.48805 * 179.97438 * 5 3 2 26 26 H 1.09002 * 109.46960 * 299.99747 * 1 2 3 27 27 H 1.08993 * 109.47621 * 59.99984 * 1 2 3 28 28 H 1.09004 * 109.47429 * 180.02562 * 1 2 3 29 29 H 1.08995 * 110.03137 * 336.98824 * 7 5 3 30 30 H 1.08993 * 110.03408 * 98.42557 * 7 5 3 31 31 H 1.08999 * 110.03493 * 119.28247 * 8 7 5 32 32 H 1.09003 * 110.03187 * 240.66884 * 8 7 5 33 33 H 1.00907 * 111.00213 * 214.18949 * 11 9 8 34 34 H 1.09002 * 109.46812 * 300.00257 * 12 11 9 35 35 H 1.09001 * 109.46940 * 59.99648 * 12 11 9 36 36 H 1.09000 * 109.46912 * 60.00275 * 14 13 12 37 37 H 1.08994 * 109.46831 * 179.97438 * 14 13 12 38 38 H 1.09001 * 109.47044 * 300.00357 * 14 13 12 39 39 H 1.09002 * 109.47142 * 59.99748 * 15 13 12 40 40 H 1.08994 * 109.46807 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.46826 * 299.99658 * 15 13 12 42 42 H 1.08995 * 109.46890 * 299.99709 * 16 13 12 43 43 H 1.08996 * 109.47408 * 60.00452 * 16 13 12 44 44 H 0.96995 * 120.00269 * 180.02562 * 20 19 17 45 45 H 1.09002 * 110.75856 * 274.93801 * 25 5 3 46 46 H 1.09006 * 110.75640 * 38.12787 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9767 0.7456 -0.8607 7 6 4.1377 0.6980 1.3111 8 6 5.3400 1.5796 1.6920 9 6 5.4568 2.6660 0.6002 10 1 6.1746 2.3631 -0.1622 11 7 5.8447 3.9542 1.1903 12 6 7.3061 4.1002 1.2215 13 6 7.6705 5.4505 1.8418 14 6 7.0633 6.5773 1.0037 15 6 7.1203 5.5219 3.2677 16 6 9.1927 5.6023 1.8749 17 6 9.5517 6.9321 2.4865 18 1 8.7722 7.6021 2.8180 19 6 10.8752 7.2937 2.6218 20 7 11.8244 6.4781 2.2178 21 14 11.3202 8.9423 3.3792 22 1 10.0787 9.6688 3.7484 23 1 12.1453 8.7222 4.5942 24 1 12.0903 9.7466 2.3969 25 6 4.0317 2.7521 -0.0011 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.3827 0.7370 2.0962 30 1 4.4632 -0.3306 1.1561 31 1 5.1685 2.0463 2.6619 32 1 6.2489 0.9786 1.7226 33 1 5.4151 4.7221 0.6965 34 1 7.7387 3.2977 1.8190 35 1 7.6981 4.0489 0.2058 36 1 5.9789 6.4690 0.9806 37 1 7.3225 7.5392 1.4459 38 1 7.4553 6.5264 -0.0121 39 1 7.5529 4.7191 3.8647 40 1 7.3803 6.4837 3.7097 41 1 6.0359 5.4136 3.2444 42 1 9.6249 4.7996 2.4723 43 1 9.5851 5.5513 0.8593 44 1 12.7556 6.7323 2.3133 45 1 4.0638 3.1467 -1.0167 46 1 3.3833 3.3617 0.6283 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792198779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:04 Heat of formation + Delta-G solvation = -114.287950 kcal Electronic energy + Delta-G solvation = -22721.216819 eV Core-core repulsion = 19416.708145 eV Total energy + Delta-G solvation = -3304.508675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89700 -38.63315 -37.08342 -36.47415 -33.47781 -31.99796 -29.44322 -28.53854 -27.37521 -26.68194 -26.29265 -24.72046 -22.73642 -22.32201 -20.29753 -20.02687 -17.89356 -17.73320 -17.08655 -16.61072 -16.20887 -15.81573 -15.23919 -14.60577 -14.29435 -14.08257 -13.74362 -13.61382 -13.35019 -13.06954 -12.68490 -12.49018 -12.11019 -11.97098 -11.80673 -11.72230 -11.47492 -11.27781 -11.10421 -11.05270 -10.95060 -10.83906 -10.73944 -10.67246 -10.47326 -10.42131 -10.20961 -10.06473 -9.65661 -8.99095 -8.79131 -8.30278 -8.08289 -5.94637 -3.94449 1.94639 2.42337 3.33670 3.41549 3.45264 4.14242 4.30465 4.36997 4.51063 4.75470 4.77258 4.84995 4.88227 5.18283 5.19903 5.25239 5.29165 5.37305 5.41313 5.55852 5.66853 5.73704 5.79869 5.91361 5.99827 6.05253 6.07590 6.12890 6.23446 6.31910 6.40096 6.54924 6.69848 6.82826 6.86284 7.23997 7.27412 7.29657 7.45218 7.48304 7.69857 7.73877 7.88152 8.06045 8.50697 9.11256 9.68340 11.17079 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.047554 B = 0.002719 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.666212 B =10296.897360 C =10510.810073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.468 3.532 4 O -0.504 6.504 5 C -0.085 4.085 6 H 0.112 0.888 7 C -0.107 4.107 8 C -0.116 4.116 9 C 0.082 3.918 10 H 0.052 0.948 11 N -0.679 5.679 12 C 0.070 3.930 13 C -0.058 4.058 14 C -0.130 4.130 15 C -0.116 4.116 16 C 0.033 3.967 17 C -0.505 4.505 18 H 0.059 0.941 19 C 0.053 3.947 20 N -0.898 5.898 21 Si 0.887 3.113 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.286 1.286 25 C -0.111 4.111 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.340 0.660 34 H 0.066 0.934 35 H 0.023 0.977 36 H 0.033 0.967 37 H 0.064 0.936 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.053 0.947 41 H 0.042 0.958 42 H 0.015 0.985 43 H 0.012 0.988 44 H 0.258 0.742 45 H 0.071 0.929 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.112 -13.963 -5.097 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.311 3.689 4 O -0.391 6.391 5 C -0.105 4.105 6 H 0.130 0.870 7 C -0.145 4.145 8 C -0.154 4.154 9 C -0.029 4.029 10 H 0.069 0.931 11 N -0.311 5.311 12 C -0.058 4.058 13 C -0.059 4.059 14 C -0.187 4.187 15 C -0.173 4.173 16 C -0.004 4.004 17 C -0.543 4.543 18 H 0.078 0.922 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.212 1.212 25 C -0.149 4.149 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.199 -13.902 -4.458 24.119 hybrid contribution 0.408 1.025 -0.628 1.270 sum -18.790 -12.877 -5.086 23.340 Atomic orbital electron populations 1.23266 0.76498 1.03638 1.02574 1.86523 1.23320 1.33657 1.84129 1.23792 0.92022 0.81213 0.71907 1.90676 1.67122 1.36364 1.44961 1.21886 0.86549 1.00049 1.02010 0.87013 1.22068 0.98134 0.99793 0.94519 1.22237 0.96886 0.95877 1.00385 1.22371 0.94440 0.91493 0.94563 0.93051 1.60639 1.10159 1.02710 1.57579 1.22158 0.85838 0.99314 0.98519 1.20625 0.99024 0.91406 0.94808 1.21773 0.97516 1.00200 0.99202 1.21598 0.98683 1.01233 0.95808 1.19132 0.87488 0.96978 0.96850 1.21281 0.91482 1.02418 1.39133 0.92243 1.25021 0.96813 0.96897 0.95956 1.69974 0.99691 1.36139 1.47988 0.86611 0.78441 0.84457 0.78942 1.19779 1.21174 1.21224 1.22664 0.96746 0.93478 1.02022 0.91876 0.91948 0.88124 0.91391 0.90584 0.89945 0.91592 0.83966 0.91565 0.95870 0.94760 0.91741 0.94128 0.94216 0.92749 0.93865 0.96688 0.96945 0.93253 0.90997 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.41 10.56 -39.23 -0.41 -3.82 16 3 C 0.47 5.07 7.11 36.01 0.26 5.32 16 4 O -0.50 -6.88 15.46 -18.75 -0.29 -7.17 16 5 C -0.09 -0.79 3.37 -90.11 -0.30 -1.09 16 6 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 7 C -0.11 -0.95 6.36 -25.61 -0.16 -1.11 16 8 C -0.12 -1.24 6.55 -25.51 -0.17 -1.41 16 9 C 0.08 0.95 3.20 -65.94 -0.21 0.74 16 10 H 0.05 0.60 7.83 -51.93 -0.41 0.20 16 11 N -0.68 -9.57 5.53 -104.85 -0.58 -10.15 16 12 C 0.07 1.19 4.51 -3.82 -0.02 1.17 16 13 C -0.06 -1.15 0.60 -154.51 -0.09 -1.25 16 14 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 15 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 16 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 17 C -0.50 -13.82 7.65 -34.44 -0.26 -14.09 16 18 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 19 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 20 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 21 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 25 C -0.11 -1.18 5.30 -24.73 -0.13 -1.31 16 26 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 27 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.62 7.83 -51.93 -0.41 0.22 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.34 4.71 6.46 -39.29 -0.25 4.45 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 36 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 37 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 1.13 6.61 -51.93 -0.34 0.79 16 41 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.09 1.13 7.46 -51.93 -0.39 0.74 16 LS Contribution 361.14 15.07 5.44 5.44 Total: -1.00 -30.94 361.14 -7.99 -38.93 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.22 Total: -0.09 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 0.36 Total: -13.64 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.16 Total: -36.31 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.70 Total: -10.99 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.94 -7.99 -38.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792198779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.362 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds