Wall clock time and date at job start Tue Mar 31 2020 06:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47144 * 2 1 4 4 C 1.53000 * 109.47017 * 239.99816 * 2 1 3 5 5 C 1.50704 * 109.47161 * 60.00204 * 4 2 1 6 6 H 1.08001 * 119.99866 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00200 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99941 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 119.99957 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46977 * 90.00611 * 9 7 5 11 11 H 1.48502 * 109.47383 * 210.00577 * 9 7 5 12 12 H 1.48505 * 109.47536 * 330.00754 * 9 7 5 13 13 C 1.53003 * 109.47291 * 120.00048 * 2 1 3 14 14 N 1.46896 * 109.46983 * 181.37406 * 13 2 1 15 15 C 1.46845 * 111.00418 * 86.11384 * 14 13 2 16 16 C 1.53041 * 109.52412 * 185.83697 * 15 14 13 17 17 C 1.53120 * 109.30892 * 300.79851 * 16 15 14 18 18 C 1.53199 * 109.11545 * 57.64152 * 17 16 15 19 19 H 1.09001 * 109.49958 * 62.31209 * 18 17 16 20 20 C 1.53000 * 109.52513 * 182.39925 * 18 17 16 21 21 C 1.50702 * 109.47204 * 294.84003 * 20 18 17 22 22 O 1.20823 * 119.99478 * 359.97438 * 21 20 18 23 23 O 1.34224 * 120.00206 * 180.02562 * 21 20 18 24 24 C 1.46849 * 110.99741 * 210.32436 * 14 13 2 25 25 H 1.09003 * 109.47341 * 304.68647 * 1 2 3 26 26 H 1.09003 * 109.47552 * 64.68779 * 1 2 3 27 27 H 1.09002 * 109.47424 * 184.68821 * 1 2 3 28 28 H 1.09002 * 109.46804 * 188.15249 * 3 2 1 29 29 H 1.08998 * 109.46834 * 308.15245 * 3 2 1 30 30 H 1.09000 * 109.47119 * 68.15162 * 3 2 1 31 31 H 1.08997 * 109.47246 * 179.97438 * 4 2 1 32 32 H 1.08999 * 109.47051 * 300.00130 * 4 2 1 33 33 H 0.97001 * 119.99710 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.46842 * 61.36877 * 13 2 1 35 35 H 1.09004 * 109.46995 * 301.37256 * 13 2 1 36 36 H 1.08999 * 109.46081 * 65.81969 * 15 14 13 37 37 H 1.08996 * 109.46212 * 305.85807 * 15 14 13 38 38 H 1.08997 * 109.50102 * 60.76278 * 16 15 14 39 39 H 1.09000 * 109.49841 * 180.83870 * 16 15 14 40 40 H 1.09001 * 109.52184 * 177.57984 * 17 16 15 41 41 H 1.08993 * 109.52709 * 297.77117 * 17 16 15 42 42 H 1.09001 * 109.46904 * 54.84143 * 20 18 17 43 43 H 1.08999 * 109.47240 * 174.83931 * 20 18 17 44 44 H 0.96696 * 117.00441 * 180.02562 * 23 21 20 45 45 H 1.09000 * 109.46278 * 294.17629 * 24 14 13 46 46 H 1.09003 * 109.46265 * 54.14451 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 1.4314 0.1375 -4.8058 9 14 2.9441 -2.0010 -3.9034 10 1 2.0854 -3.2118 -3.9483 11 1 3.7357 -1.9088 -5.1564 12 1 3.8648 -2.0900 -2.7416 13 6 2.0400 -0.7213 1.2492 14 7 3.5086 -0.6925 1.2659 15 6 4.0039 0.5435 1.8849 16 6 5.5274 0.6060 1.7545 17 6 6.1450 -0.6140 2.4436 18 6 5.5754 -1.8885 1.8124 19 1 5.8514 -1.9273 0.7587 20 6 6.1411 -3.1133 2.5341 21 6 7.6284 -3.1896 2.3038 22 8 8.1793 -2.3506 1.6311 23 8 8.3410 -4.1900 2.8451 24 6 4.0505 -1.8786 1.9412 25 1 -0.3634 0.5848 0.8450 26 1 -0.3634 0.4394 -0.9290 27 1 -0.3634 -1.0242 0.0840 28 1 3.1202 1.4459 -0.1457 29 1 1.5625 1.9966 -0.8081 30 1 1.8005 1.9126 0.9538 31 1 3.1299 -0.7209 -1.2495 32 1 1.6766 -1.7489 -1.2492 33 1 1.6657 -0.1940 -5.6868 34 1 1.6969 -1.7557 1.2370 35 1 1.6567 -0.2218 2.1391 36 1 3.7287 0.5570 2.9395 37 1 3.5608 1.4038 1.3832 38 1 5.8026 0.6065 0.6998 39 1 5.8960 1.5164 2.2272 40 1 7.2273 -0.5955 2.3158 41 1 5.9024 -0.5940 3.5060 42 1 5.9427 -3.0292 3.6026 43 1 5.6667 -4.0147 2.1462 44 1 9.2919 -4.1967 2.6698 45 1 3.7752 -1.8538 2.9955 46 1 3.6413 -2.7777 1.4802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819940446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:19 Heat of formation + Delta-G solvation = -105.893154 kcal Electronic energy + Delta-G solvation = -23855.308095 eV Core-core repulsion = 20551.163446 eV Total energy + Delta-G solvation = -3304.144649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62393 -39.18567 -36.84064 -36.11201 -33.47477 -32.16646 -31.75507 -28.28608 -27.58538 -26.56947 -25.90843 -22.99455 -22.86540 -22.06619 -20.77942 -19.61378 -18.24366 -17.78164 -16.73346 -16.66532 -16.14132 -15.54551 -14.86004 -14.48106 -14.43068 -13.89103 -13.81505 -13.41950 -13.26183 -12.87714 -12.60274 -12.43794 -12.36448 -12.13469 -12.09786 -11.68986 -11.44486 -11.09990 -11.02529 -10.97281 -10.94345 -10.84551 -10.64145 -10.54387 -10.34886 -10.14051 -9.87093 -9.61835 -9.44813 -9.22467 -8.74836 -8.37774 -7.84439 -5.89201 -3.83619 2.03261 2.82822 3.41246 3.49199 3.57359 4.14118 4.60222 4.60857 4.69194 4.88932 5.13767 5.19296 5.24624 5.34974 5.45520 5.48013 5.50715 5.58407 5.65304 5.72204 5.85220 5.86993 5.93158 6.03885 6.06762 6.13853 6.21384 6.23759 6.31744 6.41716 6.43394 6.46195 6.54610 6.72806 6.81241 7.09463 7.20606 7.28249 7.46896 7.51326 7.53044 7.70533 7.79393 8.00540 8.71817 9.17470 9.75716 11.24264 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.015941 B = 0.005120 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.037017 B = 5466.936279 C = 6475.017464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.045 4.045 3 C -0.128 4.128 4 C 0.006 3.994 5 C -0.506 4.506 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.911 5.911 9 Si 0.873 3.127 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.261 1.261 13 C 0.067 3.933 14 N -0.525 5.525 15 C 0.037 3.963 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.077 4.077 19 H 0.092 0.908 20 C -0.109 4.109 21 C 0.477 3.523 22 O -0.506 6.506 23 O -0.522 6.522 24 C 0.064 3.936 25 H 0.030 0.970 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.026 0.974 31 H 0.033 0.967 32 H 0.001 0.999 33 H 0.259 0.741 34 H 0.062 0.938 35 H 0.028 0.972 36 H 0.022 0.978 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.051 0.949 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.408 0.592 45 H 0.028 0.972 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.278 -5.516 18.999 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.045 4.045 3 C -0.185 4.185 4 C -0.032 4.032 5 C -0.544 4.544 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.551 5.551 9 Si 0.701 3.299 10 H -0.208 1.208 11 H -0.219 1.219 12 H -0.185 1.185 13 C -0.060 4.060 14 N -0.248 5.248 15 C -0.090 4.090 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.096 4.096 19 H 0.110 0.890 20 C -0.147 4.147 21 C 0.319 3.681 22 O -0.394 6.394 23 O -0.335 6.335 24 C -0.064 4.064 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.019 0.981 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.046 0.954 36 H 0.040 0.960 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.267 0.733 45 H 0.046 0.954 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.168 -5.287 18.222 21.072 hybrid contribution 0.905 -0.948 0.463 1.390 sum 10.073 -6.235 18.684 22.124 Atomic orbital electron populations 1.21795 0.95589 1.00268 1.01296 1.20372 0.94051 0.95345 0.94782 1.21927 1.01472 0.96057 0.99014 1.19517 0.97262 0.94286 0.92087 1.21268 1.30970 1.13015 0.89130 0.90836 1.24991 0.95837 0.96732 0.96042 1.69923 1.46590 1.40821 0.97756 0.86869 0.81488 0.83948 0.77581 1.20820 1.21892 1.18525 1.22295 0.85842 1.00256 0.97604 1.61702 1.08494 1.01062 1.53575 1.22631 0.95539 0.94481 0.96347 1.21550 0.94801 0.97036 1.01947 1.21758 1.01206 0.94333 0.98363 1.21085 0.94672 0.92395 1.01416 0.88959 1.21435 0.87263 1.01997 1.03997 1.23583 0.91171 0.77708 0.75604 1.90728 1.72546 1.39395 1.36699 1.84543 1.26939 1.50372 1.71603 1.22069 0.93564 0.94512 0.96249 0.95114 0.90873 0.93988 0.91965 0.92148 0.95515 0.94919 0.98076 0.93113 0.91905 0.95418 0.96030 0.88253 0.90713 0.91996 0.90605 0.93052 0.87862 0.87470 0.73349 0.95425 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.30 37.15 0.31 -2.13 16 2 C -0.04 -0.86 0.60 -154.51 -0.09 -0.95 16 3 C -0.13 -2.38 6.37 37.16 0.24 -2.14 16 4 C 0.01 0.14 2.96 -27.88 -0.08 0.06 16 5 C -0.51 -14.12 8.23 -34.44 -0.28 -14.41 16 6 H 0.07 2.19 5.97 -52.49 -0.31 1.87 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.91 -28.42 13.96 55.43 0.77 -27.65 16 9 Si 0.87 22.40 27.47 -169.99 -4.67 17.73 16 10 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 12 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 13 C 0.07 1.08 4.24 -3.82 -0.02 1.07 16 14 N -0.52 -8.10 3.68 -234.67 -0.86 -8.97 16 15 C 0.04 0.52 4.73 -3.83 -0.02 0.50 16 16 C -0.12 -1.51 6.09 -26.65 -0.16 -1.67 16 17 C -0.12 -1.42 5.00 -26.57 -0.13 -1.56 16 18 C -0.08 -0.93 1.99 -90.50 -0.18 -1.11 16 19 H 0.09 1.38 7.95 -51.93 -0.41 0.97 16 20 C -0.11 -0.99 5.29 -27.88 -0.15 -1.14 16 21 C 0.48 4.97 8.06 36.01 0.29 5.26 16 22 O -0.51 -6.99 14.74 -18.75 -0.28 -7.27 16 23 O -0.52 -4.13 13.42 -39.24 -0.53 -4.66 16 24 C 0.06 0.82 4.65 -3.83 -0.02 0.80 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.07 1.54 6.48 -51.93 -0.34 1.20 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.18 6.15 -51.93 -0.32 0.86 16 29 H 0.06 1.25 6.90 -51.93 -0.36 0.89 16 30 H 0.03 0.42 7.56 -51.93 -0.39 0.03 16 31 H 0.03 0.81 6.70 -51.93 -0.35 0.46 16 32 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 34 H 0.06 0.98 7.62 -51.93 -0.40 0.59 16 35 H 0.03 0.41 7.84 -51.93 -0.41 0.00 16 36 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.10 1.46 3.95 -51.93 -0.21 1.26 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.98 6.04 -51.93 -0.31 0.67 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.41 1.63 9.10 45.56 0.41 2.05 16 45 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.94 7.90 -51.93 -0.41 0.53 16 LS Contribution 345.35 15.07 5.20 5.20 Total: -1.00 -33.04 345.35 -7.92 -40.96 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.16 Total: 0.29 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -0.40 Total: -15.64 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.09 Total: -36.62 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.80 Total: -11.92 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.04 -7.92 -40.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819940446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.934 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds