Wall clock time and date at job start Tue Mar 31 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46901 * 2 1 4 4 C 1.53000 * 109.47528 * 240.00294 * 2 1 3 5 5 C 1.50701 * 109.46983 * 59.99456 * 4 2 1 6 6 H 1.07998 * 120.00145 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00161 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00374 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99796 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47429 * 89.99359 * 9 7 5 11 11 H 1.48498 * 109.47116 * 209.99875 * 9 7 5 12 12 H 1.48503 * 109.46936 * 329.99405 * 9 7 5 13 13 C 1.52997 * 109.47337 * 119.99728 * 2 1 3 14 14 N 1.46499 * 109.47555 * 300.00682 * 13 2 1 15 15 C 1.34777 * 120.00199 * 180.02562 * 14 13 2 16 16 O 1.21283 * 119.99750 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99928 * 180.27479 * 15 14 13 18 18 O 1.42899 * 109.46876 * 179.72354 * 17 15 14 19 19 C 1.42901 * 113.99607 * 179.97438 * 18 17 15 20 20 C 1.53000 * 112.85331 * 50.33149 * 19 18 17 21 21 C 1.53776 * 113.61430 * 279.13263 * 19 18 17 22 22 C 1.53953 * 87.02233 * 220.05095 * 21 19 18 23 23 C 1.53779 * 113.61149 * 181.52804 * 19 18 17 24 24 H 1.08993 * 109.47298 * 299.99321 * 1 2 3 25 25 H 1.09001 * 109.47411 * 60.00254 * 1 2 3 26 26 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47503 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47703 * 300.00482 * 3 2 1 29 29 H 1.09007 * 109.46685 * 60.00055 * 3 2 1 30 30 H 1.08992 * 109.47143 * 179.97438 * 4 2 1 31 31 H 1.08997 * 109.46799 * 299.99705 * 4 2 1 32 32 H 0.96990 * 120.00275 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47382 * 180.02562 * 13 2 1 34 34 H 1.09002 * 109.47216 * 60.00680 * 13 2 1 35 35 H 0.97000 * 119.99484 * 359.97438 * 14 13 2 36 36 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 37 37 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 38 38 H 1.09003 * 109.46687 * 69.66073 * 20 19 18 39 39 H 1.08995 * 109.47345 * 189.66747 * 20 19 18 40 40 H 1.08996 * 109.46734 * 309.66972 * 20 19 18 41 41 H 1.08998 * 113.61553 * 334.57054 * 21 19 18 42 42 H 1.09007 * 113.61374 * 105.47564 * 21 19 18 43 43 H 1.09004 * 113.54057 * 270.81696 * 22 21 19 44 44 H 1.09006 * 113.74721 * 139.94456 * 22 21 19 45 45 H 1.09009 * 113.61579 * 254.53010 * 23 19 18 46 46 H 1.08996 * 113.61959 * 25.43080 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 1.4324 0.1382 -4.8058 9 14 2.9433 -2.0015 -3.9034 10 1 2.0840 -3.2118 -3.9486 11 1 3.7352 -1.9095 -5.1563 12 1 3.8638 -2.0911 -2.7415 13 6 2.0400 -0.7212 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5751 -1.4769 3.7807 17 6 1.3702 0.2159 4.9000 18 8 1.8428 -0.4605 6.0667 19 6 1.4166 0.1326 7.2950 20 6 -0.0918 0.3847 7.3411 21 6 2.2576 1.3492 7.7161 22 6 2.1608 0.8162 9.1572 23 6 1.9605 -0.5800 8.5444 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9565 -0.8899 29 1 1.6765 1.9563 0.8901 30 1 3.1300 -0.7207 -1.2494 31 1 1.6768 -1.7488 -1.2492 32 1 1.6667 -0.1931 -5.6867 33 1 3.1300 -0.7208 1.2495 34 1 1.6768 -1.7489 1.2493 35 1 0.9942 0.7581 2.3564 36 1 1.7326 1.2439 4.9041 37 1 0.2803 0.2149 4.8959 38 1 -0.6178 -0.5683 7.3999 39 1 -0.3329 0.9874 8.2166 40 1 -0.3993 0.9143 6.4395 41 1 3.2707 1.3398 7.3143 42 1 1.7509 2.3028 7.5674 43 1 1.2898 1.1838 9.6998 44 1 3.0860 0.9152 9.7249 45 1 1.2143 -1.1818 9.0635 46 1 2.8922 -1.1178 8.3696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807722024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:19 Heat of formation + Delta-G solvation = -98.748627 kcal Electronic energy + Delta-G solvation = -22686.322681 eV Core-core repulsion = 19382.487842 eV Total energy + Delta-G solvation = -3303.834839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19715 -40.44804 -38.70598 -36.74753 -35.22614 -34.01562 -30.21263 -29.98474 -29.30329 -27.97775 -27.12262 -26.55647 -24.48109 -23.85087 -21.57532 -19.85411 -19.80127 -18.90695 -18.33409 -17.69129 -17.06800 -16.90571 -16.21869 -16.09848 -15.71050 -15.41147 -15.27735 -14.97601 -14.49541 -14.36392 -14.18861 -14.12974 -13.81844 -13.34697 -13.05979 -12.94512 -12.87296 -12.82009 -12.60140 -12.30175 -12.19579 -12.16483 -12.10638 -11.78228 -11.68999 -11.51776 -11.30203 -11.12961 -10.93255 -10.77026 -10.70897 -10.43435 -10.08117 -8.22903 -6.22704 1.35020 1.38137 1.47914 1.58576 1.85777 2.38474 3.01938 3.12607 3.56078 3.64146 3.77278 3.87846 3.90183 3.96253 4.04932 4.15762 4.18542 4.29921 4.42759 4.61553 4.63833 4.70528 4.76496 4.78149 4.86533 4.87984 4.95729 5.02056 5.03082 5.06886 5.10371 5.15143 5.28546 5.29804 5.35664 5.41064 5.45446 5.47663 5.56002 5.70110 5.76561 6.21435 6.37682 6.59187 6.84165 7.24479 7.40091 8.92587 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.041218 B = 0.002820 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.157100 B = 9927.797600 C =10196.018318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.057 4.057 3 C -0.124 4.124 4 C -0.005 4.005 5 C -0.500 4.500 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.932 3.068 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.253 1.253 13 C 0.139 3.861 14 N -0.706 5.706 15 C 0.505 3.495 16 O -0.581 6.581 17 C 0.047 3.953 18 O -0.381 6.381 19 C 0.070 3.930 20 C -0.162 4.162 21 C -0.162 4.162 22 C -0.128 4.128 23 C -0.130 4.130 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.013 0.987 31 H 0.012 0.988 32 H 0.263 0.737 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.415 0.585 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 4.824 28.182 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.043 4.043 5 C -0.538 4.538 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.592 5.592 9 Si 0.758 3.242 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.177 1.177 13 C 0.015 3.985 14 N -0.361 5.361 15 C 0.292 3.708 16 O -0.460 6.460 17 C -0.032 4.032 18 O -0.300 6.300 19 C 0.031 3.969 20 C -0.219 4.219 21 C -0.199 4.199 22 C -0.165 4.165 23 C -0.167 4.167 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.254 0.746 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.101 0.899 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.650 3.955 28.081 28.482 hybrid contribution 0.303 -0.391 -1.160 1.261 sum -2.347 3.563 26.922 27.258 Atomic orbital electron populations 1.21715 0.93692 1.01291 1.01475 1.20552 0.96648 0.96170 0.92403 1.21713 1.00209 0.94767 1.01470 1.19585 0.95926 0.95516 0.93300 1.21359 1.30205 1.12280 0.89975 0.92740 1.25812 0.97435 0.99823 0.95958 1.70029 1.48135 1.42627 0.98420 0.85924 0.79915 0.80528 0.77868 1.19757 1.21445 1.17737 1.21279 0.98196 0.95602 0.83412 1.45836 1.53434 1.32380 1.04420 1.21000 0.79977 0.84338 0.85450 1.90700 1.39567 1.28351 1.87367 1.22254 1.00981 0.96588 0.83389 1.88074 1.74117 1.54524 1.13298 1.23467 0.95157 0.95106 0.83150 1.22134 0.92197 1.03154 1.04399 1.23605 1.00599 0.98339 0.97402 1.22722 1.03490 0.94707 0.95602 1.23128 1.01631 0.97976 0.93976 0.90934 0.93477 0.93757 0.93824 0.93465 0.90949 0.96832 0.96954 0.92857 0.92933 0.92816 0.74617 0.87776 0.87317 0.91747 0.88994 0.90608 0.90734 0.89472 0.87956 0.90328 0.89895 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 2 C -0.06 -2.00 0.54 -52.18 -0.03 -2.02 16 3 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 4 C -0.01 -0.24 3.11 29.85 0.09 -0.15 16 5 C -0.50 -27.00 8.20 25.60 0.21 -26.79 16 6 H 0.05 3.15 5.92 -2.91 -0.02 3.13 16 7 C 0.01 0.34 5.47 84.66 0.46 0.81 16 8 N -0.95 -58.48 13.96 21.45 0.30 -58.18 16 9 Si 0.93 44.65 27.47 68.60 1.88 46.54 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 13 C 0.14 4.47 4.56 86.38 0.39 4.86 16 14 N -0.71 -17.57 4.96 -463.06 -2.30 -19.87 16 15 C 0.51 14.16 7.91 87.66 0.69 14.85 16 16 O -0.58 -22.73 16.50 16.00 0.26 -22.46 16 17 C 0.05 0.90 5.79 71.24 0.41 1.31 16 18 O -0.38 -9.27 9.83 -129.94 -1.28 -10.54 16 19 C 0.07 1.12 1.39 -10.27 -0.01 1.11 16 20 C -0.16 -1.72 8.80 71.98 0.63 -1.08 16 21 C -0.16 -2.10 7.33 31.18 0.23 -1.87 16 22 C -0.13 -1.33 7.74 31.18 0.24 -1.08 16 23 C -0.13 -1.95 7.50 31.12 0.23 -1.72 16 24 H 0.07 1.71 6.86 -2.39 -0.02 1.69 16 25 H 0.05 1.77 6.62 -2.39 -0.02 1.75 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.78 6.62 -2.39 -0.02 1.76 16 29 H 0.07 1.72 6.86 -2.38 -0.02 1.70 16 30 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 31 H 0.01 0.55 7.57 -2.39 -0.02 0.54 16 32 H 0.26 15.29 8.31 -92.72 -0.77 14.51 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.42 7.53 6.16 -92.71 -0.57 6.95 16 36 H 0.10 1.42 8.06 -2.38 -0.02 1.40 16 37 H 0.11 1.44 6.39 -2.39 -0.02 1.42 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 0.62 7.34 -2.39 -0.02 0.60 16 40 H 0.08 0.65 6.27 -2.39 -0.01 0.63 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.09 0.82 8.10 -2.38 -0.02 0.80 16 43 H 0.10 0.67 7.64 -2.38 -0.02 0.66 16 44 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.08 1.06 8.10 -2.38 -0.02 1.04 16 46 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -73.27 357.06 3.92 -69.35 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.33 Total: 13.81 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 4.72 Total: -18.64 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -2.00 Total: -78.05 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -1.01 Total: -33.01 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Total: -73.27 3.92 -69.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807722024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.397 kcal (2) G-P(sol) polarization free energy of solvation -73.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds