Wall clock time and date at job start Tue Mar 31 2020 05:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99856 * 2 1 4 4 H 1.48503 * 109.47019 * 270.00129 * 3 2 1 5 5 H 1.48502 * 109.47300 * 30.00181 * 3 2 1 6 6 H 1.48500 * 109.47021 * 150.00090 * 3 2 1 7 7 C 1.37879 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99872 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47010 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47166 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47398 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47243 * 179.97438 * 12 11 10 14 14 O 1.21286 * 119.99884 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00048 * 179.97438 * 13 12 11 16 16 C 1.47606 * 118.64127 * 359.97438 * 15 13 12 17 17 C 1.53946 * 112.13978 * 137.58546 * 16 15 13 18 18 C 1.50876 * 110.09845 * 319.43527 * 17 16 15 19 19 C 1.52571 * 109.35382 * 91.88566 * 18 17 16 20 20 H 1.09007 * 108.50692 * 36.23459 * 19 18 17 21 21 C 1.52995 * 108.51362 * 153.88134 * 19 18 17 22 22 O 1.42898 * 109.47536 * 184.99964 * 21 19 18 23 23 C 1.47088 * 114.32962 * 274.98458 * 19 18 17 24 24 C 1.44582 * 118.64188 * 179.73319 * 15 13 12 25 25 H 0.97001 * 120.00398 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47030 * 60.00006 * 9 7 2 27 27 H 1.09000 * 109.47104 * 299.99976 * 9 7 2 28 28 H 1.08997 * 109.47312 * 60.00065 * 10 9 7 29 29 H 1.09000 * 109.47074 * 299.99880 * 10 9 7 30 30 H 1.09003 * 109.47688 * 59.99643 * 11 10 9 31 31 H 1.09006 * 109.47602 * 300.00013 * 11 10 9 32 32 H 1.08998 * 109.46751 * 59.99598 * 12 11 10 33 33 H 1.09000 * 109.46960 * 299.99854 * 12 11 10 34 34 H 1.09000 * 108.94649 * 258.27536 * 16 15 13 35 35 H 1.09001 * 108.94514 * 16.98761 * 16 15 13 36 36 H 1.09001 * 109.36742 * 79.63423 * 17 16 15 37 37 H 1.09003 * 109.36297 * 199.24104 * 17 16 15 38 38 H 1.08996 * 109.49085 * 211.85065 * 18 17 16 39 39 H 1.08998 * 109.48829 * 331.90392 * 18 17 16 40 40 H 1.09000 * 109.47190 * 305.00431 * 21 19 18 41 41 H 1.09009 * 109.46835 * 64.99977 * 21 19 18 42 42 H 0.96697 * 114.00280 * 180.02562 * 22 21 19 43 43 H 1.09000 * 109.33262 * 183.06328 * 23 19 18 44 44 H 1.08995 * 109.33084 * 302.71641 * 23 19 18 45 45 H 1.08996 * 109.44664 * 31.04346 * 24 15 13 46 46 H 1.08999 * 109.44449 * 150.96082 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4747 -6.1500 -0.0018 13 6 1.7212 -7.4551 -0.0018 14 8 0.5083 -7.4551 -0.0009 15 7 2.3951 -8.6223 -0.0029 16 6 3.8707 -8.5873 -0.0046 17 6 4.4768 -9.6263 0.9563 18 6 3.6777 -9.6781 2.2350 19 6 2.5955 -10.7466 2.1120 20 1 2.9966 -11.5805 1.5359 21 6 2.2479 -11.2496 3.5144 22 8 1.3206 -12.3324 3.4159 23 6 1.3583 -10.2842 1.4648 24 6 1.6427 -9.8570 0.0031 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.8539 -5.0446 -0.8914 31 1 0.8534 -5.0452 0.8886 32 1 3.1014 -6.0927 0.8881 33 1 3.1012 -6.0918 -0.8918 34 1 4.2283 -8.7882 -1.0145 35 1 4.2015 -7.5933 0.2965 36 1 4.4644 -10.6077 0.4821 37 1 5.5064 -9.3502 1.1843 38 1 4.3380 -9.9233 3.0668 39 1 3.2131 -8.7083 2.4130 40 1 3.1548 -11.5920 4.0128 41 1 1.8005 -10.4394 4.0904 42 1 1.0549 -12.7016 4.2692 43 1 0.6257 -11.0914 1.4684 44 1 0.9593 -9.4326 2.0158 45 1 0.6994 -9.7096 -0.5227 46 1 2.2188 -10.6354 -0.4972 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819232655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:54 Heat of formation + Delta-G solvation = -143.438961 kcal Electronic energy + Delta-G solvation = -22684.798691 eV Core-core repulsion = 19379.025934 eV Total energy + Delta-G solvation = -3305.772757 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.48935 -39.34666 -37.41638 -36.64190 -35.00194 -34.61347 -33.48736 -31.55719 -29.20006 -27.34601 -26.83638 -25.01272 -23.70333 -22.52968 -21.73161 -21.12542 -19.59603 -18.43788 -18.25356 -17.98815 -17.32244 -17.06417 -16.50077 -16.12182 -15.83429 -15.45648 -15.07398 -14.94486 -14.54579 -14.49192 -14.03061 -13.89472 -13.65118 -13.52701 -13.34575 -13.22863 -12.82130 -12.66612 -12.35858 -12.25811 -12.16451 -12.13638 -11.93811 -11.66775 -11.53194 -11.38621 -11.34837 -11.29919 -11.11077 -10.88093 -10.66937 -10.55033 -9.59881 -8.18454 -6.30870 1.40490 1.43054 1.54086 1.64487 2.07953 2.42252 3.14223 3.31318 3.55044 3.72652 3.82463 4.00664 4.05164 4.11005 4.14190 4.19193 4.31781 4.40950 4.51788 4.60585 4.62935 4.67451 4.72102 4.77297 4.80164 4.84326 4.86411 4.93732 5.04875 5.11452 5.18030 5.27347 5.28393 5.32971 5.34223 5.36832 5.45536 5.56611 5.76329 5.77889 5.88033 6.25250 6.37044 6.87743 6.87878 7.23392 7.38842 8.93976 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.029502 B = 0.002683 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.844835 B =10435.068498 C =10562.938306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.094 4.094 11 C -0.095 4.095 12 C -0.127 4.127 13 C 0.502 3.498 14 O -0.589 6.589 15 N -0.602 5.602 16 C 0.094 3.906 17 C -0.124 4.124 18 C -0.111 4.111 19 C -0.082 4.082 20 H 0.080 0.920 21 C 0.075 3.925 22 O -0.593 6.593 23 C -0.116 4.116 24 C 0.116 3.884 25 H 0.263 0.737 26 H -0.017 1.017 27 H -0.017 1.017 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.036 0.964 42 H 0.395 0.605 43 H 0.071 0.929 44 H 0.033 0.967 45 H 0.056 0.944 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.766 -26.729 4.895 30.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.182 1.182 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.019 4.019 10 C -0.131 4.131 11 C -0.134 4.134 12 C -0.166 4.166 13 C 0.292 3.708 14 O -0.470 6.470 15 N -0.334 5.334 16 C -0.027 4.027 17 C -0.162 4.162 18 C -0.149 4.149 19 C -0.100 4.100 20 H 0.099 0.901 21 C -0.003 4.003 22 O -0.402 6.402 23 C -0.155 4.155 24 C -0.007 4.007 25 H 0.071 0.929 26 H 0.002 0.998 27 H 0.001 0.999 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.244 0.756 43 H 0.090 0.910 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.095 -26.547 4.257 29.906 hybrid contribution -0.739 0.939 0.660 1.365 sum 12.356 -25.608 4.918 28.855 Atomic orbital electron populations 1.70139 1.08139 1.27764 1.51934 1.26116 0.95781 1.03820 0.94785 0.85368 0.78686 0.77959 0.78545 1.19682 1.20982 1.18190 1.21754 0.93778 0.92146 1.50184 0.91449 1.19056 0.94699 0.93893 0.94213 1.21434 0.97768 0.92563 1.01360 1.21251 0.97500 0.93838 1.00779 1.21720 0.98921 0.89753 1.06236 1.21310 0.87654 0.87018 0.74818 1.90681 1.16529 1.88171 1.51606 1.47874 1.07956 1.05057 1.72506 1.22383 0.76578 1.02318 1.01399 1.21742 1.00277 0.99713 0.94467 1.21080 0.96665 0.97928 0.99195 1.20138 0.95558 0.98696 0.95629 0.90132 1.22437 0.92224 0.88487 0.97129 1.86425 1.65271 1.51692 1.36771 1.21066 0.98400 1.00111 0.95880 1.21416 0.96510 0.86101 0.96709 0.92859 0.99831 0.99850 0.91999 0.91957 0.94086 0.94190 0.86556 0.86468 0.89799 0.88550 0.90480 0.87892 0.89798 0.93215 0.91760 0.94535 0.75593 0.91024 0.94801 0.92573 0.88297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.77 13.29 21.45 0.28 -59.49 16 2 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.54 -31.61 9.11 25.60 0.23 -31.37 16 8 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 9 C 0.02 1.03 4.97 29.85 0.15 1.18 16 10 C -0.09 -3.89 5.15 30.59 0.16 -3.73 16 11 C -0.10 -3.59 4.50 30.60 0.14 -3.45 16 12 C -0.13 -3.31 4.02 29.85 0.12 -3.19 16 13 C 0.50 14.68 7.61 87.66 0.67 15.35 16 14 O -0.59 -23.44 15.42 -3.05 -0.05 -23.49 16 15 N -0.60 -12.49 2.24 -818.05 -1.83 -14.32 16 16 C 0.09 1.13 5.95 86.49 0.51 1.64 16 17 C -0.12 -1.02 5.71 30.22 0.17 -0.85 16 18 C -0.11 -1.32 4.93 29.76 0.15 -1.17 16 19 C -0.08 -1.21 1.92 -12.78 -0.02 -1.23 16 20 H 0.08 1.09 7.36 -2.38 -0.02 1.07 16 21 C 0.07 1.03 6.26 71.98 0.45 1.48 16 22 O -0.59 -9.17 12.75 -148.98 -1.90 -11.07 16 23 C -0.12 -2.41 4.86 29.41 0.14 -2.26 16 24 C 0.12 2.40 5.38 87.39 0.47 2.87 16 25 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 26 H -0.02 -1.03 8.14 -2.39 -0.02 -1.04 16 27 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 31 H 0.04 1.65 8.10 -2.38 -0.02 1.63 16 32 H 0.12 2.42 7.42 -2.39 -0.02 2.40 16 33 H 0.12 2.43 8.02 -2.39 -0.02 2.41 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.10 1.01 5.81 -2.39 -0.01 1.00 16 36 H 0.08 0.55 7.32 -2.39 -0.02 0.53 16 37 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.08 0.72 7.73 -2.39 -0.02 0.70 16 39 H 0.05 0.82 7.48 -2.39 -0.02 0.80 16 40 H 0.06 0.62 7.95 -2.39 -0.02 0.60 16 41 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.39 2.70 9.12 -74.06 -0.68 2.02 16 43 H 0.07 1.59 7.36 -2.39 -0.02 1.58 16 44 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.06 1.48 7.31 -2.39 -0.02 1.46 16 46 H 0.10 1.49 8.07 -2.39 -0.02 1.47 16 Total: -1.00 -79.72 358.73 2.60 -77.12 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: 0.26 Total: 8.95 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 3.80 Total: -24.74 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.55 Total: -73.81 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -1.95 Total: -34.55 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -79.72 2.60 -77.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819232655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.319 kcal (2) G-P(sol) polarization free energy of solvation -79.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds