Wall clock time and date at job start Tue Mar 31 2020 06:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46875 * 2 1 4 4 C 1.53003 * 109.46897 * 240.00521 * 2 1 3 5 5 C 1.50697 * 109.47342 * 60.00010 * 4 2 1 6 6 H 1.08003 * 120.00148 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00000 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00225 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00012 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47363 * 89.99568 * 9 7 5 11 11 H 1.48504 * 109.47026 * 209.99568 * 9 7 5 12 12 H 1.48500 * 109.46759 * 329.99359 * 9 7 5 13 13 C 1.52999 * 109.47350 * 120.00259 * 2 1 3 14 14 N 1.46504 * 109.47003 * 300.00030 * 13 2 1 15 15 C 1.34776 * 119.99629 * 179.97438 * 14 13 2 16 16 O 1.21283 * 120.00127 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99699 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47386 * 179.97438 * 17 15 14 19 19 H 1.08999 * 109.52160 * 305.12821 * 18 17 15 20 20 C 1.53178 * 109.52605 * 184.99784 * 18 17 15 21 21 C 1.53178 * 109.03511 * 183.05016 * 20 18 17 22 22 C 1.53093 * 109.16255 * 56.98447 * 21 20 18 23 23 O 1.42904 * 109.42351 * 302.38111 * 22 21 20 24 24 C 1.42930 * 114.08305 * 61.15476 * 23 22 21 25 25 H 1.09000 * 109.47011 * 299.99262 * 1 2 3 26 26 H 1.08996 * 109.47109 * 59.99525 * 1 2 3 27 27 H 1.09002 * 109.47172 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47186 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47639 * 300.00150 * 3 2 1 30 30 H 1.09003 * 109.47184 * 60.00515 * 3 2 1 31 31 H 1.09000 * 109.47035 * 180.02562 * 4 2 1 32 32 H 1.09002 * 109.46771 * 299.99365 * 4 2 1 33 33 H 0.96996 * 120.00074 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.46984 * 179.97438 * 13 2 1 35 35 H 1.09002 * 109.46963 * 59.99897 * 13 2 1 36 36 H 0.96998 * 119.99630 * 0.02562 * 14 13 2 37 37 H 1.09000 * 109.47270 * 59.99644 * 17 15 14 38 38 H 1.09001 * 109.47506 * 300.00041 * 17 15 14 39 39 H 1.09002 * 109.54068 * 63.18427 * 20 18 17 40 40 H 1.08992 * 109.61712 * 302.96567 * 20 18 17 41 41 H 1.09000 * 109.52619 * 297.07706 * 21 20 18 42 42 H 1.08997 * 109.57176 * 176.91900 * 21 20 18 43 43 H 1.09002 * 109.48198 * 62.37219 * 22 21 20 44 44 H 1.08999 * 109.48029 * 182.39833 * 22 21 20 45 45 H 1.09003 * 109.47243 * 178.86599 * 24 23 22 46 46 H 1.08992 * 109.48518 * 58.83967 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9164 0.8672 -2.3806 7 6 1.8703 -0.4820 -3.7320 8 7 2.6264 -1.5513 -3.8528 9 14 1.2482 0.3991 -5.2572 10 1 2.2271 1.4401 -5.6614 11 1 1.0825 -0.5799 -6.3615 12 1 -0.0595 1.0375 -4.9612 13 6 2.0401 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8770 -0.4916 3.6694 16 8 2.5735 -1.4782 3.7806 17 6 1.3742 0.2184 4.8999 18 6 1.8833 -0.5035 6.1492 19 1 1.5970 -1.5543 6.1047 20 6 1.2727 0.1410 7.3974 21 6 1.8480 -0.5396 8.6433 22 6 3.3745 -0.4261 8.6184 23 8 3.8755 -1.0172 7.4176 24 6 3.4084 -0.3913 6.2205 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 3.1300 -0.7216 -1.2491 32 1 1.6767 -1.7489 -1.2493 33 1 2.8607 -1.8826 -4.7338 34 1 3.1300 -0.7217 1.2489 35 1 1.6767 -1.7490 1.2491 36 1 0.9938 0.7577 2.3564 37 1 0.2842 0.2184 4.8996 38 1 1.7374 1.2461 4.9004 39 1 0.1901 0.0153 7.3803 40 1 1.5161 1.2033 7.4171 41 1 1.5610 -1.5912 8.6492 42 1 1.4610 -0.0514 9.5377 43 1 3.6615 0.6249 8.6534 44 1 3.7918 -0.9458 9.4808 45 1 3.8502 -0.8862 5.3556 46 1 3.6959 0.6600 6.2240 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805281410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:56 Heat of formation + Delta-G solvation = -121.386389 kcal Electronic energy + Delta-G solvation = -22819.248142 eV Core-core repulsion = 19514.431656 eV Total energy + Delta-G solvation = -3304.816486 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.18670 -38.99829 -37.14402 -34.53529 -33.61895 -32.29718 -32.04101 -28.27737 -27.04681 -26.53898 -25.80217 -25.17053 -23.26593 -22.37453 -20.38513 -20.06507 -18.28530 -16.80983 -16.50146 -16.40481 -16.16035 -15.50073 -15.36031 -14.73592 -14.59933 -14.40443 -14.10993 -13.72619 -13.18160 -12.95881 -12.83334 -12.74635 -12.67127 -12.27011 -12.07649 -11.85281 -11.44849 -11.21226 -11.14525 -11.03734 -10.99758 -10.86850 -10.65862 -10.47733 -10.42057 -10.27094 -9.89707 -9.70294 -9.58129 -9.16506 -8.93902 -8.72775 -8.37296 -6.01217 -4.02707 2.79080 3.29726 3.36448 3.37623 3.40979 3.78600 4.43695 4.47623 4.54098 4.56604 4.69244 4.86602 4.99283 5.19972 5.22995 5.30956 5.34225 5.35885 5.41116 5.51268 5.55471 5.60704 5.64970 5.72644 5.74987 5.78950 6.08919 6.14116 6.14862 6.20246 6.27896 6.37064 6.55645 6.60405 6.75060 7.04025 7.05132 7.09118 7.11087 7.62493 7.73277 7.74707 7.97397 8.38156 8.42968 9.02135 9.60514 11.10245 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.047397 B = 0.002756 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.617563 B =10156.261313 C =10407.389960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.127 3.873 14 N -0.722 5.722 15 C 0.503 3.497 16 O -0.542 6.542 17 C -0.137 4.137 18 C -0.106 4.106 19 H 0.088 0.912 20 C -0.119 4.119 21 C -0.155 4.155 22 C 0.056 3.944 23 O -0.380 6.380 24 C 0.061 3.939 25 H 0.028 0.972 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.260 0.740 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.398 0.602 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.090 0.910 45 H 0.114 0.886 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.740 6.553 22.380 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.004 3.996 14 N -0.373 5.373 15 C 0.289 3.711 16 O -0.420 6.420 17 C -0.177 4.177 18 C -0.125 4.125 19 H 0.107 0.893 20 C -0.156 4.156 21 C -0.193 4.193 22 C -0.021 4.021 23 O -0.298 6.298 24 C -0.015 4.015 25 H 0.047 0.953 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.233 0.767 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.108 0.892 45 H 0.132 0.868 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.031 5.564 22.306 23.188 hybrid contribution -0.856 1.076 -1.050 1.730 sum -3.887 6.641 21.256 22.606 Atomic orbital electron populations 1.21760 0.95305 1.01146 1.00199 1.20901 0.95439 0.95838 0.95119 1.21759 1.00539 0.95908 1.00197 1.19092 0.96361 0.95230 0.89495 1.21176 1.31213 1.12058 0.90522 0.92277 1.25019 0.95335 0.95061 0.99101 1.69963 1.36946 1.22992 1.23464 0.86648 0.79165 0.79419 0.83070 1.20766 1.21326 1.19960 1.21624 0.98908 0.96027 0.82996 1.46249 1.53153 1.31932 1.06002 1.20623 0.80718 0.84887 0.84837 1.90685 1.38147 1.26412 1.86758 1.21691 1.02671 1.00614 0.92707 1.21536 0.96850 1.01336 0.92786 0.89339 1.21664 1.00386 0.99606 0.93955 1.22179 0.96795 1.02046 0.98298 1.22572 0.93250 0.97948 0.88282 1.87999 1.70077 1.58056 1.13675 1.22888 0.93098 0.97372 0.88150 0.95280 0.91438 0.93386 0.93373 0.91449 0.95275 0.96351 0.96353 0.93014 0.91828 0.91853 0.76708 0.88700 0.89000 0.91350 0.91766 0.90962 0.91000 0.93468 0.89181 0.86791 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 2 C -0.07 -1.35 0.54 -154.51 -0.08 -1.43 16 3 C -0.13 -2.17 8.05 37.16 0.30 -1.87 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.48 7.65 -34.44 -0.26 -13.74 16 6 H 0.06 1.49 5.68 -52.48 -0.30 1.20 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 13 C 0.13 2.20 4.56 -4.04 -0.02 2.19 16 14 N -0.72 -9.88 4.96 -60.29 -0.30 -10.18 16 15 C 0.50 6.92 7.56 -10.99 -0.08 6.84 16 16 O -0.54 -9.60 13.99 5.55 0.08 -9.52 16 17 C -0.14 -1.28 5.18 -27.88 -0.14 -1.43 16 18 C -0.11 -1.08 2.03 -90.48 -0.18 -1.27 16 19 H 0.09 1.09 7.95 -51.93 -0.41 0.68 16 20 C -0.12 -0.91 5.31 -26.55 -0.14 -1.05 16 21 C -0.16 -1.18 6.14 -26.59 -0.16 -1.34 16 22 C 0.06 0.49 6.84 37.21 0.25 0.75 16 23 O -0.38 -4.78 10.77 -35.23 -0.38 -5.16 16 24 C 0.06 0.73 5.84 37.21 0.22 0.95 16 25 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 26 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 30 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.40 4.51 6.16 -40.82 -0.25 4.26 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.11 1.65 6.04 -51.93 -0.31 1.34 16 46 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 354.35 15.07 5.34 5.34 Total: -1.00 -31.07 354.35 -7.92 -38.98 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -8.15 Total: 1.18 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -0.22 Total: -11.07 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.44 Total: -35.81 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.30 Total: -14.68 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.07 -7.92 -38.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805281410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.403 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds