Wall clock time and date at job start Tue Mar 31 2020 05:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47000 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99605 * 2 1 3 5 5 C 1.52997 * 109.47232 * 300.00122 * 4 2 1 6 6 C 1.52999 * 109.47592 * 300.00195 * 5 4 2 7 7 N 1.46492 * 109.47381 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00063 * 85.00074 * 7 6 5 9 9 O 1.21283 * 119.99825 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00270 * 180.02562 * 8 7 6 11 11 C 1.53003 * 109.47371 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46967 * 179.97438 * 11 10 8 13 13 C 1.53005 * 109.46750 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47016 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99679 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99881 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00002 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99743 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47081 * 60.00434 * 18 16 14 20 20 H 1.48494 * 109.47205 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47656 * 300.00174 * 18 16 14 22 22 C 1.53006 * 109.46885 * 59.99462 * 6 5 4 23 23 C 1.52997 * 109.47445 * 300.00628 * 22 6 5 24 24 H 1.09001 * 109.47002 * 59.99969 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00235 * 1 2 3 27 27 H 0.96696 * 114.00485 * 299.99339 * 3 2 1 28 28 H 1.09001 * 109.46832 * 60.00321 * 4 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 30 30 H 1.09000 * 109.47140 * 179.97438 * 5 4 2 31 31 H 1.09002 * 109.47045 * 59.99942 * 5 4 2 32 32 H 1.09002 * 109.46724 * 300.00504 * 6 5 4 33 33 H 0.97000 * 120.00270 * 265.00060 * 7 6 5 34 34 H 1.09005 * 109.46927 * 299.99485 * 10 8 7 35 35 H 1.08997 * 109.47517 * 59.99748 * 10 8 7 36 36 H 1.09005 * 109.46612 * 299.99602 * 11 10 8 37 37 H 1.08997 * 109.47068 * 59.99397 * 11 10 8 38 38 H 1.08996 * 109.47122 * 299.99379 * 12 11 10 39 39 H 1.09000 * 109.47310 * 60.00243 * 12 11 10 40 40 H 1.08996 * 109.47059 * 299.99734 * 13 12 11 41 41 H 1.09000 * 109.46757 * 60.00220 * 13 12 11 42 42 H 0.97003 * 119.99737 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.46726 * 180.02562 * 22 6 5 44 44 H 1.09002 * 109.46589 * 60.00959 * 22 6 5 45 45 H 1.09002 * 109.47045 * 300.00058 * 23 22 6 46 46 H 1.09000 * 109.47140 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2491 6 6 2.0399 -2.8851 0.0001 7 7 1.5511 -4.2660 0.0005 8 6 2.2274 -5.2205 -0.6689 9 8 3.2405 -4.9359 -1.2719 10 6 1.7243 -6.6409 -0.6691 11 6 2.6683 -7.5163 -1.4959 12 6 2.1577 -8.9586 -1.4954 13 6 3.1014 -9.8339 -2.3227 14 6 2.5989 -11.2547 -2.3219 15 1 1.6965 -11.5079 -1.7853 16 6 3.2907 -12.2310 -3.0069 17 7 4.3893 -11.9224 -3.6607 18 14 2.6682 -13.9921 -3.0052 19 1 1.3062 -14.0363 -3.5955 20 1 3.5833 -14.8414 -3.8092 21 1 2.6197 -14.4988 -1.6102 22 6 1.5299 -2.1637 1.2494 23 6 2.0399 -0.7212 1.2493 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.7211 1.8653 -0.7650 28 1 1.6767 -0.2075 -2.1392 29 1 3.1301 -0.7217 -1.2489 30 1 1.8930 -2.6775 -2.1393 31 1 0.4400 -2.1638 -1.2491 32 1 3.1299 -2.8850 0.0002 33 1 0.7406 -4.4935 0.4824 34 1 1.6873 -7.0134 0.3547 35 1 0.7251 -6.6725 -1.1035 36 1 2.7057 -7.1440 -2.5197 37 1 3.6673 -7.4847 -1.0610 38 1 2.1206 -9.3307 -0.4716 39 1 1.1586 -8.9906 -1.9301 40 1 3.1381 -9.4617 -3.3465 41 1 4.1007 -9.8020 -1.8884 42 1 4.8761 -12.6094 -4.1423 43 1 1.8936 -2.6773 2.1394 44 1 0.4399 -2.1637 1.2493 45 1 3.1300 -0.7212 1.2493 46 1 1.6770 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805189639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:02 Heat of formation + Delta-G solvation = -134.193278 kcal Electronic energy + Delta-G solvation = -22174.908774 eV Core-core repulsion = 18869.536940 eV Total energy + Delta-G solvation = -3305.371834 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.53337 -39.18843 -36.37654 -34.84660 -33.72837 -32.59210 -31.31154 -30.42449 -29.33580 -27.08331 -25.45000 -23.29469 -22.82554 -21.66669 -20.32395 -19.95831 -19.28477 -17.38336 -16.78516 -16.47628 -16.08718 -15.77787 -15.60540 -15.14421 -14.47268 -14.44116 -13.88921 -13.75273 -13.52941 -13.07598 -12.80558 -12.64863 -12.56789 -12.28385 -12.20971 -12.01498 -11.74926 -11.65570 -11.52729 -11.47405 -10.99758 -10.95139 -10.58566 -10.52462 -10.50667 -10.38999 -10.13066 -9.76261 -9.59386 -9.20179 -9.14246 -8.97181 -8.28973 -5.93783 -3.96359 2.74532 3.07391 3.36075 3.40427 3.42646 3.74641 4.21571 4.27273 4.49891 4.56360 4.58583 4.73086 4.87118 4.91195 4.99072 5.04244 5.13312 5.26996 5.33355 5.35639 5.39353 5.41670 5.49866 5.59247 5.62218 5.66763 5.73996 5.79010 5.87295 5.96083 6.06140 6.15981 6.32390 6.39029 6.57057 6.86063 7.04113 7.21837 7.26759 7.46185 7.75356 7.91861 8.07686 8.29531 8.49384 9.11162 9.67068 11.17510 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.054889 B = 0.002204 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.995384 B =12703.890079 C =12861.198937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.128 3.872 3 O -0.562 6.562 4 C -0.141 4.141 5 C -0.129 4.129 6 C 0.143 3.857 7 N -0.736 5.736 8 C 0.512 3.488 9 O -0.534 6.534 10 C -0.139 4.139 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.125 4.125 23 C -0.101 4.101 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.376 0.624 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.398 0.602 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.160 26.085 9.911 29.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.088 3.912 3 O -0.368 6.368 4 C -0.179 4.179 5 C -0.168 4.168 6 C 0.038 3.962 7 N -0.388 5.388 8 C 0.300 3.700 9 O -0.410 6.410 10 C -0.179 4.179 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.163 4.163 23 C -0.139 4.139 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.223 0.777 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.991 25.996 9.916 29.240 hybrid contribution -1.013 -0.927 -0.412 1.434 sum -10.004 25.069 9.504 28.616 Atomic orbital electron populations 1.22592 0.95842 1.03094 1.02365 1.21208 0.92632 0.82065 0.95325 1.86540 1.77359 1.23350 1.49562 1.22181 1.02140 0.95917 0.97690 1.21941 1.01015 0.94772 0.99053 1.20947 1.00248 0.80736 0.94267 1.46166 1.29667 1.08275 1.54720 1.21112 0.83554 0.87698 0.77652 1.90705 1.24757 1.82924 1.42600 1.21800 1.01835 0.90987 1.03290 1.21448 0.98072 0.95102 0.99492 1.21649 0.99933 0.92781 1.00421 1.19094 0.94357 0.93396 0.94884 1.21248 1.09699 0.93666 1.31279 0.92819 1.25046 0.95044 0.98962 0.95561 1.69966 1.16734 1.33562 1.33209 0.86666 0.78616 0.84740 0.77992 1.20301 1.21332 1.20289 1.21847 1.01525 0.95068 0.97899 1.21358 1.01824 0.93919 0.96771 0.92404 0.90886 0.91898 0.77702 0.91457 0.90787 0.90870 0.91410 0.89349 0.76769 0.89187 0.89206 0.91853 0.91830 0.93494 0.93516 0.96607 0.96600 0.92994 0.90543 0.90892 0.90825 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 8.12 37.16 0.30 -0.71 16 2 C 0.13 0.89 1.15 -90.62 -0.10 0.78 16 3 O -0.56 -4.29 12.98 -35.23 -0.46 -4.75 16 4 C -0.14 -1.07 5.07 -26.73 -0.14 -1.20 16 5 C -0.13 -1.12 5.22 -26.73 -0.14 -1.26 16 6 C 0.14 1.29 2.45 -67.93 -0.17 1.12 16 7 N -0.74 -6.99 5.08 -53.81 -0.27 -7.26 16 8 C 0.51 6.97 7.79 -10.99 -0.09 6.89 16 9 O -0.53 -9.62 15.65 5.56 0.09 -9.54 16 10 C -0.14 -1.83 5.70 -27.88 -0.16 -1.99 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 13 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 14 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 15 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.69 13.29 55.43 0.74 -26.95 16 18 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.13 -0.81 5.12 -26.73 -0.14 -0.95 16 23 C -0.10 -0.71 5.10 -26.73 -0.14 -0.85 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.07 0.39 4.81 -51.93 -0.25 0.14 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.38 1.52 9.05 45.56 0.41 1.94 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 32 H 0.09 1.02 7.58 -51.93 -0.39 0.63 16 33 H 0.40 2.59 8.60 -40.82 -0.35 2.24 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 37 H 0.06 1.23 8.10 -51.93 -0.42 0.80 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.38 6.43 -51.93 -0.33 0.04 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -34.65 361.90 -8.60 -43.25 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -7.55 Total: -1.12 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -1.57 Total: -16.07 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.46 Total: -34.21 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.37 Total: -14.28 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.65 -8.60 -43.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805189639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.946 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds