Wall clock time and date at job start Tue Mar 31 2020 05:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99934 * 2 1 4 4 H 1.48502 * 109.47194 * 269.99617 * 3 2 1 5 5 H 1.48496 * 109.47505 * 29.99448 * 3 2 1 6 6 H 1.48498 * 109.47353 * 149.99824 * 3 2 1 7 7 C 1.37880 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99897 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99604 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46909 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47081 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47081 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47116 * 180.02562 * 12 11 10 14 14 O 1.20824 * 120.00104 * 359.97438 * 13 12 11 15 15 O 1.34230 * 119.99717 * 180.02562 * 13 12 11 16 16 C 1.45199 * 116.99614 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47075 * 179.97438 * 16 15 13 18 18 C 1.52992 * 109.47482 * 179.97438 * 17 16 15 19 19 N 1.46901 * 109.47859 * 179.97438 * 18 17 16 20 20 C 1.48533 * 110.99670 * 52.60024 * 19 18 17 21 21 C 1.54936 * 103.22827 * 159.72645 * 20 19 18 22 22 C 1.54602 * 102.91755 * 322.58844 * 21 20 19 23 23 C 1.47895 * 111.00585 * 169.99973 * 19 18 17 24 24 H 0.97008 * 119.99970 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47407 * 59.99546 * 9 7 2 26 26 H 1.09003 * 109.47349 * 299.99313 * 9 7 2 27 27 H 1.09000 * 109.47151 * 59.99764 * 10 9 7 28 28 H 1.09003 * 109.46860 * 299.99987 * 10 9 7 29 29 H 1.09000 * 109.47007 * 60.00060 * 11 10 9 30 30 H 1.09003 * 109.47577 * 299.99932 * 11 10 9 31 31 H 1.09000 * 109.47151 * 60.00148 * 12 11 10 32 32 H 1.09003 * 109.47028 * 299.99604 * 12 11 10 33 33 H 1.09002 * 109.47177 * 299.99820 * 16 15 13 34 34 H 1.09001 * 109.47399 * 59.99991 * 16 15 13 35 35 H 1.09002 * 109.47153 * 300.00058 * 17 16 15 36 36 H 1.08998 * 109.47533 * 59.99688 * 17 16 15 37 37 H 1.09002 * 109.47103 * 300.00247 * 18 17 16 38 38 H 1.09001 * 109.47066 * 60.00169 * 18 17 16 39 39 H 1.09002 * 110.67270 * 278.16471 * 20 19 18 40 40 H 1.08998 * 110.66667 * 41.29259 * 20 19 18 41 41 H 1.09002 * 110.72666 * 204.23420 * 21 20 19 42 42 H 1.08998 * 110.72369 * 80.94172 * 21 20 19 43 43 H 1.09001 * 110.30688 * 263.03605 * 22 21 20 44 44 H 1.08996 * 110.30747 * 140.87557 * 22 21 20 45 45 H 1.08994 * 109.91810 * 333.51090 * 23 19 18 46 46 H 1.08999 * 109.91451 * 94.60787 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 6 2.4746 -6.1500 0.0005 13 6 1.7210 -7.4551 0.0005 14 8 0.5128 -7.4551 0.0015 15 8 2.3922 -8.6176 0.0005 16 6 1.6014 -9.8353 0.0011 17 6 2.5333 -11.0486 0.0004 18 6 1.7001 -12.3318 0.0016 19 7 2.5949 -13.4969 0.0003 20 6 3.5887 -13.4059 1.1004 21 6 4.0568 -14.8722 1.2774 22 6 2.7578 -15.6795 1.0512 23 6 1.8398 -14.7455 0.2412 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 0.8534 -5.0450 -0.8886 30 1 0.8539 -5.0446 0.8914 31 1 3.1018 -6.0922 0.8901 32 1 3.1005 -6.0923 -0.8900 33 1 0.9729 -9.8600 0.8914 34 1 0.9722 -9.8604 -0.8886 35 1 3.1615 -11.0238 -0.8901 36 1 3.1629 -11.0238 0.8898 37 1 1.0723 -12.3564 0.8923 38 1 1.0703 -12.3569 -0.8877 39 1 4.4240 -12.7675 0.8127 40 1 3.1195 -13.0391 2.0133 41 1 4.4420 -15.0354 2.2840 42 1 4.8066 -15.1307 0.5297 43 1 2.2961 -15.9286 2.0066 44 1 2.9697 -16.5862 0.4848 45 1 0.9356 -14.5288 0.8100 46 1 1.5779 -15.2102 -0.7093 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805697909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:51 Heat of formation + Delta-G solvation = -118.327610 kcal Electronic energy + Delta-G solvation = -21144.415356 eV Core-core repulsion = 17839.731509 eV Total energy + Delta-G solvation = -3304.683847 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44850 -39.44158 -36.87798 -34.96774 -34.37896 -32.67443 -30.91682 -29.83506 -29.29791 -26.33646 -25.18813 -22.95010 -22.37344 -21.28047 -20.83493 -20.42398 -20.00878 -17.53717 -16.96415 -16.62041 -16.39942 -16.17211 -15.76708 -15.48185 -14.69249 -14.43483 -14.40408 -13.62608 -13.52433 -13.39875 -12.82805 -12.70450 -12.46396 -12.16740 -11.97735 -11.86484 -11.73486 -11.65215 -11.57411 -11.56083 -11.28639 -11.03088 -11.00339 -10.65274 -10.56520 -10.54341 -10.45618 -10.33631 -9.64356 -9.28144 -9.01645 -8.90605 -8.31201 -5.96039 -3.98624 2.30809 2.59064 3.34128 3.40217 3.43470 3.52810 4.15252 4.21813 4.45711 4.48656 4.53006 4.64956 4.71847 4.81292 4.91075 4.97331 5.04547 5.17836 5.19074 5.22463 5.28926 5.30124 5.33617 5.36990 5.39497 5.50767 5.57585 5.66748 5.70375 5.72142 5.81105 6.06614 6.20663 6.38856 6.42333 6.48800 6.54811 6.77472 6.95604 7.16826 7.72626 7.83666 7.87520 8.04759 8.46557 9.08924 9.65177 11.15223 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.064819 B = 0.001783 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.870883 B =15699.093272 C =15993.431046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.108 4.108 12 C -0.112 4.112 13 C 0.460 3.540 14 O -0.506 6.506 15 O -0.362 6.362 16 C 0.067 3.933 17 C -0.119 4.119 18 C 0.049 3.951 19 N -0.517 5.517 20 C 0.030 3.970 21 C -0.125 4.125 22 C -0.132 4.132 23 C 0.034 3.966 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.045 0.955 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.835 -31.557 1.887 32.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.149 4.149 13 C 0.303 3.697 14 O -0.393 6.393 15 O -0.279 6.279 16 C -0.008 4.008 17 C -0.157 4.157 18 C -0.079 4.079 19 N -0.241 5.241 20 C -0.098 4.098 21 C -0.163 4.163 22 C -0.170 4.170 23 C -0.094 4.094 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.063 0.937 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.543 -31.480 1.378 32.182 hybrid contribution -0.253 0.913 0.772 1.223 sum 6.290 -30.566 2.150 31.281 Atomic orbital electron populations 1.69977 1.06055 1.26523 1.50892 1.25042 0.94847 0.99256 0.95414 0.86598 0.79817 0.83530 0.78058 1.20700 1.21263 1.19909 1.21280 0.93031 0.91154 1.50487 0.92676 1.19103 0.94046 0.91246 0.97371 1.21651 0.99145 0.93552 1.00420 1.21577 0.97098 0.92721 1.03218 1.21611 0.99920 0.87872 1.05504 1.24219 0.87595 0.85915 0.71963 1.90670 1.15749 1.87886 1.45011 1.86505 1.41990 1.14995 1.84418 1.22900 0.93596 0.81620 1.02641 1.21583 0.98538 0.91127 1.04464 1.22178 0.94611 0.89510 1.01579 1.64802 1.14170 1.01666 1.43496 1.23303 0.96184 0.97487 0.92794 1.22495 0.97544 0.94335 1.01939 1.22403 0.95870 0.98722 1.00018 1.22888 0.95712 0.90726 1.00059 0.93045 0.96540 0.96534 0.93203 0.93180 0.91552 0.91572 0.87890 0.87852 0.91430 0.91132 0.89726 0.90654 0.94226 0.90051 0.89595 0.93546 0.90982 0.90614 0.91501 0.90903 0.93652 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C -0.11 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.11 -1.51 5.81 -27.88 -0.16 -1.67 16 13 C 0.46 6.69 7.96 36.01 0.29 6.98 16 14 O -0.51 -8.92 15.73 -18.75 -0.29 -9.21 16 15 O -0.36 -4.54 10.22 -39.26 -0.40 -4.94 16 16 C 0.07 0.69 5.47 37.16 0.20 0.89 16 17 C -0.12 -0.95 5.25 -26.74 -0.14 -1.10 16 18 C 0.05 0.36 5.03 -3.83 -0.02 0.34 16 19 N -0.52 -3.87 5.40 -230.47 -1.24 -5.11 16 20 C 0.03 0.20 5.10 -1.90 -0.01 0.19 16 21 C -0.13 -0.67 7.06 -24.87 -0.18 -0.85 16 22 C -0.13 -0.68 6.93 -25.37 -0.18 -0.86 16 23 C 0.03 0.21 6.69 -2.76 -0.02 0.19 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.07 1.22 8.10 -51.93 -0.42 0.79 16 31 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.59 6.79 -51.93 -0.35 0.23 16 37 H 0.04 0.28 7.81 -51.93 -0.41 -0.13 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.56 7.67 -51.93 -0.40 0.16 16 40 H 0.05 0.30 8.00 -51.93 -0.42 -0.11 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 0.27 7.57 -51.93 -0.39 -0.12 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -32.53 372.20 -10.32 -42.86 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -8.69 Total: -5.70 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -1.02 Total: -13.67 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: -0.51 Total: -31.79 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.70 Total: -14.16 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.53 -10.32 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.472 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds