Wall clock time and date at job start Tue Mar 31 2020 06:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47291 * 2 1 4 4 C 1.53002 * 109.46950 * 240.00462 * 2 1 3 5 5 C 1.50694 * 109.47478 * 59.99700 * 4 2 1 6 6 H 1.08002 * 119.99862 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00345 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99859 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00294 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46988 * 60.00130 * 9 7 5 11 11 H 1.48500 * 109.47274 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47184 * 300.00313 * 9 7 5 13 13 C 1.53001 * 109.47514 * 120.00059 * 2 1 3 14 14 N 1.46901 * 109.47051 * 320.94813 * 13 2 1 15 15 C 1.46932 * 110.98165 * 306.71761 * 14 13 2 16 16 C 1.53038 * 109.47791 * 174.18089 * 15 14 13 17 17 C 1.53127 * 109.30820 * 59.16177 * 16 15 14 18 18 C 1.53122 * 109.15822 * 302.32574 * 17 16 15 19 19 H 1.08996 * 109.50249 * 297.71080 * 18 17 16 20 20 C 1.53005 * 109.50046 * 177.63614 * 18 17 16 21 21 C 1.50703 * 109.47112 * 64.99693 * 20 18 17 22 22 O 1.20829 * 120.00104 * 0.02562 * 21 20 18 23 23 O 1.34225 * 120.00100 * 179.97438 * 21 20 18 24 24 C 1.46842 * 110.99716 * 182.49420 * 14 13 2 25 25 H 1.09003 * 109.46670 * 299.99506 * 1 2 3 26 26 H 1.08997 * 109.47345 * 59.99788 * 1 2 3 27 27 H 1.08996 * 109.47084 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47386 * 205.68447 * 3 2 1 29 29 H 1.08999 * 109.47151 * 325.68492 * 3 2 1 30 30 H 1.09002 * 109.47275 * 85.68295 * 3 2 1 31 31 H 1.08996 * 109.47131 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.47142 * 299.99533 * 4 2 1 33 33 H 0.97000 * 120.00103 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47386 * 200.94045 * 13 2 1 35 35 H 1.09009 * 109.46964 * 80.94224 * 13 2 1 36 36 H 1.08997 * 109.51624 * 54.16585 * 15 14 13 37 37 H 1.08998 * 109.45283 * 294.16886 * 15 14 13 38 38 H 1.09000 * 109.50690 * 299.20136 * 16 15 14 39 39 H 1.08998 * 109.50173 * 179.12156 * 16 15 14 40 40 H 1.08997 * 109.52295 * 62.23352 * 17 16 15 41 41 H 1.08994 * 109.51928 * 182.42353 * 17 16 15 42 42 H 1.08998 * 109.47143 * 184.99593 * 20 18 17 43 43 H 1.08999 * 109.46972 * 305.00140 * 20 18 17 44 44 H 0.96695 * 117.00422 * 180.02562 * 23 21 20 45 45 H 1.08999 * 109.46764 * 65.82022 * 24 14 13 46 46 H 1.08998 * 109.45750 * 305.84228 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8702 -0.4821 -3.7320 8 7 2.6255 -1.5519 -3.8528 9 14 1.2469 0.3981 -5.2572 10 1 1.7419 1.7982 -5.2577 11 1 1.7420 -0.3018 -6.4697 12 1 -0.2381 0.3981 -5.2566 13 6 2.0401 -0.7212 1.2492 14 7 1.1894 -0.3757 2.3958 15 6 1.0799 1.0815 2.5495 16 6 0.0751 1.4036 3.6580 17 6 0.5457 0.7668 4.9686 18 6 0.6979 -0.7435 4.7672 19 1 -0.2704 -1.1766 4.5167 20 6 1.2244 -1.3800 6.0551 21 6 0.1981 -1.2253 7.1479 22 8 -0.8473 -0.6639 6.9198 23 8 0.4450 -1.7119 8.3742 24 6 1.6848 -1.0042 3.6270 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.0344 1.4763 -0.4454 29 1 1.3609 2.0680 -0.5793 30 1 2.0883 1.8108 1.0248 31 1 3.1300 -0.7208 -1.2496 32 1 1.6767 -1.7489 -1.2494 33 1 2.8593 -1.8837 -4.7338 34 1 3.0661 -0.4145 1.4524 35 1 2.0087 -1.7985 1.0851 36 1 0.7400 1.5219 1.6122 37 1 2.0545 1.4931 2.8118 38 1 -0.9030 1.0042 3.3900 39 1 0.0052 2.4842 3.7830 40 1 1.5058 1.1944 5.2573 41 1 -0.1891 0.9577 5.7507 42 1 1.4167 -2.4393 5.8847 43 1 2.1493 -0.8861 6.3528 44 1 -0.2434 -1.5890 9.0421 45 1 2.6566 -0.5829 3.8843 46 1 1.7844 -2.0785 3.4715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819940445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:16 Heat of formation + Delta-G solvation = -96.427972 kcal Electronic energy + Delta-G solvation = -23489.870376 eV Core-core repulsion = 20186.136169 eV Total energy + Delta-G solvation = -3303.734208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.70575 -39.44768 -36.91328 -36.11772 -33.46777 -32.14021 -31.84352 -28.27366 -26.71321 -26.62001 -26.23238 -23.41669 -22.86719 -22.13602 -20.76882 -19.66433 -18.31958 -17.86329 -16.77944 -16.21007 -16.12946 -15.74006 -14.88267 -14.40707 -14.37246 -14.29656 -13.83103 -13.31764 -13.15535 -13.07758 -12.91234 -12.47516 -12.22723 -11.99646 -11.79418 -11.66390 -11.57395 -11.18786 -10.96772 -10.92838 -10.77553 -10.72330 -10.58495 -10.43410 -10.36564 -10.19273 -10.08814 -9.74242 -9.63991 -8.87942 -8.76292 -8.28540 -7.94391 -5.93394 -3.93320 1.96116 2.76749 3.36541 3.41038 3.43425 4.14271 4.50971 4.56844 4.63664 4.84837 5.09636 5.16021 5.21254 5.31140 5.42216 5.46839 5.47619 5.66414 5.67557 5.73476 5.83993 5.86115 5.99755 6.02340 6.06307 6.13975 6.23482 6.31685 6.37635 6.40639 6.44287 6.49477 6.66852 6.80995 6.93348 7.21824 7.28196 7.31859 7.47039 7.52040 7.63758 7.72835 7.89968 8.06749 8.51823 9.12001 9.69395 11.18285 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.041282 B = 0.003202 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.099040 B = 8743.489281 C = 9007.707552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.059 4.059 3 C -0.149 4.149 4 C 0.037 3.963 5 C -0.506 4.506 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.067 3.933 14 N -0.529 5.529 15 C 0.034 3.966 16 C -0.117 4.117 17 C -0.121 4.121 18 C -0.073 4.073 19 H 0.089 0.911 20 C -0.110 4.110 21 C 0.478 3.522 22 O -0.508 6.508 23 O -0.522 6.522 24 C 0.061 3.939 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.012 0.988 32 H 0.015 0.985 33 H 0.259 0.741 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.027 0.973 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.408 0.592 45 H 0.030 0.970 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.087 1.830 22.149 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.060 4.060 3 C -0.205 4.205 4 C -0.001 4.001 5 C -0.544 4.544 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.060 4.060 14 N -0.253 5.253 15 C -0.093 4.093 16 C -0.155 4.155 17 C -0.159 4.159 18 C -0.092 4.092 19 H 0.108 0.892 20 C -0.148 4.148 21 C 0.320 3.680 22 O -0.396 6.396 23 O -0.334 6.334 24 C -0.068 4.068 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.045 0.955 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.267 0.733 45 H 0.048 0.952 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.449 1.633 21.547 21.747 hybrid contribution 0.192 0.692 -0.335 0.793 sum -2.256 2.325 21.212 21.458 Atomic orbital electron populations 1.21788 0.94817 1.01105 0.99995 1.20645 0.96000 0.94794 0.94544 1.22347 1.01446 0.96853 0.99894 1.19156 0.95762 0.95125 0.90040 1.21194 1.30696 1.11871 0.90638 0.92482 1.25008 0.95434 0.95134 0.99014 1.69956 1.37376 1.23172 1.23348 0.86733 0.79213 0.79753 0.82736 1.20410 1.21466 1.20321 1.22300 0.93102 1.00606 0.90008 1.62001 1.51166 1.09248 1.02851 1.22870 0.97266 0.88801 1.00397 1.21610 1.00025 0.99587 0.94253 1.21769 1.01185 0.94237 0.98693 1.21039 1.00523 0.96397 0.91272 0.89216 1.21448 0.97121 1.04734 0.91493 1.23597 0.87575 0.74247 0.82545 1.90718 1.27193 1.39624 1.82069 1.84549 1.51448 1.75217 1.22180 1.22035 0.95091 0.99748 0.89894 0.93345 0.92986 0.93840 0.93182 0.92912 0.93147 0.96960 0.96663 0.93142 0.95680 0.91014 0.87247 0.95500 0.91073 0.91989 0.92943 0.90640 0.87438 0.87779 0.73331 0.95199 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 7.45 37.16 0.28 -2.04 16 2 C -0.06 -1.18 0.53 -154.51 -0.08 -1.26 16 3 C -0.15 -2.76 7.08 37.16 0.26 -2.50 16 4 C 0.04 0.92 3.81 -27.88 -0.11 0.82 16 5 C -0.51 -13.89 7.80 -34.44 -0.27 -14.16 16 6 H 0.06 1.53 6.03 -52.49 -0.32 1.21 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 C 0.07 1.15 4.52 -3.82 -0.02 1.13 16 14 N -0.53 -7.74 3.85 -234.60 -0.90 -8.64 16 15 C 0.03 0.46 2.97 -3.79 -0.01 0.45 16 16 C -0.12 -1.42 6.09 -26.65 -0.16 -1.58 16 17 C -0.12 -1.34 5.00 -26.60 -0.13 -1.47 16 18 C -0.07 -0.78 2.00 -90.54 -0.18 -0.96 16 19 H 0.09 1.11 7.96 -51.93 -0.41 0.70 16 20 C -0.11 -0.87 5.29 -27.88 -0.15 -1.02 16 21 C 0.48 4.37 8.06 36.01 0.29 4.66 16 22 O -0.51 -6.25 14.73 -18.75 -0.28 -6.53 16 23 O -0.52 -3.59 13.42 -39.25 -0.53 -4.11 16 24 C 0.06 0.72 4.75 -3.84 -0.02 0.70 16 25 H 0.05 0.83 5.13 -51.93 -0.27 0.56 16 26 H 0.05 1.08 6.59 -51.93 -0.34 0.74 16 27 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.99 7.88 -51.93 -0.41 0.59 16 29 H 0.05 1.00 7.36 -51.93 -0.38 0.62 16 30 H 0.05 0.80 4.11 -51.93 -0.21 0.58 16 31 H 0.01 0.33 8.11 -51.93 -0.42 -0.09 16 32 H 0.02 0.41 8.13 -51.93 -0.42 -0.01 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.02 0.43 7.97 -51.93 -0.41 0.01 16 35 H 0.07 1.28 7.96 -51.92 -0.41 0.87 16 36 H 0.11 1.64 3.35 -51.93 -0.17 1.47 16 37 H 0.03 0.37 7.53 -51.93 -0.39 -0.02 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.89 6.02 -51.93 -0.31 0.58 16 42 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.41 1.20 9.10 45.56 0.41 1.62 16 45 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 LS Contribution 343.62 15.07 5.18 5.18 Total: -1.00 -31.78 343.62 -8.20 -39.98 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.99 Total: -0.58 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -0.39 Total: -15.78 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.17 Total: -34.89 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.80 Total: -10.64 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.78 -8.20 -39.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819940445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.448 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds