Wall clock time and date at job start Tue Mar 31 2020 05:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99856 * 2 1 4 4 H 1.48503 * 109.47019 * 270.00129 * 3 2 1 5 5 H 1.48502 * 109.47300 * 30.00181 * 3 2 1 6 6 H 1.48500 * 109.47021 * 150.00090 * 3 2 1 7 7 C 1.37879 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99872 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47010 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47166 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47398 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47243 * 179.97438 * 12 11 10 14 14 O 1.21286 * 119.99884 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00048 * 179.97438 * 13 12 11 16 16 C 1.47606 * 118.64127 * 359.97438 * 15 13 12 17 17 C 1.53946 * 112.13978 * 137.58546 * 16 15 13 18 18 C 1.50876 * 110.09845 * 319.43527 * 17 16 15 19 19 C 1.52571 * 109.35382 * 91.88566 * 18 17 16 20 20 H 1.09007 * 108.50692 * 36.23459 * 19 18 17 21 21 C 1.52995 * 108.51362 * 153.88134 * 19 18 17 22 22 O 1.42898 * 109.47536 * 184.99964 * 21 19 18 23 23 C 1.47088 * 114.32962 * 274.98458 * 19 18 17 24 24 C 1.44582 * 118.64188 * 179.73319 * 15 13 12 25 25 H 0.97001 * 120.00398 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47030 * 60.00006 * 9 7 2 27 27 H 1.09000 * 109.47104 * 299.99976 * 9 7 2 28 28 H 1.08997 * 109.47312 * 60.00065 * 10 9 7 29 29 H 1.09000 * 109.47074 * 299.99880 * 10 9 7 30 30 H 1.09003 * 109.47688 * 59.99643 * 11 10 9 31 31 H 1.09006 * 109.47602 * 300.00013 * 11 10 9 32 32 H 1.08998 * 109.46751 * 59.99598 * 12 11 10 33 33 H 1.09000 * 109.46960 * 299.99854 * 12 11 10 34 34 H 1.09000 * 108.94649 * 258.27536 * 16 15 13 35 35 H 1.09001 * 108.94514 * 16.98761 * 16 15 13 36 36 H 1.09001 * 109.36742 * 79.63423 * 17 16 15 37 37 H 1.09003 * 109.36297 * 199.24104 * 17 16 15 38 38 H 1.08996 * 109.49085 * 211.85065 * 18 17 16 39 39 H 1.08998 * 109.48829 * 331.90392 * 18 17 16 40 40 H 1.09000 * 109.47190 * 305.00431 * 21 19 18 41 41 H 1.09009 * 109.46835 * 64.99977 * 21 19 18 42 42 H 0.96697 * 114.00280 * 180.02562 * 22 21 19 43 43 H 1.09000 * 109.33262 * 183.06328 * 23 19 18 44 44 H 1.08995 * 109.33084 * 302.71641 * 23 19 18 45 45 H 1.08996 * 109.44664 * 31.04346 * 24 15 13 46 46 H 1.08999 * 109.44449 * 150.96082 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0018 13 6 1.7212 -7.4551 -0.0018 14 8 0.5083 -7.4551 -0.0009 15 7 2.3951 -8.6223 -0.0029 16 6 3.8707 -8.5873 -0.0046 17 6 4.4768 -9.6263 0.9563 18 6 3.6777 -9.6781 2.2350 19 6 2.5955 -10.7466 2.1120 20 1 2.9966 -11.5805 1.5359 21 6 2.2479 -11.2496 3.5144 22 8 1.3206 -12.3324 3.4159 23 6 1.3583 -10.2842 1.4648 24 6 1.6427 -9.8570 0.0031 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.8539 -5.0446 -0.8914 31 1 0.8534 -5.0452 0.8886 32 1 3.1014 -6.0927 0.8881 33 1 3.1012 -6.0918 -0.8918 34 1 4.2283 -8.7882 -1.0145 35 1 4.2015 -7.5933 0.2965 36 1 4.4644 -10.6077 0.4821 37 1 5.5064 -9.3502 1.1843 38 1 4.3380 -9.9233 3.0668 39 1 3.2131 -8.7083 2.4130 40 1 3.1548 -11.5920 4.0128 41 1 1.8005 -10.4394 4.0904 42 1 1.0549 -12.7016 4.2692 43 1 0.6257 -11.0914 1.4684 44 1 0.9593 -9.4326 2.0158 45 1 0.6994 -9.7096 -0.5227 46 1 2.2188 -10.6354 -0.4972 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819232655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:55 Heat of formation + Delta-G solvation = -120.036280 kcal Electronic energy + Delta-G solvation = -22683.783875 eV Core-core repulsion = 19379.025934 eV Total energy + Delta-G solvation = -3304.757941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.54879 -38.49346 -36.67079 -34.91764 -34.14808 -32.95399 -32.43080 -29.93444 -28.17747 -26.20773 -25.66138 -23.84234 -22.42215 -21.47965 -20.51312 -19.96318 -18.63797 -17.66575 -16.99041 -16.48506 -16.14258 -16.01062 -15.14117 -15.07673 -14.58459 -14.44563 -14.22708 -13.79850 -13.73551 -13.22279 -12.95053 -12.65833 -12.55392 -12.21695 -11.94990 -11.74966 -11.57442 -11.43535 -11.28152 -11.02095 -10.96184 -10.90348 -10.70030 -10.50295 -10.47623 -10.35816 -10.29616 -9.66463 -9.58119 -9.18545 -8.95342 -8.68499 -8.28620 -5.93343 -3.95834 2.75938 2.98731 3.35082 3.41010 3.44156 3.82021 4.30638 4.42052 4.50297 4.62656 4.64159 4.69685 4.83851 4.95978 5.12500 5.14134 5.28227 5.33165 5.35053 5.36741 5.41764 5.45119 5.50527 5.56059 5.63158 5.67318 5.85950 5.92292 5.98095 5.99800 6.17224 6.17901 6.33936 6.55126 6.64577 6.87615 7.05227 7.22463 7.26412 7.34223 7.76441 7.92902 8.08414 8.30840 8.50117 9.11998 9.67660 11.18025 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.029502 B = 0.002683 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.844835 B =10435.068498 C =10562.938306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.508 3.492 14 O -0.533 6.533 15 N -0.614 5.614 16 C 0.105 3.895 17 C -0.130 4.130 18 C -0.113 4.113 19 C -0.082 4.082 20 H 0.072 0.928 21 C 0.076 3.924 22 O -0.573 6.573 23 C -0.127 4.127 24 C 0.117 3.883 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.378 0.622 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.879 -25.973 4.756 28.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.297 3.703 14 O -0.409 6.409 15 N -0.348 5.348 16 C -0.018 4.018 17 C -0.168 4.168 18 C -0.150 4.150 19 C -0.100 4.100 20 H 0.090 0.910 21 C -0.002 4.002 22 O -0.379 6.379 23 C -0.165 4.165 24 C -0.006 4.006 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.225 0.775 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.153 -25.746 4.107 27.631 hybrid contribution 0.527 0.775 0.688 1.163 sum 9.680 -24.971 4.794 27.207 Atomic orbital electron populations 1.69976 1.06049 1.26488 1.50976 1.25045 0.94837 0.99220 0.95497 0.86614 0.79814 0.83626 0.78043 1.20709 1.21265 1.19936 1.21286 0.92966 0.91215 1.50334 0.92774 1.19094 0.94069 0.91272 0.97303 1.21642 0.99050 0.94047 0.99980 1.21459 0.97041 0.92742 1.02903 1.21840 1.00083 0.92348 1.03593 1.21142 0.88282 0.85714 0.75158 1.90698 1.14161 1.87373 1.48638 1.47827 1.06310 1.06155 1.74510 1.22019 0.79221 1.00942 0.99595 1.21737 0.99575 0.99776 0.95736 1.21079 0.96776 0.99523 0.97642 1.20128 0.96419 0.98142 0.95314 0.90986 1.22412 0.91557 0.88750 0.97494 1.86470 1.64919 1.51503 1.34985 1.21192 0.97333 1.01763 0.96244 1.21373 0.97068 0.85608 0.96551 0.93053 0.96595 0.96616 0.93552 0.93524 0.91843 0.91891 0.89309 0.89283 0.91704 0.89430 0.91410 0.90282 0.91591 0.91133 0.93847 0.93645 0.77539 0.90104 0.91689 0.89874 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.14 -1.91 4.02 -27.88 -0.11 -2.03 16 13 C 0.51 7.42 7.61 -10.99 -0.08 7.33 16 14 O -0.53 -10.01 15.42 5.55 0.09 -9.92 16 15 N -0.61 -6.75 2.24 -172.50 -0.39 -7.14 16 16 C 0.10 0.81 5.95 -2.94 -0.02 0.79 16 17 C -0.13 -0.80 5.71 -27.30 -0.16 -0.96 16 18 C -0.11 -0.82 4.93 -28.02 -0.14 -0.96 16 19 C -0.08 -0.67 1.92 -93.68 -0.18 -0.85 16 20 H 0.07 0.59 7.36 -51.92 -0.38 0.20 16 21 C 0.08 0.57 6.26 37.16 0.23 0.80 16 22 O -0.57 -4.70 12.75 -35.23 -0.45 -5.15 16 23 C -0.13 -1.30 4.86 -28.56 -0.14 -1.44 16 24 C 0.12 1.24 5.38 -4.05 -0.02 1.21 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.09 1.06 7.42 -51.93 -0.39 0.67 16 33 H 0.09 1.07 8.02 -51.93 -0.42 0.65 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.64 5.81 -51.93 -0.30 0.34 16 36 H 0.07 0.39 7.32 -51.93 -0.38 0.01 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.07 0.40 7.73 -51.93 -0.40 0.00 16 39 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 40 H 0.04 0.27 7.95 -51.93 -0.41 -0.15 16 41 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 42 H 0.38 1.47 9.12 45.56 0.42 1.89 16 43 H 0.08 0.87 7.36 -51.93 -0.38 0.48 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.08 1.03 7.31 -51.93 -0.38 0.66 16 46 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 LS Contribution 358.73 15.07 5.41 5.41 Total: -1.00 -34.92 358.73 -8.65 -43.57 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -7.60 Total: -2.71 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.42 Total: -14.03 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.35 Total: -34.17 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.36 Total: -15.07 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.92 -8.65 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819232655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.471 kcal (2) G-P(sol) polarization free energy of solvation -34.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds