Wall clock time and date at job start Tue Mar 31 2020 06:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47064 * 2 1 4 4 C 1.53004 * 109.46972 * 240.00515 * 2 1 3 5 5 C 1.50696 * 109.47266 * 59.99978 * 4 2 1 6 6 H 1.07998 * 119.99894 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99795 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00165 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99871 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47050 * 60.00084 * 9 7 5 11 11 H 1.48503 * 109.46914 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47001 * 300.00135 * 9 7 5 13 13 C 1.52996 * 109.47288 * 120.00167 * 2 1 3 14 14 N 1.46903 * 109.47213 * 300.00117 * 13 2 1 15 15 C 1.46896 * 110.99877 * 179.97438 * 14 13 2 16 16 C 1.53002 * 109.46934 * 204.99831 * 15 14 13 17 17 C 1.52997 * 109.47493 * 300.00218 * 16 15 14 18 18 C 1.52996 * 109.46880 * 300.00006 * 17 16 15 19 19 C 1.50706 * 109.47215 * 179.97438 * 18 17 16 20 20 O 1.20825 * 119.99859 * 359.97438 * 19 18 17 21 21 O 1.34224 * 120.00295 * 180.02562 * 19 18 17 22 22 C 1.52998 * 109.47228 * 60.00058 * 18 17 16 23 23 C 1.52996 * 109.47154 * 85.00000 * 15 14 13 24 24 H 1.08999 * 109.47403 * 299.99590 * 1 2 3 25 25 H 1.09007 * 109.47022 * 59.99753 * 1 2 3 26 26 H 1.09003 * 109.47328 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47227 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.47435 * 300.00341 * 3 2 1 29 29 H 1.08999 * 109.46676 * 59.99965 * 3 2 1 30 30 H 1.09002 * 109.46894 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.46758 * 299.99427 * 4 2 1 32 32 H 0.96996 * 119.99897 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47204 * 180.02562 * 13 2 1 34 34 H 1.08999 * 109.46993 * 60.00310 * 13 2 1 35 35 H 1.00897 * 111.00052 * 303.95548 * 14 13 2 36 36 H 1.09004 * 109.47466 * 324.99740 * 15 14 13 37 37 H 1.09003 * 109.47318 * 179.97438 * 16 15 14 38 38 H 1.09008 * 109.46908 * 60.00320 * 16 15 14 39 39 H 1.08997 * 109.47186 * 180.02562 * 17 16 15 40 40 H 1.09003 * 109.47116 * 59.99536 * 17 16 15 41 41 H 1.09000 * 109.47459 * 300.00106 * 18 17 16 42 42 H 0.96700 * 117.00196 * 179.97438 * 21 19 18 43 43 H 1.09000 * 109.47766 * 59.99578 * 22 18 17 44 44 H 1.09005 * 109.47327 * 180.02562 * 22 18 17 45 45 H 1.09000 * 109.47091 * 179.97438 * 23 15 14 46 46 H 1.08997 * 109.47192 * 300.00049 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5376 -0.0107 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8712 -0.4814 -3.7320 8 7 2.6281 -1.5501 -3.8527 9 14 1.2479 0.3989 -5.2572 10 1 1.7418 1.7993 -5.2570 11 1 1.7440 -0.3003 -6.4697 12 1 -0.2370 0.3978 -5.2572 13 6 2.0400 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4487 15 6 2.0209 -0.6953 3.6702 16 6 1.0589 -0.3907 4.8203 17 6 1.0040 1.1205 5.0527 18 6 2.4012 1.6329 5.4073 19 6 2.3474 3.1216 5.6357 20 8 1.2990 3.7121 5.5255 21 8 3.4641 3.7917 5.9604 22 6 3.3633 1.3284 4.2573 23 6 3.4182 -0.1829 4.0249 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7208 -1.2496 31 1 1.6767 -1.7489 -1.2493 32 1 2.8624 -1.8814 -4.7337 33 1 3.1300 -0.7209 1.2494 34 1 1.6767 -1.7489 1.2491 35 1 1.8197 0.9435 2.4402 36 1 2.0600 -1.7720 3.5047 37 1 1.4077 -0.8857 5.7266 38 1 0.0633 -0.7559 4.5676 39 1 0.3190 1.3374 5.8723 40 1 0.6549 1.6151 4.1462 41 1 2.7505 1.1384 6.3137 42 1 3.3800 4.7454 6.0966 43 1 3.0142 1.8229 3.3508 44 1 4.3589 1.6931 4.5102 45 1 3.7672 -0.6771 4.9315 46 1 4.1035 -0.3998 3.2056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819940405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:42 Heat of formation + Delta-G solvation = -127.413528 kcal Electronic energy + Delta-G solvation = -23549.122929 eV Core-core repulsion = 20244.045086 eV Total energy + Delta-G solvation = -3305.077842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.82885 -39.07233 -36.90836 -36.30562 -33.55961 -32.14507 -30.98016 -29.54753 -26.87040 -26.30803 -25.13548 -24.33355 -22.85462 -22.37659 -21.10874 -19.05026 -18.22204 -17.93862 -16.95035 -16.32969 -16.11195 -15.59950 -14.87313 -14.64748 -14.29854 -14.15914 -13.71111 -13.53676 -13.02948 -12.86273 -12.72702 -12.58792 -12.34562 -12.00361 -11.85044 -11.82307 -11.70507 -11.30533 -10.97431 -10.94875 -10.86182 -10.78181 -10.71352 -10.48272 -10.40462 -10.27229 -10.19826 -10.06821 -9.65671 -8.98618 -8.80830 -8.29546 -8.01037 -5.94395 -3.94391 1.99031 2.81322 3.36144 3.40587 3.43151 4.36384 4.44554 4.48404 4.53248 4.67746 4.94611 5.06723 5.17949 5.23796 5.30927 5.32510 5.41379 5.53730 5.64915 5.71064 5.79939 5.87045 5.91519 5.94090 6.02137 6.08079 6.19683 6.23054 6.32234 6.34405 6.37910 6.54031 6.69639 6.82301 6.85844 7.23390 7.27562 7.29782 7.46114 7.67143 7.70821 7.74994 7.88244 8.06045 8.50776 9.10855 9.68339 11.17245 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.025515 B = 0.003594 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.129422 B = 7789.897910 C = 8151.853535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 C -0.129 4.129 4 C 0.035 3.965 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.069 3.931 14 N -0.681 5.681 15 C 0.081 3.919 16 C -0.103 4.103 17 C -0.104 4.104 18 C -0.077 4.077 19 C 0.480 3.520 20 O -0.512 6.512 21 O -0.518 6.518 22 C -0.112 4.112 23 C -0.149 4.149 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.259 0.741 33 H 0.023 0.977 34 H 0.065 0.935 35 H 0.338 0.662 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.408 0.592 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.807 4.995 21.058 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.076 0.924 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.059 4.059 14 N -0.314 5.314 15 C -0.029 4.029 16 C -0.141 4.141 17 C -0.142 4.142 18 C -0.096 4.096 19 C 0.322 3.678 20 O -0.400 6.400 21 O -0.330 6.330 22 C -0.150 4.150 23 C -0.188 4.188 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.030 0.970 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.160 0.840 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.266 0.734 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.020 4.298 20.818 21.282 hybrid contribution 0.729 1.348 -0.855 1.755 sum 1.749 5.646 19.963 20.820 Atomic orbital electron populations 1.21595 0.95011 1.00553 1.00148 1.20628 0.95861 0.94881 0.94537 1.21771 0.99610 0.96895 1.00324 1.19111 0.95819 0.95173 0.90178 1.21210 1.30754 1.11916 0.90657 0.92379 1.25008 0.95399 0.95121 0.99012 1.69957 1.37263 1.23240 1.23359 0.86734 0.79228 0.79772 0.82722 1.20385 1.21450 1.20303 1.22136 0.96336 0.98030 0.89430 1.60732 1.63273 1.06492 1.00905 1.21594 0.91430 0.98920 0.90980 1.21528 1.00695 0.94766 0.97142 1.21436 0.93067 0.96525 1.03126 1.21141 0.99873 0.86948 1.01643 1.23692 0.80729 0.91435 0.71923 1.90731 1.31687 1.70328 1.47225 1.84548 1.38956 1.27844 1.81638 1.21528 0.98885 0.97576 0.96988 1.22213 0.99378 0.94836 1.02365 0.93868 0.92801 0.94176 0.94158 0.91731 0.95035 0.96985 0.96703 0.93137 0.95916 0.91606 0.83987 0.90268 0.92059 0.90519 0.91411 0.89981 0.87560 0.73372 0.91181 0.90528 0.91285 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 2 C -0.06 -1.16 0.60 -154.51 -0.09 -1.26 16 3 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 4 C 0.03 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.91 7.65 -34.44 -0.26 -14.17 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.26 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.07 1.16 4.45 -3.82 -0.02 1.14 16 14 N -0.68 -9.34 4.98 -106.73 -0.53 -9.88 16 15 C 0.08 0.89 2.85 -67.72 -0.19 0.70 16 16 C -0.10 -0.98 5.64 -26.73 -0.15 -1.13 16 17 C -0.10 -1.05 4.25 -26.73 -0.11 -1.16 16 18 C -0.08 -0.69 2.63 -91.77 -0.24 -0.93 16 19 C 0.48 4.96 7.63 36.01 0.27 5.24 16 20 O -0.51 -6.95 16.74 -18.75 -0.31 -7.27 16 21 O -0.52 -4.12 13.32 -39.24 -0.52 -4.64 16 22 C -0.11 -1.05 4.88 -26.73 -0.13 -1.18 16 23 C -0.15 -1.42 5.52 -26.73 -0.15 -1.57 16 24 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 25 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 29 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.02 0.38 7.44 -51.93 -0.39 0.00 16 34 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 35 H 0.34 4.65 3.61 -39.29 -0.14 4.50 16 36 H 0.08 0.90 7.80 -51.93 -0.40 0.50 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 39 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.08 1.01 7.17 -51.93 -0.37 0.63 16 41 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.41 1.65 9.10 45.56 0.41 2.06 16 43 H 0.07 0.76 6.26 -51.93 -0.32 0.44 16 44 H 0.08 0.67 8.11 -51.93 -0.42 0.24 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.76 7.45 -51.93 -0.39 0.37 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -31.44 350.36 -8.17 -39.61 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.10 Total: 2.56 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -0.69 Total: -16.18 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.21 Total: -36.04 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.84 Total: -11.91 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.44 -8.17 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819940405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.804 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds